Working with smallholders to understand their needs and build on their knowledge, CIMMYT brings the right seeds and inputs to local markets, raises awareness of more productive cropping practices, and works to bring local mechanization and irrigation services based on conservation agriculture practices. CIMMYT helps scale up farmers’ own innovations, and embraces remote sensing, mobile phones and other information technology. These interventions are gender-inclusive, to ensure equitable impacts for all.
MEXICO CITY, Mexico (CIMMYT) — Reductions of spike-ethylene, a plant-aging hormone, could increase wheat yields by 10 to 15 percent in warm locations, according to a recent study published in New Phytologist journal.
Ravi Valluru observes wheat trials in the field at CIMMYT El Batán.
Ethylene is usually produced by plants at different developmental stages and can cause a wide range of negative effects on plant growth and development.
When hot weather hits a wheat field an increase in ethylene levels can lessen the amount of grains produced on ears or spikes by limiting the export of carbohydrates to pollen development.
“It was important to understand how different wheat varieties show yield responses to both ethylene gradients and ethylene inhibitors,” explained Ravi Valluru, wheat physiologist at the International Maize and Wheat Improvement Center (CIMMYT), adding that the research was primarily done in northwestern Mexico using both landraces and modern lines under heat-stressed field conditions.
Valluru is part of a collaborative team of scientists from CIMMYT and Britain’s Lancaster University investigating ways to reduce ethylene production in wheat plants as a means to improve yields in hot weather conditions.
The team treated a diverse set of wheat varieties with silver nitrate, an inorganic compound traditionally used for medicinal and other purposes and that has been shown to control ethylene levels in plants.
“We have known for a long time that ethylene has negative effects on crop yields, but efforts have been meager so far to bring this knowledge into breeding programs,” Valluru said. “It’s very exciting that CIMMYT has initiated the important steps toward bringing the ethylene story to wheat breeding through this project.”
The study has revealed that different wheat varieties responded differently to ethylene and ethylene inhibitors. That’s good news, because breeders can then select the appropriate lines for growing in warmer climates to incorporate into breeding programs.
According to Valluru, breeders have selected for high yield over many years that has inadvertently lowered ethylene expression in modern, improved varieties.
“Being a gas, ethylene is a kind of ‘ethereal’ plant growth regulator, but when produced at higher levels, has a major impact on grain setting and root growth,” said Matthew Reynolds, head of the wheat physiology team at CIMMYT and co-author of the study. “Understanding it and determining its genetic bases are significant steps forward, and we can expect that this knowledge will be applied in breeding.”
Wheat researcher with Green Seeker at Wheat Research Institute Sakrand, Sind Province, Pakistan. Photo: Sarfraz Ahmed
ISLAMABAD (CIMMYT) – Pakistani and the International Maize and Wheat Improvement Center (CIMMYT) scientists are working with wheat farmers to test and promote precision agriculture technology that allows the farmers to save money, maintain high yields and reduce the environmentally harmful overuse of nitrogen fertilizer.
Wheat is planted on more than 9 million hectares in Pakistan each year. Of this, 85 percent is grown under irrigation in farming systems that include several crops.
Farmers may apply nearly 190 kilograms of nitrogen fertilizer per hectare of wheat, placing a third of this when they sow and the remainder in one-to-several partial applications during the crop cycle. Often, the plants fail to take up and use all of the fertilizer applied. More precise management of crop nutrients could increase farmers’ profits by saving fertilizer with no loss of yield, as well as reducing the presence of excess nitrogen that turns into greenhouse gases.
Precision nutrient management means applying the right source of plant nutrients at the right rate, at the right time and in the right place. CIMMYT is working across the globe to create new technologies that are locally adapted to help farmers apply the most precise dosage of fertilizer possible at the right time, so it is taken up and used most effectively by the crop.
CIMMYT and the Borlaug Institute for South Asia (BISA) have developed the application “urea calculator” for cell phones. In this process, a Green Seeker handheld crop sensor quickly assesses crop vigor and provides readings that are used by the urea calculator to furnish an optimal recommendation on the amount of nitrogen fertilizer the wheat crop needs.
National partners observe the Green Seeker at work at Rice Research Institute, Kala Shah Kaku, and Punjab, Pakistan. Photo: Abdul Khalique
Tests with the crop sensor/calculator combination on more than 35 farmer fields during 2016 in Pakistan results showed that 35 kilograms of nitrogen per hectare could be saved without any loss in grain yield. This technology is being evaluated and demonstrated in Pakistan as part of the CIMMYT-led Agricultural Innovation Program (AIP), supported by the United States Agency for International Development in collaboration with Pakistan partners.
CIMMYT recently began work in four provinces of Pakistan, providing Green Seekers and training to AIP research, extension and private partners. Fifty-five specialists in all took part in training events held at the Wheat Research Institute Sakrand, Sind Province; the Rice Research Institute KSK, Punjab Province; and the Model Farm Service Center, Nowshera, Khyber Pakhtunkhwa Province.
Training and new partnerships will help national partners to demonstrate and disseminate sustainable farming practices to wheat farmers throughout Pakistan.
Breaking Ground is a regular series featuring staff at CIMMYT
EL BATAN, Mexico (CIMMYT) – Carolina Sansaloni’s passion for genetics began when she was at Universidad de Misiones in Posadas, Misiones, Argentina, an interest that grew as she moved on to receive her master’s and doctoral degrees in molecular biology at Universidad de Brasilia in Brazil.
While completing her doctorate degree, Sansaloni travelled to Canberra, Australia to research the genomic structure of the eucalyptus tree at Diversity Arrays Technology (DArT), learning the ins and outs of sequencing technology.
In 2012, the International Maize and Wheat Improvement Center (CIMMYT) wanted to introduce the DArT genotyping technologies to Mexico to serve the needs of the Mexican maize and wheat research communities, and once Sansaloni finished her doctoral degree, she was an obvious choice to lead this initiative.
Working under the MasAgro Biodiversidad project in partnership with DArT, INIFAP and CIMMYT, Sansaloni helped to build the Genetic Analysis Service for Agriculture (SAGA in Spanish) from the ground up.
The service, managed by the CIMMYT-based Seeds of Discovery (SeeD) initiative, brings cutting edge genotyping capacity and genetic analysis capability to Mexico. The facility provides unique insights into the genetic variation of wheat and maize at a “sequence level.” Use of the vast quantities of data generated help understand genetic control of characteristics evaluated at a plant or crop level for example, height variations among wheat varieties.
SAGA’s services are available for all CIMMYT scientists, universities, national agriculture research programs and private companies. Worldwide, few other platforms produce this kind of data and most are inaccessible to scientists working at publicly funded institutions because their economic or logistics difficulties.
“When it comes to genotyping technology, it doesn’t matter what type of organism you are working with. It could be wheat, eucalyptus or chicken – the machine will work the same way,” explained Sansaloni.
Sansaloni has also been focusing her time on the wheat Global Diversity Analysis, which characterizes and analyzes seeds in genebanks at both CIMMYT and the International Center for Agricultural Research in Dry Areas (ICARDA). Her team has characterized approximately 100,000 wheat accessions including 40 percent of the CIMMYT genebank and almost 100 percent of the ICARDA genebank wheat collection. This is an incredible and unique resource for wheat scientists providing a genetic framework to facilitate selection of the most relevant accessions for breeding.
“Currently only five to eight percent of materials in the genebank are being used in the breeding programs,” Sansaloni said. “The Global Diversity Analysis could have huge impacts on the future of wheat yields. It is like discovering the pieces of a puzzle, and then beginning to understand how these pieces can fit together to build excellent varieties of wheat.”
Sansaloni’s goal is to combine information from CIMMYT and ICARDA, making the information accessible to the entire wheat community and eventually enhancing breeding programs across the globe.
“Working at CIMMYT has been an invaluable experience,” Sansaloni said. “I’ve had the opportunity to work and collaborate with so many different people, and it’s brought me from the laboratory into the wheat fields, which really brings me closer to my work.”
SeeD is a joint initiative of CIMMYT and the Mexican Ministry of Agriculture (SAGARPA) through the MasAgroproject. SeeD receives additional funding from the CGIAR Research Programs on Maize (MAIZE CRP) and Wheat (WHEAT CRP), and from the UK’s Biotechnology and Biological Sciences Research Council (BBSRC).
Breaking Ground is a regular series featuring staff at CIMMYT
Deepmala Sehgal, wheat geneticist and molecular breeder at CIMMYT. Photo: M. Listman/CIMMYT
EL BATAN, Mexico (CIMMYT) — Molecular analysis research by Deepmala Sehgal, a wheat geneticist and molecular breeder who joined the International Maize and Wheat Improvement Center (CIMMYT) as an associate scientist in 2013, has led to the discovery of novel genes for yield, disease resistance and climate resilience in previously little-used wheat genetic resources.
But getting to the point of applying cutting-edge DNA marker technology to support CIMMYT wheat breeding has involved a few dramatic moves for the New Delhi native, who studied botany throughout middle school and university. “I loved science and chose plant science, because I enjoyed the field trips and didn’t like dissecting animals,” Sehgal said, explaining her choice of profession.
It wasn’t until she was studying for her Ph.D. at Delhi University in 2008 that she first used molecular markers, which are DNA segments near genes for traits of interest, like drought tolerance, and which can help breeders to develop improved crop varieties that feature those traits.
“For my thesis, I used molecular markers in a very basic way to analyze the diversity of safflower species that the U.S. Department of Agriculture had in its gene bank but didn’t know how to classify. I found a place for some and, for several, had to establish completely new subspecies,” Sehgal said.
Later, as a post-doctoral fellow at the University of Aberystwyth in Britain, Sehgal used an approach known as fine mapping of quantitative trait loci (QTL), for drought tolerance in pearl millet. “The aim of fine mapping is to get shorter QTL markers that are nearer to the actual gene involved,” she explained, adding that this makes it easier to use the markers for breeding.
As it turned out, Sehgal’s growing proficiency in molecular marker research for crops made her suited to work as a wheat geneticist at CIMMYT.
“By 2013, CIMMYT had generated a huge volume of new data through genotyping-by-sequencing research, but those data needed to be analyzed using an approach called “association mapping,” to identify markers that breeders could use to select for specific traits. My experience handling such data and working with drought stress gave me an in with CIMMYT.”
Based at CIMMYT’s Mexico headquarters, Sehgal currently devotes 70 percent of her time to work for the CIMMYT global wheat program and the remainder for Seeds of Discovery, a CIMMYT-led project supported by Mexico’s Ministry of Agriculture, Livestock, Fisheries and Food (SAGARPA), which aims to unlock new wheat genetic diversity able to address climate change challenges.
Over the last two years, she has served as lead author for two published studies and co-author for four others. One used genotyping-by-sequencing loci and gene-based markers to examine the diversity of more than 1,400 spring bread wheat seed collections from key wheat environments. Another applied genome-wide association analysis on a selection of landrace collections from Turkey.
“In the first, we discovered not only thousands of new DNA marker variations in landraces adapted to drought and heat, but a new allele for the vernalization gene, which influences the timing of wheat flowering, and new alleles for genes controlling grain quality, all in landraces from near wheat’s center of origin in Asia and the Middle East.”
Sehgal acknowledges the as-yet limited impact of molecular markers in wheat breeding. “Individual markers generally have small effects on genetically complex traits like yield or drought tolerance; moreover, many studies fail to account for “epistasis,” the mutual influence genes have on one another, within a genome.”
To address this, she and colleagues have carried out the first study to identify genomic regions with stable expression for grain yield and yield stability, as well as accounting for their individual epistatic interactions, in a large sample of elite wheat lines under multiple environments via genome wide association mapping. A paper on this work has been accepted for publication in Nature Scientific Reports.
Sehgal has found her experience at CIMMYT enriching. “I feel free here to pursue the work I truly enjoy and that can make a difference, helping our center’s wheat breeders to create improved varieties with which farmers can feed a larger, more prosperous global population in the face of climate change and new, deadly crop diseases.”
CIMMYT’s interventions on cropping intensification in Southern Bangladesh look beyond surface water irrigation to ensure long-term environmental sustainability. Photo: T. Krupnik/CIMMYT
DHAKA, Bangladesh (CIMMYT) – For the first time, researchers have mapped rivers and freshwater canals in southern Bangladesh using geospatial tools as part of a new initiative to help farmers in monsoon and rainfed systems transition to sustainable farming methods. Essential to this transition is the use of surface water for irrigation, which is less costly and more environmentally friendly than extracting groundwater.
A new study by the International Maize and Wheat Improvement Center (CIMMYT) indicates that by switching to surface water irrigation, farmers can greatly increase crop production, even in the face of soil and water salinity constraints. It identified over 121,000 hectares (ha) of currently fallow and rainfed cropland that could be placed under irrigation. Dry season wheat and maize production would also increase significantly, thereby greatly benefiting national cereal productivity.
Access to irrigation is needed to ensure crops will grow during southern Bangladesh’s dry season, a challenge for farmers who have traditionally relied on rainfed cultivation. Extracting groundwater for irrigation is energy-intensive, but southern Bangladesh has a dense network of rivers and natural canals that can be used for surface water irrigation.
In order to maximize productivity without expanding to new land, farmers in southern Bangladesh will need to rotate at least two crops per year. By using crop rotation, an SI practice that can boost yields, increase profits, protect the environment, and improve soil function and quality, farmers can grow different crops on the same plot, minimizing crop expansion into forests.
Surface water irrigation can increase cereal productivity and intensify cropping systems, even in the face of soil and water salinity constraints. Photo: T. Krupnik/CIMMYT
As South Asia’s population continues to rise and more people move out of poverty, changing dietary preferences are increasing the demand for wheat and maize, while maintaining the demand for rice. However, the average increase in the yield potential of staple crops since the 1960s has been negligible, while farm area per capita has shrunk more than 60 percent to just a tenth of a hectare per person, according to 2014 World Bank Indicators.
The Government of Bangladesh recently adopted land- and water-use policies to support agricultural development in southern Bangladesh by calling for donors to invest over $7 billion. Of these funds, $500 million will be allocated for surface water irrigation to help farmers transition from monsoon rice-fallow or rainfed systems to intensified double-cropping systems.
Future interventions on cropping intensification in southern Bangladesh must look beyond surface water irrigation to assess where conjunctive use of groundwater might be needed and to ensure long-term environmental sustainability. While research results support the targeted use of surface water irrigation alongside improved water governance measures, more viable crop diversification options must be explored and the environmental impact of large-scale irrigation development needs to be assessed.
Building on this study, the CIMMYT-led Cereal Systems Initiative for South Asia will work with national agricultural research systems, government and private sector partners to develop policy and market interventions that continue to build sustainable intensification strategies for both irrigated and rainfed systems across southern Bangladesh.
Ulrich Schurr (L), of Germany’s Forschungszentrum Jülich research center and chair of the International Plant Phenotyping Network, and Matthew Reynolds, wheat physiologist with the International Maize and Wheat Improvement Center, are promoting global partnerships in phenotyping to improve critical food crops, through events like the recent International Crop Phenotyping Symposium. Photo: CIMMYT/Mike Listman
EL BATÁN, Mexico (CIMMYT) — Global research networks must overcome nationalist and protectionist tendencies to provide technology advances the world urgently needs, said a leading German scientist at a recent gathering in Mexico of 200 agricultural experts from more than 20 countries.
“Agriculture’s critical challenges of providing food security and better nutrition in the face of climate change can only be met through global communities that share knowledge and outputs; looking inward will not lead to results,” said Ulrich Schurr, director of the Institute of Bio- and Geosciences of the Forschungszentrum Jülich research center, speaking at the 4th International Plant Phenotyping Symposium
Adapting medical sensors helps crop breeders see plants as never before
“Phenotyping” is the high-throughput application of new technology — including satellite images, airborne cameras, and multi-spectral sensors mounted on robotic carts — to the age-old art of measuring the traits and performance of breeding lines of maize, wheat and other crops, Schurr said.
“Farmers domesticated major food crops over millennia by selecting and using seed of individual plants that possessed desirable traits, like larger and better quality grain,” he explained. “Science has helped modern crop breeders to ‘fast forward’ the process, but breeders still spend endless hours in the field visually inspecting experimental plants. Phenotyping technologies can expand their powers of observation and the number of lines they process each year.”
Adapting scanning devices and protocols pioneered for human medicine or engineering, phenotyping was initially confined to labs and other controlled settings, according to Schurr.
“The push for the field started about five years ago, with the availability of new high-throughput, non-invasive devices and the demand for field data to elucidate the genetics of complex traits like yield or drought and heat tolerance,” he added.
Less than 10 years ago, Schurr could count on the fingers of one hand the number of institutions working on phenotyping. “Now, IPPN has 25 formal members and works globally with 50 institutions and initiatives.”
Cameras and other sensors mounted on flying devices like this blimp provide crop researchers with important visual and numerical information about crop growth, plant architecture and photosynthetic traits, among other characteristics. Photo: E. Quilligan/CIMMYTMany ways to see plants and how they grow
So-called “deep” phenotyping uses technologies such as magnetic resonance imaging, positron emission and computer tomography to identify, measure and understand “invisible” plant parts, systems and processes, including roots and water capture and apportionment.
In controlled environments such as labs and greenhouses, researchers use automated systems and environmental simulation to select sources of valuable traits and to gain insight on underlying plant physiology that is typically masked by the variation found in fields, according to Schurr.
“Several specialists in our symposium described automated lab setups to view and analyze roots and greenhouse systems to assess crop shoot geometry, biomass accumulation and photosynthesis,” he explained. “These are then linked to crop simulation models and DNA markers for genes of important traits.”
Schurr said that support for breeding and precision agriculture includes the use of cameras or other sensors that take readings from above plant stands and crop rows in the field.
“These may take the form of handheld devices or be mounted on autonomous, robotic carts,” he said, adding that the plants can be observed using normal light and infrared or other types of radiation reflected from the plant and soil.
“The sensors can also be mounted on flying devices including drones, blimps, helicopters or airplanes. This allows rapid coverage of a larger area and many more plants than are possible through visual observation alone by breeders walking through a field.”
In the near future, mini-satellites equipped with high-resolution visible light sensors to capture and share aerial images of breeding plots will be deployed to gather data in the field, according to symposium participants.
Bringing high-flying technologies to earth
As is typical with new technologies and approaches to research, phenotyping for crop breeding and research holds great promise but must overcome several challenges, including converting images to numeric information, managing massive and diverse data, interfacing effectively with genomic analysis and bringing skeptical breeders on board.
“The demands of crop breeding are diverse — identifying novel traits, studies of genetic resources and getting useful diversity into usable lines, choosing the best parents for crosses and selecting outstanding varieties in the field, to name a few,” Schurr explained. “From the breeders’ side, there’s an opportunity to help develop novel methods and statistics needed to harness the potential of phenotyping technology.”
A crucial linkage being pursued is that with genomic analyses. “Studies often identify genome regions tied to important traits like photosynthesis as ‘absolute,’ without taking into account that different genes might come into play depending on, say, the time of day of measurement,” Schurr said. “Phenotyping can shed light on such genetic phenomena, describing the same thing from varied angles.”
Speaking at the symposium, Greg Rebetzke, a research geneticist since 1995 at Australia’s Commonwealth Scientific and Industrial Research Organisation (CSIRO), said that the effective delivery in commercial breeding of “phenomics” — a term used by some to describe the high-throughput application of phenotyping in the field — is more a question of what and when, not how.
“It’s of particular interest in breeding for genetically complex traits like drought tolerance,” Rebetzke said. “Phenomics can allow breeders to screen many more plants in early generations of selection, helping to bring in more potentially useful genetic diversity. This genetic enrichment with key alleles early on can significantly increase the likelihood of identifying superior lines in the later, more expensive stages of selecting, which is typically done across many different environments.”
Moreover, where conventional breeding generally uses “snaphot” observations of plants at different growth stages, phenotyping technology can provide detailed time-series data for selected physiological traits and how they are responding to their surroundings—say, well-watered versus dry conditions—and for a much greater diversity and area of plots and fields.
Phenotyping is already being translated from academic research to commercial sector development and use, according to Christoph Bauer, leader of phenotyping technologies at KWS, a German company that breeds for and markets seed of assorted food crops.
“It takes six-to-eight years of pre-breeding and breeding to get our products to market,” Bauer said in his symposium presentation. “In that process, phenotyping can be critical to sort the ‘stars’ from the ‘superstars’.”
Commercial technology providers for phenotyping are also emerging, according to Schurr, helping to ensure robustness, the use of best practices and alignment with the needs of academic and agricultural industry customers.
“The partnership triad of academia, commercial providers and private seed companies offers a powerful avenue for things like joint analysis of genotypic variation in the pre-competitive domain or testing of cutting-edge technology,” he added.
On the final morning of the symposium, participants broke off into groups to discuss special topics, including the cost effectiveness of high-throughput phenotyping and its use to analyze crop genetic resources, measuring roots, diagnostics of reproductive growth, sensor technology needs, integrating phenotypic data into crop models, and public-private collaboration.
Schurr said organizations like CIMMYT play a crucial role.
“CIMMYT does relevant breeding for millions of maize and wheat farmers — many of them smallholders — who live in areas often of little interest for large-scale companies, providing support to the national research programs and local or regional seed producers that serve such farmers,” Schurr said. “The center also operates phenotyping platforms worldwide for traits like heat tolerance and disease resistance and freely spreads knowledge and technology.”
Mbula and her son Kivanga shell the cobs of KDV2 maize, an early maturing drought tolerant variety. Photo: B. Wawa/CIMMYT
NAIROBI, Kenya (CIMMYT) – Millions of women across Africa continue to drive agriculture and for Francisca Mbula, a mother of five in her late 50s, her successful journey in farming is credited to her 30-year old eldest son Nzioka Kivanga. Mbula’s family lives in Machakos County, a semi-arid area situated in the eastern part of Kenya’s capital Nairobi, and like thousands of other families, they depend on small-scale rainfed farming, which remains a key livelihood even though it is adversely affected by climatic shocks.
Machakos, like several other counties in eastern Kenya, was badly hit with drought that ravaged various parts of the country during the October-December short rains.
Kivanga is not in formal employment but a dedicated farmer. “Sometimes I see his lack of formal employment as a blessing, because without his hard work and zeal for farming I would not have learned about Drought Tego and KDV2 varieties that have changed my farming,” explained Mbula.
Both Drought Tego and KDV2 are modern improved varieties that are drought tolerant and offer better resistance to common maize diseases in this region. He started planting KDV2, an improved open pollinated variety, during March 2014 and a year later planted Drought Tego, an improved hybrid
A rear view of Kivanga’s new home, built from the income generated using improved maize varieties. Photo: B. Wawa/CIMMYT
“The KDV2 maize is very sweet and good for our Muthokoi meal made from maize and beans, because its grains are small so you don’t need a lot of beans. This helps a lot to cut costs,” said Kivanga. The two varieties are produced and marketed by the Dryland Seed Company (DLS) where Kivanga first learned and purchased at the company shop in Machakos in 2014.
KDV2 and Drought Tego’s yield success has brought many economic gains to Kivanga than he would have otherwise never earned planting traditional varieties. “I started building my house in 2013. It was very slow because I did not have cash to keep the construction going,” said Kivanga. “From the seven bags of KDV2 maize harvest I sold the extra five bags for 3,600 shillings (USD $36) each, which helped me to build up the house from the foundation to the walls.” The seven 90 kilogram (kg) bags of maize harvested from a 2 kg packet of KDV2 variety was four times more than what Kivanga and his mother would have harvested from their recycled local varieties.
When Kivanga got his harvest from Tego in September 2015, it surpassed his expectations. From the 2 kg packet of Drought Tego, Kivanga harvested ten 90 kg bags and another five bags from KDV2 in the same season.
Mbula holds a full cob from the Drought Tego variety, expected to provide her and her family a successful harvest. Photo: B. Wawa/CIMMYT
“With this harvest I was able to plaster all the walls and buy iron sheets for the roofing,” Kivanga said while pointing at his nearly finished house, which he plans to finish in 2016 after the August harvest.
DLS has played a major role in supporting farmers’ access to improved seed by creating awareness about available varieties and their suitability based on agro-ecological zone and planting season.
“KDV varieties are early maturing, so we advise farmers to plant these varieties during the short rains and Drought Tego during the long rains since it is medium maturing,” said Jecinta Mwende, a sales representative at DLS. “This is a sure way of farmers getting higher yields.”
DLS is a key partner collaborating with the International Maize and Wheat Improvement Center (CIMMYT) to produce and distribute improved stress tolerant varieties. In 2015 DLS produced 300 tons of its three varieties KDV2, KDV4 and Drought Tego, currently being sold to farmers. Another variety – SAWA – is the latest variety and its production started in 2016 as an introductory seed.
“The performance of the four varieties has been impressive even in our production fields, and we will have enough to distribute beyond the eastern region through the coming two planting seasons starting from October 2016,” added Ngila Kimotho, managing director of DLS Company.
Thermal image of the CIMMYT-Obregon station acquired from the thermal camera at a 2-meter resolution on 14 February 2013. Well-watered (cooler) plots are shown in blue, water-stressed (warmer) plots in green and red. Roads and bare soil areas have an even higher temperature and are shown in yellow. Photo: CIMMYT
EL BATAN, Mexico (CIMMYT) — Micro-satellites are emerging as an effective low-cost option to collecting data like sow date and yields on small farms across the developing world. When used in combination with bio-physical and socio-economic data, micro-satellite data can improve monitoring and evaluation, better assess and understand changes and shocks in crop-based farming systems and improve technology targeting across farmer communities.
Data taken from satellites – remotely controlled communications systems that orbit the earth – can provide different spatial, spectral and temporal resolutions for agriculture that detail crop health, irrigation use, yield, soil analysis and more.
While this information has greatly benefited the accuracy and precision of farming across the globe, it’s traditionally been a challenge to collect data on farms in the developing world. Many farmers have small pieces of land that can’t be accurately observed by most freely available satellite imagery, and it’s extremely expensive to access information that isn’t free.
However, a trend in recent years towards smaller, often private organizations sending their own micro-satellites into the sky have made access to satellite imagery much more affordable due to their smaller size, shorter life cycles and lower upfront costs.
A recent study by scientists at the International Maize and Wheat Improvement Center (CIMMYT) looked at the impact of the micro-satellite SkySat in Bihar, India, which mapped sowing dates and yields of smallholder wheat fields during the 2014-2015 and 2015-2016 growing seasons. The study then compares how well sowing date and yield were predicted when using ground data, like crop cuts and self-reports, versus using crop models, which require no on-the-ground data, to develop and parameterize prediction models.
The study “Mapping Smallholder Wheat Yields and Sowing Dates Using Micro-Satellite Data,” concludes that micro-satellite data can be used to map individual field-level characteristics of smallholder farms with significant accuracy, capturing roughly one-half and one-third of the variation in field-measured sow date and yields, respectively, when parameterized with field measures. These results suggest that micro-satellites and the data they provide will continue to serve as an important resource for mapping field-level farm characteristics, and that their utility will only improve as micro-satellites develop increased temporal frequency throughout the growing season.
Learn more about this and other recent publications from CIMMYT scientists below.
Association analysis of resistance to cereal cyst nematodes (Heterodera avenae) and root lesion nematodes (Pratylenchus neglectus and P. thornei) in CIMMYT advanced spring wheat lines for semi-arid conditions. 2016. Dababat, A.A.; Gomez-Becerra, H.F.; Erginbas-Orakci, G.; Dreisigacker, S.; Imren, M.; Toktay, H.; Elekcioglu, I.H.; Tesfamariam Mekete; Nicol, J.M.; Ansari, O.; Ogbonnaya, F.C. Breeding Science. Online First.
Developing and deploying insect resistant maize varieties to reduce pre-and post-harvest food losses in Africa. 2016. Tadele Tefera; Mugo, S.N.; Beyene, Y. Food Security 8 (1) : 211-220.
Mapping smallholder wheat yields and sowing dates using micro-satellite data. 2016. Meha Jain; Srivastava, A.; Singh, B.; Rajiv K. Joon; McDonald, A.; Royal, K.; Lisaius, M.C.; Lobell, D.B. Remote Sensing 8 (10) : 860.
Nitrogen fertilizer placement and timing affects bread wheat (Triticum aestivum) quality and yield in an irrigated bed planting system. 2016. Grahmann, K.; Govaerts, B.; Fonteyne, S.; Guzman, C.; Galaviz-Soto, A.P.; Buerkert, A.; Verhulst, N. Nutrient Cycling in Agroecosystems 106 : 185-199.
Resistance of Bt-maize (MON810) against the stem borers Busseola fusca (Fuller) and Chilo partellus (Swinhoe) and its yield performance in Kenya. 2016. Tadele Tefera; Mugo, S.N.; Mwimali, M.; Anani, B.; Tende, R.; Beyene, Y.; Gichuki, S.; Oikeh, S.O.; Nang’ayo, F.; Okeno, J.; Njeru, E.; Pillay, K.; Meisel, B.; Prasanna, B.M. Crop Protection 89 : 202-208.
Healthy soils are vital for a healthy and food secure future. (Photo: CIMMYT)
At the International Maize and Wheat Improvement Center (CIMMYT) we care deeply about one of the Earth’s most precious resources: soils. Humanity relies on soils not only for food production, but also for a range of vital ecosystem services. Soil is the vital substrate for terrestrial ecosystems, whether natural or agricultural.
Increasing population and related food demand are putting tremendous pressure on soils and too often lead to unsustainable practices jeopardizing their long term productivity. When increasing food demand is met by clearing new lands, it often occurs on more fragile soils, and/or at the expense of natural habitats. This short-term solution puts future livelihoods at risk and cannot continue.
For several decades, conservation agriculture (CA) has been a main research topic for CIMMYT’s agronomists. CA, as we define it, is based on three principles: 1) reduced or no tillage; 2) permanent soil cover; 3) crop rotation. Empirical evidence demonstrates the large benefits of CA on soil conservation/reclamation and soil health.
Work has been carried out and knowledge generated in very diverse agro-ecologies and socio-economic environments in the regions where CIMMYT works (Latin America, Southeast Asia, East and Southern Africa). Since many people use the term CA in a less scientific way, I sometimes call it innovation agriculture. I have seen many fields worldwide where our scientists work alongside farmers on sustainable intensification with a focus on these elements.
Agronomic “proof of concepts” is not sufficient, and we cannot just rely on results obtained at the field level to expect adoption at scale. Placing technical innovations, such as CA, into a farming systems context is needed to understand its adoptability and potential contribution to soil conservation, productivity, and climate change adaptation. One major adoption constraint of CA for many smallholder farmers is keeping a permanent crop cover with crop residues (zero tillage without proper soil cover can do more harm than good with regard to soil erosion).
Crop residues are often used to feed livestock, but these materials left in the field after a crop has been harvested are also essential to maintaining rich and fertile soil. Feeding the soil versus feeding animals is often a difficult choice farmers have to make. Through farming system research and participatory approaches, CIMMYT and its partners are working with farmers to develop technological and management options that provide higher profitability, improved resource use efficiency, while maintaining or improving their production base; soils.
The 2016 U.N. World Soil Day theme on Dec. 5, is “Soils and pulses, a symbiosis for life,” which resonates very well with our work: CIMMYT conducts research in maize and wheat based systems and is a strong proponent of diversification through the improved use of legumes in rotation or intercropping.
Soils draw a great deal of interest on the climate change mitigation front. They are a huge carbon reservoir with the potential to store even more under better land management and land use practices, as shown by the recent 4 per thousand initiative launched during the COP21 2015 U.N. climate talks in Paris. However, those mitigation options need to be better quantified to assess sequestration potential and not oversell options and technologies. CIMMYT scientists have recently contributed to several studies on that topic, helping to shed the light on greenhouse gas sequestration potential from technical innovations such as CA and reduced tillage.
Increased productivity through improved varieties of maize and wheat with better management practices is not only soil friendly but also provides land sparing opportunities; reducing the pressure on clearing new land preserving natural ecosystems.
The CIMMYT maize germplasm bank holds 28,000 samples of unique maize genetic diversity that could hold the key to develop new varieties farmers need. Photo: Xochiquetzal Fonseca/CIMMYT.
EL BATAN, Mexico (CIMMYT) – Biodiversity is the building block of health for all species and ecosystems, and the foundation of our food system. A lack of genetic diversity within any given species can increase its susceptibility to stress factors such as diseases, pests, heat or drought for lack of the genetic variation to respond. This can lead to devastating consequences that include crop failures and extinction of species and plant varieties. Conserving and utilizing biodiversity is crucial to ensure the food security, health and livelihoods of future generations.
The 13th meeting of the Conference of the Parties (COP 13) to the Convention on Biological Diversity will be held in Cancún, Mexico, from December 5 to 17, 2016. Established in 1993 due to global concerns over threats to biodiversity and species extinctions, the Convention on Biological Diversity is an international, legally-binding treaty with three main objectives: the conservation of biological diversity; the sustainable use of the components of biological diversity; and the fair and equitable sharing of the benefits arising out of the utilization of genetic resources.
Mexico’s Secretariat of Agriculture (SAGARPA) has invited scientists from the International Maize and Wheat Improvement Center (CIMMYT) working with the MasAgro Biodiversidad (known in English as Seeds of Discovery, or SeeD) initiative to present at COP 13 on their work to facilitate the use of maize genetic diversity, particularly through a collection of tools and resources known as the “Maize Molecular Atlas.” The presentations will focus on how resources that have been developed can aid in the understanding of germplasm stored in genebanks and collections to enable better use.
As the region of origin and as a center of diversity for maize, Mexico and Mesoamerica are home to much of the crop’s genetic variation. Thousands of samples of maize from this and other important regions are preserved in the CIMMYT germplasm bank, in trust, for the benefit of humanity. The bank’s 28,000 maize seed samples hold diversity to develop new varieties for farmers to respond to challenges such as heat, disease and drought stress. However, information on the genetic makeup and physical traits of these varieties is often limited, making the identification of the most relevant samples difficult.
Native maize varieties, known as landraces, contain a broad amount of genetic diversity that could protect food security for future generations.
SeeD works to better characterize and utilize novel genetic diversity in germplasm banks to accelerate the development of new maize and wheat varieties for the benefit of farmers. The initiative has generated massive amounts of information on the genetic diversity of maize and wheat, as well as cutting-edge software tools to aid in its use and visualization. This information and tools are freely available as global public goods for breeders, researchers, germplasm bank managers, extension agents and others, but are even more powerful when they are integrated with different types and sets of data.
Developed by the SeeD initiative, the maize molecular atlas represents an unparalleled resource for those interested in maize genetic diversity.
“You can think of the maize molecular atlas like a satellite navigation system in your car,” said Sarah Hearne, a CIMMYT scientist who leads the project’s maize component. “Information that used to be housed separately, such as maps, traffic or the locations of police officers, gas stations, restaurants and hotels, are now brought together. It’s the same with the atlas. Having access to all of these data at once in an interlinked manner allows people to make better decisions, faster,” she said.
SeeD’s maize molecular atlas includes three main types of resources: data, such as maize landrace passport data (where it came from, when it was collected, etc.), geographic information system (GIS) -derived data (what the environment was like where maize was collected; rainfall, soils, etc.), genotypic data (genetic fingerprints of maize varieties) and available phenotypic data (information on how plants grow in different conditions); knowledge, (derived from data-marker trait associations; what bits of the genome do what); and tools, including data collection software (KDSmart), data storage and query tools (Germinate) and visualization tools (CurlyWhirly).
All of these resources are available through the SeeD website, where, when used together, they can increase the effective and efficient identification and utilization of maize genetic resources.
Interestingly, one of the first benefits of this initiative was for Mexican farmers. The efforts to better characterize the collection led to the identification of landraces that were resistant to Tar Spot, a disease that is devastating many farmers’ fields in Mexico and Central America. These landraces were immediately shared with farming communities while also being utilized in breeding programs. Smallholders in particular grow crops in diverse environmental conditions. They need diverse varieties. The understanding and use of biodiversity by researchers, breeders and farmers will be crucial to ensure the use of more and genetically diverse crops.
“With the atlas we now have the ability, with fewer resources, to interlink and query across different data types in one searchable resource,” Hearne said. This will allow breeders and researchers world-wide to hone in on the genetic and physical plant traits they are looking for, to more quickly identify and use novel genetic diversity to create improved varieties adapted to their specific needs. So far about 250 researchers and students from Mexico have participated in workshops and activities to begin using the new tools. With Mexico being a very important center of diversity for many species, agricultural and beyond, the same tools could be used for other species, here and abroad.
Hearne is looking forward to sharing information about MasAgro Biodiversidad and CIMMYT’s progress at COP 13, and is hopeful about the impacts the maize molecular atlas will have on biodiversity conservation.
“Conservation isn’t just preservation, it’s use. The molecular maize atlas enables us to better utilize the genetic resources we have, but also to better understand what diversity we may still need for our collection,” she said. “If you don’t know what you have, you don’t know what you need to preserve or look for. The work of the maize molecular atlas helps to address the underlying causes of biodiversity loss by raising awareness of the importance of these resources for sustainable food production while enabling researchers world-wide to use the information for assessing their own collections and generate more diverse varieties.”
SeeD is a multi-project initiative comprising: MasAgro Biodiversidad, a joint initiative of CIMMYT and the Mexican Ministry of Agriculture (SAGARPA) through the MasAgro(Sustainable Modernization of Traditional Agriculture) project; the CGIAR Research Programs on Maize (MAIZE CRP) and Wheat (WHEAT CRP); and a computation infrastructure and data analysis project supported by the UK’s Biotechnology and Biological Sciences Research Council (BBSRC). Learn more about the Seeds of Discovery project here.
EL BATAN, Mexico (CIMMYT) — Focusing on the rapid advance in technologies to observe and record plant growth using technologies such as drones and automated sensors, 200 world-class scientists from over 20 countries will gather in Mexico from December 13 to 15 for the 4th International Plant Phenotyping Symposium.
Aiming to make breeding for food crops faster and more effective, experts will share news on the latest tools to measure plant traits and, combined with cutting-edge genetics and statistics, sharpen their understanding of how crops adapt to the environment.
“The ‘phenotype’ is the observable physical traits and behavior of an organism” said Matthew Reynolds, distinguished scientist and wheat physiologist at the Mexico-based International Maize and Wheat Improvement Center (CIMMYT) which, together with the International Plant Phenotyping Network, is organizing and hosting the event.
“In plant breeding, measuring crop traits in the field is largely prerequisite to genetic analyses,” Reynolds added. “A new generation of high-throughput phenotyping technologies based on remote sensing represents a giant step forward.”
DNA-based technologies such as molecular markers have immense potential to hone selection or provide useful information about target traits, according to Reynolds. “But now a revolution in plant phenotyping is taking place, using non-invasive technologies based on reflected light and near-light radiation from plant tissue, to assess the vigor and performance of crop trials,” he explained. “These developments promise to dramatically expand the scale and speed of phenotyping as well as the application of molecular tools in breeding.”
Bucking trends, boosting breeding gains
Trends suggest that crop breeding must gear up to feed a rapidly rising and more prosperous global population, but that breeding impacts are increasingly constrained by changing climates and new, more deadly crop diseases. “In the case of wheat, for example, yields must grow by at least 1.4 percent each year from now to 2030 to avoid critical food shortages, but since the 1990s, wheat’s yield growth rate has been far below that, at around 0.5 percent per year,” Reynolds said.
Emerging phenotyping technologies include automated or remote-controlled devices, such as field-level sensors, drone-mounted cameras or even satellites. As one example, experts from the John Innes Centre and the Earlham Institute in Britain will describe one such automated system they use to capture high-resolution data on crop growth, for plotting and analysis against detailed environmental data using cutting-edge models.
Interpreting plant images from remote sensors has proven a challenge. University of Nebraska scientists will present alternatives based on mathematical measurement and analysis of the volume of a plant’s silhouette and above-ground structure.
“In addition to learning from each other’s experiences, a half day is dedicated to drafting position papers on priority areas for future research,” Reynolds said. “Finally, a keynote talk and discussion will consider ways to harmonize the many phenotyping platforms that have emerged in recent years.”
Click here to view or download the book of abstracts of the event.
A suite of simple, climate-smart farming practices predicated for years by agricultural scientists holds the key to resource conservation, climate change and reduced pollution in South Asia. Photo: CIMMYT
EL BATAN, Mexico (CIMMYT) — Recent media reports show that the 19 million inhabitants of New Delhi are under siege from a noxious haze generated by traffic, industries, cooking fires and the burning of over 30 million tons of rice straw on farms in the neighboring states of Haryana and Punjab.
However, farmers who rotate wheat and rice crops in their fields and deploy a sustainable agricultural technique known as “zero tillage” can make a significant contribution to reducing smog in India’s capital, helping urban dwellers breathe more easily.
Since the 1990s, scientists at the International Maize and Wheat Improvement Center (CIMMYT) have been working with national partners and advanced research institutes in India to test and promote reduced tillage which allows rice-wheat farmers of South Asia to save money, better steward their soil and water resources, cut greenhouse gas emissions and stop the burning of crop residues.
The key innovation involves sowing wheat seed directly into untilled soil and rice residues in a single tractor pass, a method known as zero tillage. Originally deemed foolish by many farmers and researchers, the practice or its adaptations slowly caught on and by 2008 were being used to sow wheat by farmers on some 1.8 million hectares in India.
Scientists and policymakers are promoting the technique as a key alternative for residue burning and to help clear Delhi’s deadly seasonal smog.
Burning soils the air, depletes the soil
“Rice-wheat rotations in Bangladesh, India, Nepal and Pakistan account for nearly a quarter of the world’s food production and constitute a key source of grain and income in South Asia, home to more than 300 million undernourished people,” said Andy McDonald, a cropping systems agronomist at CIMMYT. “But unsustainable farming practices threaten the region’s productivity and are worsening global climate change.”
The burning of paddy straw is one example, according to expert studies. Besides triggering costly respiratory ailments in humans and animals in farm regions and urban centers like Delhi, burning rice residues depletes soil nutrients, with estimated yearly losses in Punjab alone of 3.9 million tons of organic carbon, 59,000 tons of nitrogen, 20,000 tons of phosphorus and 34,000 tons of potassium, according to M.L. Jat, a senior agronomist at CIMMYT, who leads CIMMYT’s contributions to “climate-smart” villages in South Asia, as part of the CGIAR Research Program on Climate Change, Agriculture and Food Security (CCAFS).
The Turbo Happy Seeder allows farmers to sow a rotation crop directly into the residues of a previous crop—in this case, wheat seed into rice straw—without plowing, a practice that raises yields, saves costs and promotes healthier soil and cleaner air. Inset: Agricultural engineer H.S. Sidhu (left), of the Borlaug Institute for South Asia (BISA), who has helped test and refine and the seeder, visits a zero tillage plot with Dr. B.S. Sidhu, agricultural commissioner of Punjab State. Photo: CIMMYT
Zero tillage: A lot to like
Traditional tillage for sowing wheat in northern India involves removing or burning rice straw and driving tractor-drawn implements back and forth over fields to rebuild a soil bed from the rice paddy, a costly and protracted process.
Zero tillage cuts farmers’ costs and provides better yields. By eliminating plowing, farmers can sow wheat up to two weeks earlier. This allows the crop to fill grain before India’s withering pre-Monsoon heat arrives — an advantage that is lost under conventional practices.
A 2016 study in Bihar state showed that farmers’ annual income increased by an average 6 percent when they used zero tillage to sow wheat, due both to better yields and savings in diesel fuel through reduced tractor use.
Zero tillage also diminishes farmers’ risk from erratic precipitation, according to Jat. “A new study in Haryana has shown that in wet years when conventionally-sown wheat fields are waterlogged, zero-tilled crops can produce 16 percent more grain.”
Environmental and climate change benefits include 93 kilograms less greenhouse gas emissions per hectare. “In the long run, retaining crop residues builds up soil organic matter and thereby reduces farming’s carbon footprint,” Jat explained.
Zero-tilled wheat also requires 20 to 35 percent less irrigation water, slowing depletion of the region’s rapidly-dwindling underground water reserves and putting money in farmers’ pockets by reducing their need to pump.
“It’s impressive that a single practice provides such a broad set of benefits,” said McDonald, who leads CIMMYT’s Cereal Systems Initiative for South Asia (CSISA).
Specialized seed planters sell slowly
Farmer awareness is growing, but putting aside the plow is not an easy proposition for some. In particular, zero tillage requires use of a special, tractor-mounted implement which, in a single pass, chops rice residues, opens a rut in the soil, and precisely deposits and covers the seed.
Development of this special seeder was first funded by the Australian Centre for International Agricultural Research (ACIAR) and led by Punjab Agricultural University, with contributions from CIMMYT and other organizations. The latest version, the Turbo Happy Seeder, costs $1,900 — an investment that many farmers still struggle to make.
“As an alternative, we’ve been saying that not all farmers need to own a seeder,” Jat observed. “Many can simply hire local service providers who have purchased the seeder and will sow on contract.” In Bihar and the neighboring state of Uttar Pradesh, the number of zero-tillage service providers rose from only 17 in 2012 to more than 1,900 in 2015, according to Jat.
Given New Delhi’s smog troubles, Haryana and Punjab policymakers are adding support to avoid burning rice straw. “The government of Haryana has taken a policy decision to aggressively promote the seeder for zero tillage and residue management and to provide 1,900 seeders on subsidy this year,” said Suresh Gehlawat, assistant director of agriculture for that state, in a recent statement.
On the horizon: Zero tillage for rice
As part of these efforts, CIMMYT scientists and partners are testing and promoting with farmers a suite of resource-conserving practices. These include precision land levelling, which saves water and improves productivity, as well as directly sowing rice into untilled, non-flooded plots.
“The practice of direct-seeded rice requires less labor, raising farmers’ profits by as much as $130 per hectare over paddy-grown rice,” said Jat. “Moreover, growing rice in non-flooded fields uses 25 percent less water and reduces the emission of methane, a greenhouse gas 200 times more powerful than carbon dioxide, by 20 kilograms per hectare.”
CIMMYT scientist Ravi Singh inspects wheat at the quarantined UG99 wheat stem rust screening nursery in Njoro, Kenya. Photo: D. Hansen/University of Minnesota
EL BATAN, Mexico — Leaf rust is increasingly having an impact on durum wheat production evidenced by the appearance of races with virulence to widely grown cultivars in many durum producing areas worldwide, according to a recent study published by researchers at the International Maize and Wheat Improvement Center (CIMMYT), the United States Department of Agriculture, North Dakota State University and University of Minnesota Twin Cities.
Durum wheat is a major staple food used for pasta, couscous, bread and more across the globe, especially in developing countries. It is particularly important in developing countries where it often represents a large portion of total wheat planted as well as a major staple food. It is also attractive to farmers due to its adaptability to arid climate conditions, marginal soils and relatively low water requirements.
Despite this broad adaptability, durum wheat production is often limited by various fungal diseases including rusts. And while durum wheat is considered generally more resistant to rust than other types of wheat, new races of the leaf rust pathogen, virulent to widely grown durum cultivars in several production areas, are increasingly impacting production.
In 2001, a virulent rust race emerged in northwestern Mexico, which overcame the resistance of widely adapted durum wheat cultivars from CIMMYT which had been previously been resistant to rust for over 25 years. Throughout the early 2000s, increased susceptibility of durum wheat to rust was measured globally, including the Mediterranean basin which produces over half the world’s durum wheat, and constitutes for over 75 percent of its growing area. The United States measured a race similar to that identified in Mexico in California and then in Kansas, suggesting the likely spread of the race to the northern Great Plains where over half of durum wheat is produced in the United States.
In response to the leaf rust epidemics in Mexico, extensive screening of the CIMMYT durum germplasm, resulted in the identification of several effective leaf rust resistance genes. The study “Genome-Wide Association Mapping of Leaf Rust Response in a Durum Wheat Worldwide Germplasm Collection” also identified 14 previously uncharacterized loci associated with leaf rust response in durum wheat. This discovery is a significant step in identifying useful sources of resistance that can be used to broaden the leaf rust resistance spectrum in durum wheat germplasm globally.
Learn more about this study and more from CIMMYT scientists, below.
Dissection of heat tolerance mechanism in tropical maize. 2016. Dinesh, A.; Patil, A.; Zaidi, P.H.; Kuchanur, P.H.; Vinayan, M.T.; Seetharam, K.; Ameragouda. Research on Crops 17 (3): 462-467.
Genetic diversity, linkage disequilibrium and population structure among CIMMYT maize inbred lines, selected for heat tolerance study. 2016. Dinesh, A.; Patil, A.; Zaidi, P.H.; Kuchanur, P.H.; Vinayan, M.T.; Seetharam, K. Maydica 61 (3): M29.
Genome-wide association for plant height and flowering time across 15 tropical maize populations under managed drought stress and well-watered conditions in Sub-Saharan Africa. 2016. Wallace, J.G.; Zhang, X.; Beyene, Y.; Fentaye Kassa Semagn; Olsen, M.; Prasanna, B.M.; Buckler, E. Crop Science 56(5): 2365-2378.
Line x testers analysis of tropical maize inbred lines under heat stress for grain yield and secondary traits. 2016. Dinesh, A.; Patil, A.; Zaidi, P.H.; Kuchanur, P.H.; Vinayan, M.T.; Seetharam, K. Maydica: 59.
Genome-wide association mapping of leaf rust response in a durum wheat worldwide germplasm collection. 2016. Aoun, M.; Breiland, M.; Turner, M.K.; Loladze, A.; Shiaoman Chao; Xu, S.; Ammar, K.; Anderson, J.A.; Kolmer, J.A.; Acevedo, M. The Plant Genome 9 (3): 1-24.
CIMMYT representatives at IAC (L-R) Prashant Vikram, Ravi Singh, Cynthia O.R, Laura Bouvet, Sukhwinder-Singh, Martin Kropff, Kevin Pixley and Gilberto Salinas. Photo: CIMMYT
EL BATAN, Mexico (CIMMYT) – Researchers gathered last week at the International Agrobiodiversity Conference in New Delhi to improve global collaboration on harnessing genes in breeding that can help wheat withstand the effects of climate change.
Wheat is the most widely cultivated staple food in the world, providing 20 percent of the protein and calories consumed worldwide and up to 50 percent in developing countries. It is also particularly vulnerable to climate change, since the crop thrives in cooler conditions. Research has shown wheat yields drop 6 percent for each 1 degree Celsius rise in temperature, and that warming is already holding back yield gains in wheat-growing mega-regions like South Asia.
The International Maize and Wheat Improvement Center’s (CIMMYT) genebank serves as a vital source of genetic information and biodiversity. Breeders use this information to accelerate the development of wheat resilient to climate change by identifying varieties that display valuable traits like drought and heat-stress tolerance, which allow them to flourish despite stressful conditions.
However, all this genetic information is incredibly dense and requires filtering before breeders can efficiently use that information, according to Sukhwinder Singh, head of the wheat pre-breeding team at CIMMYT’s Seeds of Discovery (SeeD) initiative.
“Using new genes to improve wheat, or any crop, is incredibly difficult because often along with the desired traits, come numerous undesirable traits,” said Singh. “That’s where pre-breeding comes in – we essentially purify this huge pool of good and bad traits by identifying useful genes, like heat tolerance, then make these traits available in a form that’s easier for wheat breeders to access and use.”
Pre-breeding is done through cutting-edge, cost-effective technologies that characterize the genetic information of CIMMYT’s wheat genebank. Using these tools, nearly 40 percent of the 150,000 seed samples of wheat in the bank have undergone high-throughput genetic characterization, a process that allows pre-breeders to rapidly identify desirable traits in the varieties.
A recent successful example of pre-breeding was highlighted in a report that genetically characterized a collection of 8,400 centuries-old Mexican wheat landraces adapted to varied and sometimes extreme conditions, offering a treasure trove of potential genes to combat wheat’s climate-vulnerability.
“Pre-breeding helps us better understand and gather more information on what genetic traits are available in CIMMYT’s wheat genebank, so researchers can have more access to a wider variety of information than ever before,” said Prashant Vikram, wheat researcher who is also working with the pre-breeding team at CIMMYT.
However, as new genomics tools continue to develop, capacity building for researchers is necessary to ensure the potential impacts of the genebank’s biodiversity is fully realized and equitably accessible, said Kevin Pixley, SeeD project leader and program director of CIMMYT’s Genetic Resources Program.
During the IAC partners, scientists, students, and stakeholders from across the globe provided feedback on SeeD and pre-breeding initiatives, while CIMMYT led discussions on how to build genebank biodiversity for future food security and sustainable development. Increasing partnerships and multidisciplinary projects for stronger impact were identified as key needs for future initiatives.
Trainees work with KDSmart phenotyping technology, one of the subjects taught in the new SeeD distance learning modules. Photo: G. Salinas/CIMMYT
EL BATAN, Mexico (CIMMYT) — An online learning platform created in partnership with the Seeds of Discovery (SeeD) initiative will revolutionize the project’s capacity development efforts, allowing SeeD to reach more users than ever before.
Distance learning modules consisting of practical and theory modules about how to enhance the use of genetic diversity in wheat and maize, will allow anyone in the world to benefit from SeeD’s collection of knowledge and tools regardless of location or income. These new distance learning modules are free and will be available online to the public in the future.
SeeD works to unlock and utilize novel genetic diversity held in genebanks to accelerate the development of improved maize and wheat varieties. The initiative has generated massive amounts of invaluable information on the genetic diversity of maize and wheat, as well as cutting edge software tools to aid in its use and visualization.
“This information and tools have been made publicly available so that breeders and researchers around the world can develop improved crop varieties,” said Gilberto Salinas, head of capacity development at the SeeD initiative. “However, if people don’t know how to effectively utilize these datasets and software, the information is useless,” he said.
SeeD offers workshops on genetic diversity analysis, pre-breeding, and software tools will be offered free of charge several times a year, but space is limited, meaning that only a few researchers can be trained on SeeD’s data and technology each year.
“These modules will ensure that anyone can access and learn to effectively utilize our products, thus enabling the next generation of breeders and agricultural researchers in the tools that they will need to improve food security around the world,” Salinas said.
SeeD and CIMMYT’s first distance-learning module, which is hosted on the Moodle online learning platform, was developed by Laura Bouvet, a Ph.D. candidate in the department of plant science at Britain’s University of Cambridge, working with the National Institute of Agricultural Botany (NIAB). Bouvet, who participated in a three-month internship with SeeD said she is very excited about the number of people the modules will reach.
“So much information has been generated through the Seeds of Discovery project in terms of data and tools, and it’s very important that people can access and utilize this information for the greater good,” she said. “These modules will complement SeeD workshops and will allow for higher impact of everything that has been generated through SeeD.”
KDSmart, one of the subjects taught in the new SeeD distance learning modules.
The first module focuses on theory, introducing genotypic data, its importance for genetic diversity, how it is used, as well as the technologies that are used to generate and analyze the data.
The second module focuses on practice, guiding users through the process of using KDSmart, an Android based application to record phenotypic data, information on the physical traits of maize and wheat varieties. This module is being developed with the participation of several researchers from SeeD and the Genetic Resources Program led by Gilberto Salinas.
The modules also include two videos created by Bouvet in partnership with SeeD and CIMMYT, one to explain the Seeds of Discovery project, and another to introduce the platform to show how the modules can help prospective users solve problems they may face in their research.
The modules are directed at postgraduate students, crop breeders, university faculty members, and researchers. Currently, the modules and videos are available only in Spanish language, but English versions will be developed in the near future to reach even more people interested in genetic diversity.
“These distance learning modules are for everyone who wants to learn about genetic diversity, which is crucial to increase crop yields and is one of several important solutions to tackle climate change,” Bouvet said. “With distance learning modules, SeeD will be able to reach many more people, so that those without the time or financial means to physically come to CIMMYT can still benefit from their workshops and learn to utilize genetic diversity.”
SeeD is a multi-project initiative comprising: MasAgro Biodiversidad, a joint initiative of CIMMYT and the Mexican Ministry of Agriculture (SAGARPA) through the MasAgro(Sustainable Modernization of Traditional Agriculture) project; the CGIAR Research Programs on Maize (MAIZE CRP) and Wheat (WHEAT CRP); and a computation infrastructure and data analysis project supported by the UK’s Biotechnology and Biological Sciences Research Council (BBSRC). Learn more about the Seeds of Discovery project here.
![Cameras and other sensors mounted on flying devices like this blimp [remote-control quadcopter] provide crop researchers with important visual and numerical information about crop growth, plant architecture and photosynthetic traits, among other characteristics. Photo: Emma Quilligan/CIMMYT](http://staging.cimmyt.org/wp-content/uploads/2016/12/Blimp-EmmaQuilligan.jpg)
