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Theme: Innovations

Working with smallholders to understand their needs and build on their knowledge, CIMMYT brings the right seeds and inputs to local markets, raises awareness of more productive cropping practices, and works to bring local mechanization and irrigation services based on conservation agriculture practices. CIMMYT helps scale up farmers’ own innovations, and embraces remote sensing, mobile phones and other information technology. These interventions are gender-inclusive, to ensure equitable impacts for all.

Harnessing medical technology and global partnerships to drive gains in food crop productivity

Written by Mike Listman on . Posted in Features.

Ulrich Schurr (left), of Germany’s Forschungszentrum Jülich research center and chair of the International Plant Phenotyping Network (IPPN), and Matthew Reynolds, wheat physiologist of the International Maize and Wheat Improvement Center (CIMMYT), are promoting global partnerships in phenotyping to improve critical food crops, through events like the recent International Crop Phenotyping Symposium. Photo: M.Listman/CIMMYT
Ulrich Schurr (L), of Germany’s Forschungszentrum Jülich research center and chair of the International Plant Phenotyping Network, and Matthew Reynolds, wheat physiologist with the International Maize and Wheat Improvement Center, are promoting global partnerships in phenotyping to improve critical food crops, through events like the recent International Crop Phenotyping Symposium. Photo: CIMMYT/Mike Listman

EL BATÁN, Mexico (CIMMYT) — Global research networks must overcome nationalist and protectionist tendencies to provide technology advances the world urgently needs, said a leading German scientist at a recent gathering in Mexico of 200 agricultural experts from more than 20 countries.

“Agriculture’s critical challenges of providing food security and better nutrition in the face of climate change can only be met through global communities that share knowledge and outputs; looking inward will not lead to results,” said Ulrich Schurr, director of the Institute of Bio- and Geosciences of the Forschungszentrum Jülich research center, speaking at the 4th International Plant Phenotyping Symposium

One such community is the International Plant Phenotyping Network (IPPN), chaired by Schurr and co-host of the symposium in December, with the Mexico-based International Maize and Wheat Improvement Center, known by its Spanish acronym, CIMMYT.

Adapting medical sensors helps crop breeders see plants as never before

“Phenotyping” is the high-throughput application of new technology — including satellite images, airborne cameras, and multi-spectral sensors mounted on robotic carts — to the age-old art of measuring the traits and performance of breeding lines of maize, wheat and other crops, Schurr said.

“Farmers domesticated major food crops over millennia by selecting and using seed of individual plants that possessed desirable traits, like larger and better quality grain,” he explained. “Science has helped modern crop breeders to ‘fast forward’ the process, but breeders still spend endless hours in the field visually inspecting experimental plants. Phenotyping technologies can expand their powers of observation and the number of lines they process each year.”

Adapting scanning devices and protocols pioneered for human medicine or engineering, phenotyping was initially confined to labs and other controlled settings, according to Schurr.

“The push for the field started about five years ago, with the availability of new high-throughput, non-invasive devices and the demand for field data to elucidate the genetics of complex traits like yield or drought and heat tolerance,” he added.

Less than 10 years ago, Schurr could count on the fingers of one hand the number of institutions working on phenotyping. “Now, IPPN has 25 formal members and works globally with 50 institutions and initiatives.”

Cameras and other sensors mounted on flying devices like this blimp [remote-control quadcopter] provide crop researchers with important visual and numerical information about crop growth, plant architecture and photosynthetic traits, among other characteristics. Photo: Emma Quilligan/CIMMYT
Cameras and other sensors mounted on flying devices like this blimp provide crop researchers with important visual and numerical information about crop growth, plant architecture and photosynthetic traits, among other characteristics. Photo: E. Quilligan/CIMMYT
Many ways to see plants and how they grow

So-called “deep” phenotyping uses technologies such as magnetic resonance imaging, positron emission and computer tomography to identify, measure and understand “invisible” plant parts, systems and processes, including roots and water capture and apportionment.

In controlled environments such as labs and greenhouses, researchers use automated systems and environmental simulation to select sources of valuable traits and to gain insight on underlying plant physiology that is typically masked by the variation found in fields, according to Schurr.

“Several specialists in our symposium described automated lab setups to view and analyze roots and greenhouse systems to assess crop shoot geometry, biomass accumulation and photosynthesis,” he explained. “These are then linked to crop simulation models and DNA markers for genes of important traits.”

Schurr said that support for breeding and precision agriculture includes the use of cameras or other sensors that take readings from above plant stands and crop rows in the field.

“These may take the form of handheld devices or be mounted on autonomous, robotic carts,” he said, adding that the plants can be observed using normal light and infrared or other types of radiation reflected from the plant and soil.

“The sensors can also be mounted on flying devices including drones, blimps, helicopters or airplanes. This allows rapid coverage of a larger area and many more plants than are possible through visual observation alone by breeders walking through a field.”

In the near future, mini-satellites equipped with high-resolution visible light sensors to capture and share aerial images of breeding plots will be deployed to gather data in the field, according to symposium participants.

Bringing high-flying technologies to earth

As is typical with new technologies and approaches to research, phenotyping for crop breeding and research holds great promise but must overcome several challenges, including converting images to numeric information, managing massive and diverse data, interfacing effectively with genomic analysis and bringing skeptical breeders on board.

“The demands of crop breeding are diverse — identifying novel traits, studies of genetic resources and getting useful diversity into usable lines, choosing the best parents for crosses and selecting outstanding varieties in the field, to name a few,” Schurr explained. “From the breeders’ side, there’s an opportunity to help develop novel methods and statistics needed to harness the potential of phenotyping technology.”

A crucial linkage being pursued is that with genomic analyses. “Studies often identify genome regions tied to important traits like photosynthesis as ‘absolute,’ without taking into account that different genes might come into play depending on, say, the time of day of measurement,” Schurr said. “Phenotyping can shed light on such genetic phenomena, describing the same thing from varied angles.”

Speaking at the symposium, Greg Rebetzke, a research geneticist since 1995 at Australia’s Commonwealth Scientific and Industrial Research Organisation (CSIRO), said that the effective delivery in commercial breeding of “phenomics” — a term used by some to describe the high-throughput application of phenotyping in the field — is more a question of what and when, not how.

“It’s of particular interest in breeding for genetically complex traits like drought tolerance,” Rebetzke said. “Phenomics can allow breeders to screen many more plants in early generations of selection, helping to bring in more potentially useful genetic diversity. This genetic enrichment with key alleles early on can significantly increase the likelihood of identifying superior lines in the later, more expensive stages of selecting, which is typically done across many different environments.”

Moreover, where conventional breeding generally uses “snaphot” observations of plants at different growth stages, phenotyping technology can provide detailed time-series data for selected physiological traits and how they are responding to their surroundings—say, well-watered versus dry conditions—and for a much greater diversity and area of plots and fields.

Phenotyping is already being translated from academic research to commercial sector development and use, according to Christoph Bauer, leader of phenotyping technologies at KWS, a German company that breeds for and markets seed of assorted food crops.

“It takes six-to-eight years of pre-breeding and breeding to get our products to market,” Bauer said in his symposium presentation. “In that process, phenotyping can be critical to sort the ‘stars’ from the ‘superstars’.”

Commercial technology providers for phenotyping are also emerging, according to Schurr, helping to ensure robustness, the use of best practices and alignment with the needs of academic and agricultural industry customers.

“The partnership triad of academia, commercial providers and private seed companies offers a powerful avenue for things like joint analysis of genotypic variation in the pre-competitive domain or testing of cutting-edge technology,” he added.

On the final morning of the symposium, participants broke off into groups to discuss special topics, including the cost effectiveness of high-throughput phenotyping and its use to analyze crop genetic resources, measuring roots, diagnostics of reproductive growth, sensor technology needs, integrating phenotypic data into crop models, and public-private collaboration.

Schurr said organizations like CIMMYT play a crucial role.

“CIMMYT does relevant breeding for millions of maize and wheat farmers — many of them smallholders — who live in areas often of little interest for large-scale companies, providing support to the national research programs and local or regional seed producers that serve such farmers,” Schurr said. “The center also operates phenotyping platforms worldwide for traits like heat tolerance and disease resistance and freely spreads knowledge and technology.”

Improved maize offers new economic opportunity to Kenyan family

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Mbula and her son Kivanga shell the cobs of KDV2 maize, an early maturing drought tolerant variety.
Mbula and her son Kivanga shell the cobs of KDV2 maize, an early maturing drought tolerant variety. Photo: B. Wawa/CIMMYT

NAIROBI, Kenya (CIMMYT) – Millions of women across Africa continue to drive agriculture and for Francisca Mbula, a mother of five in her late 50s, her successful journey in farming is credited to her 30-year old eldest son Nzioka Kivanga. Mbula’s family lives in Machakos County, a semi-arid area situated in the eastern part of Kenya’s capital Nairobi, and like thousands of other families, they depend on small-scale rainfed farming, which remains a key livelihood even though it is adversely affected by climatic shocks.

Machakos, like several other counties in eastern Kenya, was badly hit with drought that ravaged various parts of the country during the October-December short rains.

Kivanga is not in formal employment but a dedicated farmer. “Sometimes I see his lack of formal employment as a blessing, because without his hard work and zeal for farming I would not have learned about Drought Tego and KDV2 varieties that have changed my farming,” explained Mbula.

Both Drought Tego and KDV2 are modern improved varieties that are drought tolerant and offer better resistance to common maize diseases in this region. He started planting KDV2, an improved open pollinated variety, during March 2014 and a year later planted Drought Tego, an improved hybrid

A rear view of Kivanga’s new home, built from the income generated using improved maize varieties.
A rear view of Kivanga’s new home, built from the income generated using improved maize varieties. Photo: B. Wawa/CIMMYT

“The KDV2 maize is very sweet and good for our Muthokoi meal made from maize and beans, because its grains are small so you don’t need a lot of beans. This helps a lot to cut costs,” said Kivanga. The two varieties are produced and marketed by the Dryland Seed Company (DLS) where Kivanga first learned and purchased at the company shop in Machakos in 2014.

KDV2 and Drought Tego’s yield success has brought many economic gains to Kivanga than he would have otherwise never earned planting traditional varieties. “I started building my house in 2013. It was very slow because I did not have cash to keep the construction going,” said Kivanga. “From the seven bags of KDV2 maize harvest I sold the extra five bags for 3,600 shillings (USD $36) each, which helped me to build up the house from the foundation to the walls.” The seven 90 kilogram (kg) bags of maize harvested from a 2 kg packet of KDV2 variety was four times more than what Kivanga and his mother would have harvested from their recycled local varieties.

When Kivanga got his harvest from Tego in September 2015, it surpassed his expectations. From the 2 kg packet of Drought Tego, Kivanga harvested ten 90 kg bags and another five bags from KDV2 in the same season.

Mbula holds a full cob from the Drought Tego variety, expected to provide her and her family a successful harvest.
Mbula holds a full cob from the Drought Tego variety, expected to provide her and her family a successful harvest. Photo: B. Wawa/CIMMYT

“With this harvest I was able to plaster all the walls and buy iron sheets for the roofing,” Kivanga said while pointing at his nearly finished house, which he plans to finish in 2016 after the August harvest.

DLS has played a major role in supporting farmers’ access to improved seed by creating awareness about available varieties and their suitability based on agro-ecological zone and planting season.

“KDV varieties are early maturing, so we advise farmers to plant these varieties during the short rains and Drought Tego during the long rains since it is medium maturing,” said Jecinta Mwende, a sales representative at DLS. “This is a sure way of farmers getting higher yields.”

DLS is a key partner collaborating with the International Maize and Wheat Improvement Center (CIMMYT) to produce and distribute improved stress tolerant varieties. In 2015 DLS produced 300 tons of its three varieties KDV2, KDV4 and Drought Tego, currently being sold to farmers. Another variety – SAWA – is the latest variety and its production started in 2016 as an introductory seed.

“The performance of the four varieties has been impressive even in our production fields, and we will have enough to distribute beyond the eastern region through the coming two planting seasons starting from October 2016,” added Ngila Kimotho, managing director of DLS Company.

New Publications: Rise of micro-satellites offers cost-effective way to collect data on smallholder farms

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Thermal image of the CIMMYT-Obregon station acquired from the thermal camera at a 2-meter resolution on 14 February 2013. Well-watered (cooler) plots are shown in blue, water-stressed (warmer) plots in green and red. Roads and bare soil areas have an even higher temperature and are shown in yellow. Photo: CIMMYT
Thermal image of the CIMMYT-Obregon station acquired from the thermal camera at a 2-meter resolution on 14 February 2013. Well-watered (cooler) plots are shown in blue, water-stressed (warmer) plots in green and red. Roads and bare soil areas have an even higher temperature and are shown in yellow. Photo: CIMMYT

EL BATAN, Mexico (CIMMYT) — Micro-satellites are emerging as an effective low-cost option to collecting data like sow date and yields on small farms across the developing world. When used in combination with bio-physical and socio-economic data, micro-satellite data can improve monitoring and evaluation, better assess and understand changes and shocks in crop-based farming systems and improve technology targeting across farmer communities.

Data taken from satellites – remotely controlled communications systems that orbit the earth – can provide different spatial, spectral and temporal resolutions for agriculture that detail crop health, irrigation use, yield, soil analysis and more.

While this information has greatly benefited the accuracy and precision of farming across the globe, it’s traditionally been a challenge to collect data on farms in the developing world. Many farmers have small pieces of land that can’t be accurately observed by most freely available satellite imagery, and it’s extremely expensive to access information that isn’t free.

However, a trend in recent years towards smaller, often private organizations sending their own micro-satellites into the sky have made access to satellite imagery much more affordable due to their smaller size, shorter life cycles and lower upfront costs.

A recent study by scientists at the International Maize and Wheat Improvement Center (CIMMYT) looked at the impact of the micro-satellite SkySat in Bihar, India, which mapped sowing dates and yields of smallholder wheat fields during the 2014-2015 and 2015-2016 growing seasons. The study then compares how well sowing date and yield were predicted when using ground data, like crop cuts and self-reports, versus using crop models, which require no on-the-ground data, to develop and parameterize prediction models.

The study “Mapping Smallholder Wheat Yields and Sowing Dates Using Micro-Satellite Data,” concludes that micro-satellite data can be used to map individual field-level characteristics of smallholder farms with significant accuracy, capturing roughly one-half and one-third of the variation in field-measured sow date and yields, respectively, when parameterized with field measures. These results suggest that micro-satellites and the data they provide will continue to serve as an important resource for mapping field-level farm characteristics, and that their utility will only improve as micro-satellites develop increased temporal frequency throughout the growing season.

Learn more about this and other recent publications from CIMMYT scientists below.

  1. Association analysis of resistance to cereal cyst nematodes (Heterodera avenae) and root lesion nematodes (Pratylenchus neglectus and P. thornei) in CIMMYT advanced spring wheat lines for semi-arid conditions. 2016. Dababat, A.A.; Gomez-Becerra, H.F.; Erginbas-Orakci, G.; Dreisigacker, S.; Imren, M.; Toktay, H.; Elekcioglu, I.H.; Tesfamariam Mekete; Nicol, J.M.; Ansari, O.; Ogbonnaya, F.C. Breeding Science. Online First.
  2. Developing and deploying insect resistant maize varieties to reduce pre-and post-harvest food losses in Africa. 2016. Tadele Tefera; Mugo, S.N.; Beyene, Y. Food Security 8 (1) : 211-220.
  3. Mapping smallholder wheat yields and sowing dates using micro-satellite data. 2016. Meha Jain; Srivastava, A.; Singh, B.; Rajiv K. Joon; McDonald, A.; Royal, K.; Lisaius, M.C.; Lobell, D.B. Remote Sensing 8 (10) : 860.
  4. Nitrogen fertilizer placement and timing affects bread wheat (Triticum aestivum) quality and yield in an irrigated bed planting system. 2016. Grahmann, K.; Govaerts, B.; Fonteyne, S.; Guzman, C.; Galaviz-Soto, A.P.; Buerkert, A.; Verhulst, N. Nutrient Cycling in Agroecosystems 106 : 185-199.
  5. Resistance of Bt-maize (MON810) against the stem borers Busseola fusca (Fuller) and Chilo partellus (Swinhoe) and its yield performance in Kenya. 2016. Tadele Tefera; Mugo, S.N.; Mwimali, M.; Anani, B.; Tende, R.; Beyene, Y.; Gichuki, S.; Oikeh, S.O.; Nang’ayo, F.; Okeno, J.; Njeru, E.; Pillay, K.; Meisel, B.; Prasanna, B.M. Crop Protection 89 : 202-208.
Healthy soils are vital for a healthy and food secure future. (Photo: CIMMYT)

Healthy soils for a healthy, food secure future

Written by on . Posted in Director General's corner.

Healthy soils are vital for a healthy and food secure future. (Photo: CIMMYT)
Healthy soils are vital for a healthy and food secure future. (Photo: CIMMYT)

At the International Maize and Wheat Improvement Center (CIMMYT) we care deeply about one of the Earth’s most precious resources: soils. Humanity relies on soils not only for food production, but also for a range of vital ecosystem services. Soil is the vital substrate for terrestrial ecosystems, whether natural or agricultural.

Increasing population and related food demand are putting tremendous pressure on soils and too often lead to unsustainable practices jeopardizing their long term productivity. When increasing food demand is met by clearing new lands, it often occurs on more fragile soils, and/or at the expense of natural habitats. This short-term solution puts future livelihoods at risk and cannot continue.

For several decades, conservation agriculture (CA) has been a main research topic for CIMMYT’s agronomists. CA, as we define it, is based on three principles: 1) reduced or no tillage; 2) permanent soil cover; 3) crop rotation. Empirical evidence demonstrates the large benefits of CA on soil conservation/reclamation and soil health.

Work has been carried out and knowledge generated in very diverse agro-ecologies and socio-economic environments in the regions where CIMMYT works (Latin America, Southeast Asia, East and Southern Africa). Since many people use the term CA in a less scientific way, I sometimes call it innovation agriculture. I have seen many fields worldwide where our scientists work alongside farmers on sustainable intensification with a focus on these elements.

Agronomic “proof of concepts” is not sufficient, and we cannot just rely on results obtained at the field level to expect adoption at scale. Placing technical innovations, such as CA, into a farming systems context is needed to understand its adoptability and potential contribution to soil conservation, productivity, and climate change adaptation. One major adoption constraint of CA for many smallholder farmers is keeping a permanent crop cover with crop residues (zero tillage without proper soil cover can do more harm than good with regard to soil erosion).

Crop residues are often used to feed livestock, but these materials left in the field after a crop has been harvested are also essential to maintaining rich and fertile soil. Feeding the soil versus feeding animals is often a difficult choice farmers have to make. Through farming system research and participatory approaches, CIMMYT and its partners are working with farmers to develop technological and management options that provide higher profitability, improved resource use efficiency, while maintaining or improving their production base; soils.

The 2016 U.N. World Soil Day theme on Dec. 5, is “Soils and pulses, a symbiosis for life,” which resonates very well with our work: CIMMYT conducts research in maize and wheat based systems and is a strong proponent of diversification through the improved use of legumes in rotation or intercropping.

Soils draw a great deal of interest on the climate change mitigation front. They are a huge carbon reservoir with the potential to store even more under better land management and land use practices, as shown by the recent 4 per thousand initiative launched during the COP21 2015 U.N. climate talks in Paris. However, those mitigation options need to be better quantified to assess sequestration potential and not oversell options and technologies. CIMMYT scientists have recently contributed to several studies on that topic, helping to shed the light on greenhouse gas sequestration potential from technical innovations such as CA and reduced tillage.

Increased productivity through improved varieties of maize and wheat with better management practices is not only soil friendly but also provides land sparing opportunities; reducing the pressure on clearing new land preserving natural ecosystems.

Cutting-edge tools promote conservation, use of biodiversity

Written by on . Posted in News.

The CIMMYT maize germplasm bank holds 28,000 samples of unique maize genetic diversity that could hold the key to develop new varieties farmers need. Photo: Xochiquetzal Fonseca/CIMMYT.

EL BATAN, Mexico (CIMMYT) – Biodiversity is the building block of health for all species and ecosystems, and the foundation of our food system. A lack of genetic diversity within any given species can increase its susceptibility to stress factors such as diseases, pests, heat or drought for lack of the genetic variation to respond. This can lead to devastating consequences that include crop failures and extinction of species and plant varieties. Conserving and utilizing biodiversity is crucial to ensure the food security, health and livelihoods of future generations.

The 13th meeting of the Conference of the Parties (COP 13) to the Convention on Biological Diversity will be held in Cancún, Mexico, from December 5 to 17, 2016. Established in 1993 due to global concerns over threats to biodiversity and species extinctions, the Convention on Biological Diversity is an international, legally-binding treaty with three main objectives: the conservation of biological diversity; the sustainable use of the components of biological diversity; and the fair and equitable sharing of the benefits arising out of the utilization of genetic resources.

Mexico’s Secretariat of Agriculture (SAGARPA) has invited scientists from the International Maize and Wheat Improvement Center (CIMMYT) working with the MasAgro Biodiversidad (known in English as Seeds of Discovery, or SeeD) initiative to present at COP 13 on their work to facilitate the use of maize genetic diversity, particularly through a collection of tools and resources known as the “Maize Molecular Atlas.” The presentations will focus on how resources that have been developed can aid in the understanding of germplasm stored in genebanks and collections to enable better use.

As the region of origin and as a center of diversity for maize, Mexico and Mesoamerica are home to much of the crop’s genetic variation. Thousands of samples of maize from this and other important regions are preserved in the CIMMYT germplasm bank, in trust, for the benefit of humanity. The bank’s 28,000 maize seed samples hold diversity to develop new varieties for farmers to respond to challenges such as heat, disease and drought stress. However, information on the genetic makeup and physical traits of these varieties is often limited, making the identification of the most relevant samples difficult.

Native maize varieties, known as landraces, contain a broad amount of genetic diversity that could protect food security for future generations.
Native maize varieties, known as landraces, contain a broad amount of genetic diversity that could protect food security for future generations.

SeeD works to better characterize and utilize novel genetic diversity in germplasm banks to accelerate the development of new maize and wheat varieties for the benefit of farmers. The initiative has generated massive amounts of information on the genetic diversity of maize and wheat, as well as cutting-edge software tools to aid in its use and visualization. This information and tools are freely available as global public goods for breeders, researchers, germplasm bank managers, extension agents and others, but are even more powerful when they are integrated with different types and sets of data.

Developed by the SeeD initiative, the maize molecular atlas represents an unparalleled resource for those interested in maize genetic diversity.

“You can think of the maize molecular atlas like a satellite navigation system in your car,” said Sarah Hearne, a CIMMYT scientist who leads the project’s maize component. “Information that used to be housed separately, such as maps, traffic or the locations of police officers, gas stations, restaurants and hotels, are now brought together. It’s the same with the atlas. Having access to all of these data at once in an interlinked manner allows people to make better decisions, faster,” she said.

SeeD’s maize molecular atlas includes three main types of resources: data, such as maize landrace passport data (where it came from, when it was collected, etc.), geographic information system (GIS) -derived data (what the environment was like where maize was collected; rainfall, soils, etc.), genotypic data (genetic fingerprints of maize varieties) and available phenotypic data (information on how plants grow in different conditions); knowledge, (derived from data-marker trait associations; what bits of the genome do what); and tools, including data collection software (KDSmart), data storage and query tools (Germinate) and visualization tools (CurlyWhirly).

All of these resources are available through the SeeD website, where, when used together, they can increase the effective and efficient identification and utilization of maize genetic resources.

Interestingly, one of the first benefits of this initiative was for Mexican farmers. The efforts to better characterize the collection led to the identification of landraces that were resistant to Tar Spot, a disease that is devastating many farmers’ fields in Mexico and Central America. These landraces were immediately shared with farming communities while also being utilized in breeding programs. Smallholders in particular grow crops in diverse environmental conditions. They need diverse varieties. The understanding and use of biodiversity by researchers, breeders and farmers will be crucial to ensure the use of more and genetically diverse crops.

“With the atlas we now have the ability, with fewer resources, to interlink and query across different data types in one searchable resource,” Hearne said. This will allow breeders and researchers world-wide to hone in on the genetic and physical plant traits they are looking for, to more quickly identify and use novel genetic diversity to create improved varieties adapted to their specific needs. So far about 250 researchers and students from Mexico have participated in workshops and activities to begin using the new tools. With Mexico being a very important center of diversity for many species, agricultural and beyond, the same tools could be used for other species, here and abroad.

Hearne is looking forward to sharing information about MasAgro Biodiversidad and CIMMYT’s progress at COP 13, and is hopeful about the impacts the maize molecular atlas will have on biodiversity conservation.

“Conservation isn’t just preservation, it’s use. The molecular maize atlas enables us to better utilize the genetic resources we have, but also to better understand what diversity we may still need for our collection,” she said. “If you don’t know what you have, you don’t know what you need to preserve or look for. The work of the maize molecular atlas helps to address the underlying causes of biodiversity loss by raising awareness of the importance of these resources for sustainable food production while enabling researchers world-wide to use the information for assessing their own collections and generate more diverse varieties.”

SeeD is a multi-project initiative comprising: MasAgro Biodiversidad, a joint initiative of CIMMYT and the Mexican Ministry of Agriculture (SAGARPA) through the MasAgro (Sustainable Modernization of Traditional Agriculture) project; the CGIAR Research Programs on Maize (MAIZE CRP) and Wheat (WHEAT CRP); and a computation infrastructure and data analysis project supported by the UK’s Biotechnology and Biological Sciences Research Council (BBSRC). Learn more about the Seeds of Discovery project here. 

Scientists meet in Mexico to revolutionize ways of “watching” experimental plants

Written by Mike Listman on . Posted in Features.

Photo: CIMMYT
Photo: CIMMYT

EL BATAN, Mexico (CIMMYT) — Focusing on the rapid advance in technologies to observe and record plant growth using technologies such as drones and automated sensors, 200 world-class scientists from over 20 countries will gather in Mexico from December 13 to 15 for the 4th International Plant Phenotyping Symposium.

Aiming to make breeding for food crops faster and more effective, experts will share news on the latest tools to measure plant traits and, combined with cutting-edge genetics and statistics, sharpen their understanding of how crops adapt to the environment.

“The ‘phenotype’ is the observable physical traits and behavior of an organism” said Matthew Reynolds, distinguished scientist and wheat physiologist at the Mexico-based International Maize and Wheat Improvement Center (CIMMYT) which, together with the International Plant Phenotyping Network, is organizing and hosting the event.

“In plant breeding, measuring crop traits in the field is largely prerequisite to genetic analyses,” Reynolds added. “A new generation of high-throughput phenotyping technologies based on remote sensing represents a giant step forward.”

DNA-based technologies such as molecular markers have immense potential to hone selection or provide useful information about target traits, according to Reynolds. “But now a revolution in plant phenotyping is taking place, using non-invasive technologies based on reflected light and near-light radiation from plant tissue, to assess the vigor and performance of crop trials,” he explained. “These developments promise to dramatically expand the scale and speed of phenotyping as well as the application of molecular tools in breeding.”

Bucking trends, boosting breeding gains

Trends suggest that crop breeding must gear up to feed a rapidly rising and more prosperous global population, but that breeding impacts are increasingly constrained by changing climates and new, more deadly crop diseases. “In the case of wheat, for example, yields must grow by at least 1.4 percent each year from now to 2030 to avoid critical food shortages, but since the 1990s, wheat’s yield growth rate has been far below that, at around 0.5 percent per year,” Reynolds said.

Emerging phenotyping technologies include automated or remote-controlled devices, such as field-level sensors, drone-mounted cameras or even satellites. As one example, experts from the John Innes Centre and the Earlham Institute in Britain will describe one such automated system they use to capture high-resolution data on crop growth, for plotting and analysis against detailed environmental data using cutting-edge models.

Interpreting plant images from remote sensors has proven a challenge. University of Nebraska scientists will present alternatives based on mathematical measurement and analysis of the volume of a plant’s silhouette and above-ground structure.

“In addition to learning from each other’s experiences, a half day is dedicated to drafting position papers on priority areas for future research,” Reynolds said. “Finally, a keynote talk and discussion will consider ways to harmonize the many phenotyping platforms that have emerged in recent years.”

Click here to view or download the book of abstracts of the event.

Advice for India’s rice-wheat farmers: Put aside the plow and save straw to fight pollution

Written by Mike Listman on . Posted in Features.

A suite of simple, climate-smart farming practices predicated for years by agricultural scientists holds the key to resource conservation, climate change and reduced pollution in South Asia.
A suite of simple, climate-smart farming practices predicated for years by agricultural scientists holds the key to resource conservation, climate change and reduced pollution in South Asia. Photo: CIMMYT

EL BATAN, Mexico (CIMMYT) — Recent media reports show that the 19 million inhabitants of New Delhi are under siege from a noxious haze generated by traffic, industries, cooking fires and the burning of over 30 million tons of rice straw on farms in the neighboring states of Haryana and Punjab.

However, farmers who rotate wheat and rice crops in their fields and deploy a sustainable agricultural technique known as “zero tillage” can make a significant contribution to reducing smog in India’s capital, helping urban dwellers breathe more easily.

Since the 1990s, scientists at the International Maize and Wheat Improvement Center (CIMMYT) have been working with national partners and advanced research institutes in India to test and promote reduced tillage which allows rice-wheat farmers of South Asia to save money, better steward their soil and water resources, cut greenhouse gas emissions and stop the burning of crop residues.

The key innovation involves sowing wheat seed directly into untilled soil and rice residues in a single tractor pass, a method known as zero tillage. Originally deemed foolish by many farmers and researchers, the practice or its adaptations slowly caught on and by 2008 were being used to sow wheat by farmers on some 1.8 million hectares in India.

Scientists and policymakers are promoting the technique as a key alternative for residue burning and to help clear Delhi’s deadly seasonal smog.

Burning soils the air, depletes the soil

“Rice-wheat rotations in Bangladesh, India, Nepal and Pakistan account for nearly a quarter of the world’s food production and constitute a key source of grain and income in South Asia, home to more than 300 million undernourished people,” said Andy McDonald, a cropping systems agronomist at CIMMYT. “But unsustainable farming practices threaten the region’s productivity and are worsening global climate change.”

The burning of paddy straw is one example, according to expert studies. Besides triggering costly respiratory ailments in humans and animals in farm regions and urban centers like Delhi, burning rice residues depletes soil nutrients, with estimated yearly losses in Punjab alone of 3.9 million tons of organic carbon, 59,000 tons of nitrogen, 20,000 tons of phosphorus and 34,000 tons of potassium, according to M.L. Jat, a senior agronomist at CIMMYT, who leads CIMMYT’s contributions to “climate-smart” villages in South Asia, as part of the CGIAR Research Program on Climate Change, Agriculture and Food Security (CCAFS).

The Turbo Happy Seeder allows farmers to sow a rotation crop directly into the residues of a previous crop—in this case, wheat seed into rice straw—without plowing, a practice that raises yields, saves costs and promotes healthier soil and cleaner air. Inset: Agricultural engineer H.S. Sidhu (left), of the Borlaug Institute for South Asia (BISA), who has helped test and refine and the seeder, visits a zero tillage plot with Dr. B.S. Sidhu, agricultural commissioner of Punjab State. Photo: CIMMYT

Zero tillage: A lot to like

Traditional tillage for sowing wheat in northern India involves removing or burning rice straw and driving tractor-drawn implements back and forth over fields to rebuild a soil bed from the rice paddy, a costly and protracted process.

Zero tillage cuts farmers’ costs and provides better yields. By eliminating plowing, farmers can sow wheat up to two weeks earlier. This allows the crop to fill grain before India’s withering pre-Monsoon heat arrives — an advantage that is lost under conventional practices.

A 2016 study in Bihar state showed that farmers’ annual income increased by an average 6 percent when they used zero tillage to sow wheat, due both to better yields and savings in diesel fuel through reduced tractor use.

Zero tillage also diminishes farmers’ risk from erratic precipitation, according to Jat. “A new study in Haryana has shown that in wet years when conventionally-sown wheat fields are waterlogged, zero-tilled crops can produce 16 percent more grain.”

Environmental and climate change benefits include 93 kilograms less greenhouse gas emissions per hectare. “In the long run, retaining crop residues builds up soil organic matter and thereby reduces farming’s carbon footprint,” Jat explained.

Zero-tilled wheat also requires 20 to 35 percent less irrigation water, slowing depletion of the region’s rapidly-dwindling underground water reserves and putting money in farmers’ pockets by reducing their need to pump.

“It’s impressive that a single practice provides such a broad set of benefits,” said McDonald, who leads CIMMYT’s Cereal Systems Initiative for South Asia (CSISA).

Specialized seed planters sell slowly

Farmer awareness is growing, but putting aside the plow is not an easy proposition for some. In particular, zero tillage requires use of a special, tractor-mounted implement which, in a single pass, chops rice residues, opens a rut in the soil, and precisely deposits and covers the seed.

Development of this special seeder was first funded by the Australian Centre for International Agricultural Research (ACIAR) and led by Punjab Agricultural University, with contributions from CIMMYT and other organizations. The latest version, the Turbo Happy Seeder, costs $1,900 — an investment that many farmers still struggle to make.

“As an alternative, we’ve been saying that not all farmers need to own a seeder,” Jat observed. “Many can simply hire local service providers who have purchased the seeder and will sow on contract.” In Bihar and the neighboring state of Uttar Pradesh, the number of zero-tillage service providers rose from only 17 in 2012 to more than 1,900 in 2015, according to Jat.

Given New Delhi’s smog troubles, Haryana and Punjab policymakers are adding support to avoid burning rice straw. “The government of Haryana has taken a policy decision to aggressively promote the seeder for zero tillage and residue management and to provide 1,900 seeders on subsidy this year,” said Suresh Gehlawat, assistant director of agriculture for that state, in a recent statement.

On the horizon: Zero tillage for rice

As part of these efforts, CIMMYT scientists and partners are testing and promoting with farmers a suite of resource-conserving practices. These include precision land levelling, which saves water and improves productivity, as well as directly sowing rice into untilled, non-flooded plots.

“The practice of direct-seeded rice requires less labor, raising farmers’ profits by as much as $130 per hectare over paddy-grown rice,” said Jat. “Moreover, growing rice in non-flooded fields uses 25 percent less water and reduces the emission of methane, a greenhouse gas 200 times more powerful than carbon dioxide, by 20 kilograms per hectare.”

New Publications: Durum wheat is becoming more susceptible to rust globally

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CIMMYT scientist Ravi Singh inspects wheat at the quarantined UG99 wheat stem rust screening nursery in Njoro, Kenya. Photo: D. Hansen/University of Minnesota
CIMMYT scientist Ravi Singh inspects wheat at the quarantined UG99 wheat stem rust screening nursery in Njoro, Kenya. Photo: D. Hansen/University of Minnesota

EL BATAN, Mexico — Leaf rust is increasingly having an impact on durum wheat production evidenced by the  appearance of races with virulence to widely grown cultivars in many durum producing areas worldwide, according to a recent study published by researchers at the International Maize and Wheat Improvement Center (CIMMYT), the United States Department of Agriculture, North Dakota State University and University of Minnesota Twin Cities.

Durum wheat is a major staple food used for pasta, couscous, bread and more across the globe, especially in developing countries. It is particularly important in developing countries where it often represents a large portion of total wheat planted as well as a major staple food. It is also attractive to farmers due to its adaptability to arid climate conditions, marginal soils and relatively low water requirements.

Despite this broad adaptability, durum wheat production is often limited by various fungal diseases including rusts. And while durum wheat is considered generally more resistant to rust than other types of wheat, new races of the leaf rust pathogen, virulent to widely grown durum cultivars in several production areas, are increasingly impacting production.

In 2001, a virulent rust race emerged in northwestern Mexico, which overcame the resistance of widely adapted durum wheat cultivars from CIMMYT which had been previously been resistant to rust for over 25 years. Throughout the early 2000s, increased susceptibility of durum wheat to rust was measured globally, including the Mediterranean basin which produces over half the world’s durum wheat, and constitutes for over 75 percent of its growing area. The United States measured a race similar to that identified in Mexico in California and then in Kansas, suggesting the likely spread of the race to the northern Great Plains where over half of durum wheat is produced in the United States.

In response to the leaf rust epidemics in Mexico, extensive screening of the CIMMYT durum germplasm, resulted in the identification of several effective leaf rust resistance genes. The study “Genome-Wide Association Mapping of Leaf Rust Response in a Durum Wheat Worldwide Germplasm Collection” also identified 14 previously uncharacterized loci associated with leaf rust response in durum wheat. This discovery is a significant step in identifying useful sources of resistance that can be used to broaden the leaf rust resistance spectrum in durum wheat germplasm globally.

Learn more about this study and more from CIMMYT scientists, below.

  1. Dissection of heat tolerance mechanism in tropical maize. 2016. Dinesh, A.; Patil, A.; Zaidi, P.H.; Kuchanur, P.H.; Vinayan, M.T.; Seetharam, K.; Ameragouda. Research on Crops 17 (3): 462-467.
  2. Genetic diversity, linkage disequilibrium and population structure among CIMMYT maize inbred lines, selected for heat tolerance study. 2016. Dinesh, A.; Patil, A.; Zaidi, P.H.; Kuchanur, P.H.; Vinayan, M.T.; Seetharam, K. Maydica 61 (3): M29.
  3. Genome-wide association for plant height and flowering time across 15 tropical maize populations under managed drought stress and well-watered conditions in Sub-Saharan Africa. 2016. Wallace, J.G.; Zhang, X.; Beyene, Y.; Fentaye Kassa Semagn; Olsen, M.; Prasanna, B.M.; Buckler, E. Crop Science 56(5): 2365-2378.
  4. Line x testers analysis of tropical maize inbred lines under heat stress for grain yield and secondary traits. 2016. Dinesh, A.; Patil, A.; Zaidi, P.H.; Kuchanur, P.H.; Vinayan, M.T.; Seetharam, K. Maydica: 59.
  5. Genome-wide association mapping of leaf rust response in a durum wheat worldwide germplasm collection. 2016. Aoun, M.; Breiland, M.; Turner, M.K.; Loladze, A.; Shiaoman Chao; Xu, S.; Ammar, K.; Anderson, J.A.; Kolmer, J.A.; Acevedo, M. The Plant Genome 9 (3): 1-24.

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Improved genetic analysis offers faster, more precise results to crop breeders

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CIMMYT representatives at IAC (L-R) Prashant Vikram, Ravi Singh, Cynthia O.R, Laura Bouvet, Sukhwinder-Singh, Martin Kroff, Kevin Pixley and Gilberto Salinas. Photo: CIMMYT
CIMMYT representatives at IAC (L-R) Prashant Vikram, Ravi Singh, Cynthia O.R, Laura Bouvet, Sukhwinder-Singh, Martin Kropff, Kevin Pixley and Gilberto Salinas. Photo: CIMMYT

EL BATAN, Mexico (CIMMYT) – Researchers gathered last week at the International Agrobiodiversity Conference in New Delhi to improve global collaboration on harnessing genes in breeding that can help wheat withstand the effects of climate change.

Wheat is the most widely cultivated staple food in the world, providing 20 percent of the protein and calories consumed worldwide and up to 50 percent in developing countries. It is also particularly vulnerable to climate change, since the crop thrives in cooler conditions. Research has shown wheat yields drop 6 percent for each 1 degree Celsius rise in temperature, and that warming is already holding back yield gains in wheat-growing mega-regions like South Asia.

The International Maize and Wheat Improvement Center’s (CIMMYT) genebank serves as a vital source of genetic information and biodiversity. Breeders use this information to accelerate the development of wheat resilient to climate change by identifying varieties that display valuable traits like drought and heat-stress tolerance, which allow them to flourish despite stressful conditions.

However, all this genetic information is incredibly dense and requires filtering before breeders can efficiently use that information, according to Sukhwinder Singh, head of the wheat pre-breeding team at CIMMYT’s Seeds of Discovery (SeeD) initiative.

“Using new genes to improve wheat, or any crop, is incredibly difficult because often along with the desired traits, come numerous undesirable traits,” said Singh. “That’s where pre-breeding comes in – we essentially purify this huge pool of good and bad traits by identifying useful genes, like heat tolerance, then make these traits available in a form that’s easier for wheat breeders to access and use.”

Pre-breeding is done through cutting-edge, cost-effective technologies that characterize the genetic information of CIMMYT’s wheat genebank. Using these tools, nearly 40 percent of the 150,000 seed samples of wheat in the bank have undergone high-throughput genetic characterization, a process that allows pre-breeders to rapidly identify desirable traits in the varieties.

A recent successful example of pre-breeding was highlighted in a report that genetically characterized a collection of 8,400 centuries-old Mexican wheat landraces adapted to varied and sometimes extreme conditions, offering a treasure trove of potential genes to combat wheat’s climate-vulnerability.

“Pre-breeding helps us better understand and gather more information on what genetic traits are available in CIMMYT’s wheat genebank, so researchers can have more access to a wider variety of information than ever before,” said Prashant Vikram, wheat researcher who is also working with the pre-breeding team at CIMMYT.

However, as new genomics tools continue to develop, capacity building for researchers is necessary to ensure the potential impacts of the genebank’s biodiversity is fully realized and equitably accessible, said Kevin Pixley, SeeD project leader and program director of CIMMYT’s Genetic Resources Program.

During the IAC partners, scientists, students, and stakeholders from across the globe provided feedback on SeeD and pre-breeding initiatives, while CIMMYT led discussions on how to build genebank biodiversity for future food security and sustainable development. Increasing partnerships and multidisciplinary projects for stronger impact were identified as key needs for future initiatives.

New online learning platform offers capacity development for all

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Trainees work with KDSmart phenotyping technology, one of the subjects taught in the new SeeD distance learning modules. Photo: G. Salinas/CIMMYT
Trainees work with KDSmart phenotyping technology, one of the subjects taught in the new SeeD distance learning modules. Photo: G. Salinas/CIMMYT

EL BATAN, Mexico (CIMMYT) — An online learning platform created in partnership with the Seeds of Discovery (SeeD) initiative will revolutionize the project’s capacity development efforts, allowing SeeD to reach more users than ever before.

Distance learning modules consisting of practical and theory modules about how to enhance the use of genetic diversity in wheat and maize, will allow anyone in the world to benefit from SeeD’s collection of knowledge and tools regardless of location or income. These new distance learning modules are free and will be available online to the public in the future.

SeeD works to unlock and utilize novel genetic diversity held in genebanks to accelerate the development of improved maize and wheat varieties.  The initiative has generated massive amounts of invaluable information on the genetic diversity of maize and wheat, as well as cutting edge software tools to aid in its use and visualization.

“This information and tools have been made publicly available so that breeders and researchers around the world can develop improved crop varieties,” said Gilberto Salinas, head of capacity development at the SeeD initiative. “However, if people don’t know how to effectively utilize these datasets and software, the information is useless,” he said.

SeeD offers workshops on genetic diversity analysis, pre-breeding, and software tools will be offered free of charge several times a year, but space is limited, meaning that only a few researchers can be trained on SeeD’s data and technology each year.

“These modules will ensure that anyone can access and learn to effectively utilize our products, thus enabling the next generation of breeders and agricultural researchers in the tools that they will need to improve food security around the world,” Salinas said.

SeeD and CIMMYT’s first distance-learning module, which is hosted on the Moodle online learning platform, was developed by Laura Bouvet, a Ph.D. candidate in the department of plant science at Britain’s University of Cambridge, working with the National Institute of Agricultural Botany (NIAB). Bouvet, who participated in a three-month internship with SeeD said she is very excited about the number of people the modules will reach.

“So much information has been generated through the Seeds of Discovery project in terms of data and tools, and it’s very important that people can access and utilize this information for the greater good,” she said.  “These modules will complement SeeD workshops and will allow for higher impact of everything that has been generated through SeeD.”

KDSmart, one of the subjects taught in the new SeeD distance learning modules.
KDSmart, one of the subjects taught in the new SeeD distance learning modules.

The first module focuses on theory, introducing genotypic data, its importance for genetic diversity, how it is used, as well as the technologies that are used to generate and analyze the data.

The second module focuses on practice, guiding users through the process of using KDSmart, an Android based application to record phenotypic data, information on the physical traits of maize and wheat varieties. This module is being developed with the participation of several researchers from SeeD and the Genetic Resources Program led by Gilberto Salinas.

The modules also include two videos created by Bouvet in partnership with SeeD and CIMMYT, one to explain the Seeds of Discovery project, and another to introduce the platform to show how the modules can help prospective users solve problems they may face in their research.

The modules are directed at postgraduate students, crop breeders, university faculty members, and researchers. Currently, the modules and videos are available only in Spanish language, but English versions will be developed in the near future to reach even more people interested in genetic diversity.

“These distance learning modules are for everyone who wants to learn about genetic diversity, which is crucial to increase crop yields and is one of several important solutions to tackle climate change,” Bouvet said. “With distance learning modules, SeeD will be able to reach many more people, so that those without the time or financial means to physically come to CIMMYT can still benefit from their workshops and learn to utilize genetic diversity.”

SeeD is a multi-project initiative comprising: MasAgro Biodiversidad, a joint initiative of CIMMYT and the Mexican Ministry of Agriculture (SAGARPA) through the MasAgro (Sustainable Modernization of Traditional Agriculture) project; the CGIAR Research Programs on Maize (MAIZE CRP) and Wheat (WHEAT CRP); and a computation infrastructure and data analysis project supported by the UK’s Biotechnology and Biological Sciences Research Council (BBSRC). Learn more about the Seeds of Discovery project here. 

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Combating spread of MLN in Africa poses unique but surmountable challenges, seed health specialist says

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Anne Wangui, a seed health technician at CIMMYT demonstrate DAS–ELISA method used for detecting MLN-causing viruses. B.Wawa/CIMMYT
Anne Wangui, a seed health technician at CIMMYT demonstrate DAS–ELISA method used for detecting MLN-causing viruses. B.Wawa/CIMMYT

NAIROBI, Kenya (CIMMYT) – The maize lethal necrosis (MLN) disease poses a major concern to researchers, seed companies and farmers in sub-Saharan Africa. The impact of MLN is massive in the affected countries, especially at the household level for smallholder farmers who can experience up to 100 percent yield loss.

Concerted regional efforts through a project funded by the U.S. Agency for International Development (USAID) over the past year have helped in prioritizing and targeting efforts to stop the spread of the disease  from the endemic to the non-endemic countries in sub-Saharan Africa. The project target countries are Ethiopia, Kenya, Rwanda, Tanzania and Uganda (currently MLN endemic), while Malawi, Zambia and Zimbabwe are MLN non-endemic but important commercial maize seed producing countries where the project implemented extensive MLN surveillance efforts.

Determining exactly how the MLN causing viruses, which include maize chlorotic mottle virus (MCMV) and sugarcane mosaic virus, are transmitted in the field through insect-vectors, infected plants and seed lots, has made diagnosis a key element in the efforts to halt the spread of the disease.  If the viruses, in particular MCMV, the major causative agent, are introduced into a new area through contaminated seed and infected plants and not diagnosed and destroyed immediately, MLN can spread rapidly. Insect vectors in the field can play a significant role in transmitting viruses to the neighboring healthy maize fields.

In order to manage MLN at a regional level, partners in the project are developing harmonized diagnostic protocols to test, detect and prevent its spread through available mitigation measures. These were highlighted during the MLN Diagnostics and Management Project Review and Planning Meeting held in October, 2016 in Nairobi.

Monica Mezzalama, head of the CIMMYT Seed Health Laboratory  in  Mexico and a plant pathologist, shared her views on MLN testing and diagnostic methods that can be adopted to test maize plants and seed lots in the following interview.

Q: What is the role of diagnostics in managing MLN in Africa?

A: The role of sensitive, reliable, reproducible, affordable and standardized diagnostic tools is fundamental to the management of MLN in Africa. Only with an appropriate diagnosis tool, we can effectively detect and prevent further dispersal of the disease to the non-endemic areas through seed.

Q: What is the progress for detecting MLN in seed lots?

A: At the moment, detection in seed lots is still a weak link in the MLN management chain, although detection methods are available, such as ELISA and several versions of PCR, which are serological and molecular based, respectively, for the detection of MLN viruses. Extracting the pathogen from seed is more difficult than extracting it from leaf tissue, making it more time consuming to obtain clear and reliable results. Additionally, scientists are on the verge of resolving the significant issue of “sampling intensity,” which refers to the proportion of the seed sampled from the presented seed lots.

Q: What are some of the practices CIMMYT has adopted to ensure MLN-free seed production across regional centers in Africa?

A: Since 2013, CIMMYT has implemented several effective measures to ensure healthy MLN-free seed production and exchange. An aggressive strategy against the disease has been adopted at the main maize breeding station at Kenya Agricultural Livestock and Research Organization in Kiboko, by introducing a maize-free period of two months annually on the station as well as in the surrounding areas in close interaction with the farming communities in the neighboring villages. All this was possible thanks to the great collaboration between KALRO staff, CIMMYT colleagues, and the local farmers. This action taken for two consecutive years reduced drastically the incidence of MLN infected plants. In addition, a very thoughtful sensitization campaign was carried out, explaining how to effectively apply insecticide to control vectors, how to avoid the spread of the pathogen from one field to another by advising workers to change their clothes and shoes after working in an infected field. Also, management of planting dates has been implemented to avoid peaks of vectors populations or physically avoiding the arrival of the insects by planting according to the wind stream direction. In Zimbabwe, CIMMYT has also invested significant resources by establishing an MLN Quarantine Facility at Mazowe, near Harare to enable safe exchange of MLN virus-free breeding materials in southern Africa.

Q: Based on your experience with various diagnostic tools, what options would work for Africa’s seed companies and regulatory agencies to help detect MLN-causing viruses?

A: For detection of MLN viruses in green leaf tissue, I think immunostrips, ELISA and PCR techniques work very well and they can be adopted according to the level of specialization of the operator, infrastructure and financial resources available. As far as detection in dry seed is concerned, I think that at the moment the ELISA technique is the most reliable and affordable. PCR methods are available, but still some improvement needs to be done in the extraction of the viral RNA from the seed matrix.

Q: What factors do the relevant actors need to consider in the process of harmonizing diagnostic protocols across MLN-endemic and non-endemic countries?

A: Harmonization of protocols and procedures are needed not only for MLN, but also for effective design and implementation of phytosanitary aspects related to the exchange of commercial seed and vegetative material across borders. Unfortunately, it is not an easy task because of the number of actors involved, including national plant protection organizations, seed companies, seed traders, farmers, and policy makers. Nevertheless, the most important factors that, in my opinion, should be taken into consideration for consensus on harmonized protocols and where the efforts should focus on are: avoid the spread of the disease from country to country, and from the endemic to non-endemic areas within the same country; implement a well-coordinated and integrated package of practices for effective management of MLN in the endemic countries; reduce as much as possible economic losses due to the restriction on seed exchange; implement serious and effective seed testing and field inspections of the seed multiplication plots to prevent the incidence of MLN and for timely detection and elimination of infected plants.

View Meeting presentations  here

MLN Pathogen Diagnosis, MLN-free Seed Production and Safe Exchange to Non-Endemic Countries Brochure

Visit the MLN website for more information

The CIMMYT-led MLN Diagnostics and Management Project, funded by USAID East Africa Mission is coordinating the above work with objectives to: a) prevent the spread of MLN, especially Maize Chlorotic Mottle Virus (MCMV), from the MLN-endemic countries in eastern Africa to non-endemic countries in sub-Saharan Africa; b) support the commercial seed sector in the MLN-endemic countries in producing MCMV-free commercial seed and promote the use of clean hybrid seed by the farmers; and c) to establish and operate a MLN Phytosanitary Community of Practice in Africa, for sharing of learning, MLN diagnostic and surveillance protocols, and best management practices for MLN control in Africa.

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First drought tolerant and insect resistant “stacked” transgenic maize harvested in Kenya

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A maize stem infested by the African stem borer that is predominant in the highlands. B.Wawa/CIMMYT
A maize stem infested by the African stem borer that is predominant in the highlands. B.Wawa/CIMMYT

NAIROBI, Kenya (CIMMYT) – Life has become more difficult in Kenya for the intrepid stem borer. For the first time, transgenic maize hybrids that combine insect resistance and drought tolerance have been harvested from confined field trials, as part of a public-private partnership to combat the insect, which costs Kenya $90 million dollars in maize crop losses a year.

Conducted at the Kenya Agricultural and Livestock Research Organization (KALRO) centers in Kitale and Kiboko in April and May, the experiments were managed by the Water Efficient Maize for Africa (WEMA) project, a collaboration led by the African Agricultural Technology Foundation (AATF).  The test crop successfully weathered intense, researcher-controlled infestations of two highly-aggressive Kenyan insect pests— the spotted stem borer and African stem borer.

The maize is referred to as “stacked” because it carries more than one inserted gene for resilience; in this case, genes from the common soil microbe Bacillus thuringiensis (Bt) that confers resistance to certain species of stem borer, and another from Bacillus subtilis that enhances drought tolerance.

Bt hybrid maize showed better resistance to the stem borer compared to the conventional commercial maize. F. Maritim/KALRO
Bt hybrid maize showed better resistance to the stem borer compared to the conventional commercial maize. F. Maritim/KALRO

First time maize resists two-pest attack

WEMA partners from KALRO, the International Maize and Wheat Improvement Center (CIMMYT), U.S. seeds company Monsanto and the African Agricultural Technology Foundation (AATF) hope that, given the successful results of this experiment, they will soon be able to test the new maize in national trials.

“This is the first planting season of the stacked materials and, from the initial data, there was a clear difference between the plants containing the stem borer resistance traits and the conventional commercial maize grown for comparison, which showed a lot of damage,” said Murenga Mwimali, WEMA coordinator at KALRO.

The maize in the Kiboko experiment was infested with the spotted stem borer (Chilo partellus, by its scientific name), a pest found mostly in the lowlands. At Kitale, the scientists besieged the crops with the African stem borer (Busseola fusca), the predominant maize pest in the highlands. This was the first time that Bt maize had been tested in the field against Busseola fusca, according to Stephen Mugo, regional representative for CIMMYT in Africa and leader of the center’s WEMA team.

“From our observations, this is the first time that stacked Bt genes provided control for both Chilo partellus and Busseola fusca in maize,” Mugo said, adding that stem borers annually chew their way through 13.5 percent of Kenya’s maize, representing a loss of 0.4 million tons of grain.

“Losses can reach 80 percent in drought years, when maize stands are weakened from a lack of water and insect infestation,” he explained. Although the impact of the stem borer in the field often goes unnoticed because the insects sometimes destroy the plant from the root, the loss is significant for a country that depends on maize for food.

The new maize was developed using lines from Monsanto and CIMMYT-led conventional breeding for drought tolerance.

A Bt hybrid maize with resistance to the African stem borer and tolerant to drought harvested at Kitale research center, Kenya. B.Wawa/CIMMYT
A Bt hybrid maize with resistance to the African stem borer and tolerant to drought harvested at Kitale research center, Kenya. B.Wawa/CIMMYT

Seeking approval for widespread testing and use

Trial harvesting took place under close supervision by inspectors from the Kenya Plant Health Inspectorate Services (KEPHIS) and the National Biosafety Authority (NBA), strictly in line with regulatory requirements for handling genetically modified crops in Kenya.

The NBA has given partial approval to KALRO and AATF for open cultivation of the stacked transgenic hybrid maize. Once full approval is given, the varieties can be grown in non-restricted field conditions like any other variety and the Bt maize can be tested in the official national performance trials organized by KEPHIS to test and certify varieties for eventual use by farmers.

“The data we are generating in this trial will support further applications for transgenic work in Kenya, particularly for open cultivation,” Mwimali said.

Public initiatives key to harnessing genetic diversity for food security, says genetic resources expert

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Maize collections held at the CIMMYT genebank in Mexico. Photo: CIMMYT
Maize collections held at the CIMMYT genebank in Mexico. Photo: CIMMYT

EL BATAN, Mexico (CIMMYT) – Public initiatives to facilitate the use of genetic resources must be promoted to demonstrate the value they add to agriculture for development and food security research, says Kevin Pixley, director of the Genetic Resources Program at the International Maize and Wheat Improvement Center (CIMMYT).

Pixley heads the Seeds of Discovery (SeeD) initiative at CIMMYT through which scientists are working to unlock novel, or new, genetic diversity held in germplasm banks – often popularly known as gene banks – to accelerate the development of maize and wheat varieties that grow better under environmental pressures like erratic weather and water scarcity, as well as provide increased nutritional value. CIMMYT scientists do this by identifying crop varieties that display valuable traits like drought and heat-stress tolerance that allow them to flourish despite these stresses.

Greater accessibility can also increase the breadth of impact due to research results being freely available to all, said Pixley who will speak at the International Agrobiodiversity Congress on Nov. 7, in New Delhi.

“By characterizing the genetic makeup of maize and wheat collections, SeeD has generated ‘fingerprints’ describing the diversity of two of humanity’s major food crops,” Pixley said. “To multiply the impacts of these results, SeeD has created a genetic resources utilization platform for breeders and researchers, made up of publicly available data and software tools.”

Since the project began in 2012, it has detailed the genetic makeup of over 110,000 maize and wheat samples, sharing information with institutions in Africa, Latin America and South Asia to aid in developing disease resistant, drought tolerant germplasm with improved nutritional and quality traits.

Pixley, who will discuss the importance of public initiatives in the conservation and facilitation of genetic resources in, shared some insights on the role of agrobiodiversity in the effort to achieve food security in the following interview.

Q: What do you hope to contribute by your talk?

We’ll present the SeeD initiative as a unique example and model of a public initiative to characterize and facilitate the use of genetic diversity to address agricultural production challenges of today and the future. There is tremendous value in executing such a project in the public domain; for example, 1) the benefits from a one-time investment are shared, thus saving the costs of multiple individual efforts, 2) the knowledge gained is freely available, thus reducing the likelihood that individuals will seek exclusive rights to any discovery, and 3) equitable access to the benefits of genetic diversity is actively promoted by sharing results, tools and methods with individuals and institutions large and small.

Q: What is the importance of protecting genetic resources for global food security and health?

Dozens of instances are known in which crop wild relatives or landraces have provided essential genes for disease or pest resistance, abiotic stress tolerance or quality traits in such crops as wheat, rice, tomato, potato, sunflower and maize.  As world climate is changing and resources available for agriculture – such as arable land and water for irrigation – are declining, crops will be challenged by predictable – such as heat and drought – and unpredictable – such as new diseases and pests – stresses. Our future food security will undoubtedly be enhanced by, and may indeed be dependent on the use of genetic diversity conserved and made available through germplasm banks.

Q: What would you like to see come out of the conference?

I’d like to see the advancement of the conversation about the importance of conservation, sustainable and equitable use of genetic resources. There are diverse views about how humanity should share the responsibilities, costs and benefits of conserving and using genetic resources. This is a complex conversation with scientific, social, cultural, economic, and ethical dimensions. This is a conversation that may determine the very survival of future generations, and it is therefore of vital importance to society.

Conference highlights urgent need to harness genetic resources for future food security

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Climate change is likely to have a huge impact on cereal farmers in India. CIMMYT/Emma Quilligan
Climate change is likely to have a huge impact on cereal farmers in India. CIMMYT/Emma Quilligan

NEW DELHI (CIMMYT) — The International Maize and Wheat Improvement Center (CIMMYT) will participate in the first International Agrobiodiversity Congress (IAC) from November 6 to 9, 2016 in New Delhi. The IAC aims to provide a common platform for stakeholders, including farmers, scientists, policymakers and industry leaders to share their experiences and knowledge in agrobiodiversity management and genetic resource conservation. The Congress is being hosted by the Indian Society of Plant Genetic Resources and Bioversity International, and co-organized by CIMMYT and the Borlaug Institute for South Asia.

“Multiple challenges in future wheat production – including heat stress, changes in rainfall and a growing threat of increased virulent diseases – will increase the demand for new varieties that can cope with stress and changing environment,” said Arun Joshi, CIMMYT’s regional representative in Asia. “This congress will focus on advances that can be made through increased diversity and targeted use of genetic resources to produce improved varieties.”

Martin Kropff, director general of CIMMYT, will give a keynote address on why effective partnerships and agrobiodiversity are needed to feed nine billion people. He will also chair a plenary session on “Agrobiodiversity for Sustainable Development Goals.” Other key themes for plenaries include agrobiodiversity for adaptation to and mitigation of climate change, intellectual property rights, access and benefit sharing, farmers’ rights, quarantine, biosafety and biosecurity and science-led innovation for agrobiodiversity management and sustainable use.

CIMMYT is also organizing a satellite session titled “Harnessing Biodiversity for Food Security and Sustainable Development.” This session will bring together numerous partners of the SeeD initiative, which seeks to unlock the genetic potential of maize and wheat genetic resources by providing breeders with a toolkit to improve targeted use in the development of high-yielding, climate-ready and resource-efficient cultivars. The session will also cover the importance of enhancing the use of genetic resources for improved agriculture, and how doing so can help meet several of the 17 U.N. Sustainable Development Goals by 2030. SeeD is a pioneering partner in the Diversity Seek initiative, which seeks synergies among projects to harness the diversity of crop species to feed humankind.

In addition to Kropff, CIMMYT speakers at the conference include Ravi Singh, distinguished scientist and head of bread wheat improvement and Kevin Pixley, director of CIMMYT’s genetic resources program. Other researchers working to improve the genetic potential of maize and wheat will also participate. CIMMYT will also host an evening reception on Nov. 7 to mark CIMMYT’s achievements over the last 50 years.

Check out the IAC program here and list of keynote speakers here.   

New Publications: How to better breed maize for future climates in Latin America

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A CIMMYT staff member at work in the maize active collection in the Wellhausen-Anderson Plant Genetic Resources Center. CIMMYT/Xochiquetzal Fonseca
A CIMMYT staff member at work in the maize active collection in the Wellhausen-Anderson Plant Genetic Resources Center.
CIMMYT/Xochiquetzal Fonseca

EL BATAN, Mexico (CIMMYT) — A new study from The International Maize and Wheat Improvement Center (CIMMYT) evaluates how elite lines of maize in tropical conditions throughout Latin America perform under abiotic stresses like drought, nitrogen (N) deficiency and combined heat and drought stress.

By 2050, demand for maize is predicted to double in the developing world, and cereal production will need to greatly rise to meet this demand. However, drought and N deficiency are common detrimental factors towards achieving this goal throughout the developing world. The development of new maize germplasm able to tolerate these stresses is crucial if productivity in maize-based farming systems is to be sustained or increased in tropical lowlands in Latin America and elsewhere.

The authors found that only a few lines were tolerant across these conditions, which re-emphasizes the need to separately screen germplasm under each abiotic stress to improve tolerance. Based on high best linear unbiased predicted general combining ability, they found it will be possible to develop hybrids tolerant to multiple abiotic stresses without incurring any yield penalty under non-stressed conditions using these inbred lines. These elite lines can immediately be used in tropical breeding programs in Mexico, Central and South America, and sub-Saharan Africa to improve tolerance to abiotic stress to ensure food security in a changing climate.

Read more about the study “Identification of Tropical Maize Germplasm with Tolerance to Drought, Nitrogen Deficiency, and Combined Heat and Drought Stresses” here and check out other new publications from CIMMYT staff below.

  1. AlphaSim : software for breeding program simulation. 2016. Faux, A.M.; Gorjanc, G.; Gaynor, C.; Battagin, M.; Edwards, S.M.; Wilson, D.L.; Hearne, S.; Gonen, S.; Hickey, J.M. The Plant Genome 9 (3) : 1-14.
  2. Conservation agriculture-based wheat production better copes with extreme climate events than conventional tillage-based systems: a case of untimely excess rainfall in Haryana, India. 2016. Aryal, J.P.; Sapkota, T.B.; Stirling, C.; Jat, M.L.; Jat, H.S.; Munmun Rai; Mittal, S.; Jhabar Mal Sutaliya. Agriculture, Ecosystems and Environment  233 : 325-335.
  3. Grain yield performance and flowering synchrony of CIMMYT’s tropical maize (Zea mays L.) parental inbred lines and single crosses. 2016. Worku, M.; Makumbi, D.; Beyene, Y.; Das, B;. Mugo, S.N.; Pixley, K.V.; Banziger, M.; Owino, F.; Olsen, M.; Asea, G.; Prasanna, B.M. Euphytica 211 (3) : 395-409.
  4. Growing the service economy for sustainable wheat intensification in the Eastern Indo-Gangetic Plains: lessons from custom hiring services for zero-tillage. 2016.  Keil, A.; D’souza, A.; McDonald, A. Food Security 8 (5) : 1011-1028.
  5. Wheat landraces currently grown in Turkey : distribution, diversity, and use. 2016. Morgounov, A.I.; Keser, M.; Kan, M.; Kucukcongar, M.; Ozdemir, F.; Gummadov, N.; Muminjanov, H.; Zuev, E.; Qualset, C. Crop Science 56 (6) : 3112-3124.
  6. First report of sugar beet nematode, Heterodera schachtii Schmidt, 1871 (Nemata: Heteroderidae) in sugar beet growing areas of Sanliurfa, Turkey. 2016. Jiang-Kuan Cui; Erginbas-Orakci, G.; Huan Peng; Wen-Kun Huang; Shiming Liu; Fen Qiao; Elekcioglu, I.H.; Imren, M.; Dababat, A.A.; De-Liang Peng. Turkish Journal of Entomology 40 (3) : 303-314.
  7. Identification of tropical maize germplasm with tolerance to drought, nitrogen deficiency, and combined heat and drought stresses. 2016. Trachsel, S.; Leyva, M.; Lopez, M.; Suarez, E.A.; Mendoza, A.; Gomez, N.; Sierra-Macias, M.; Burgueño, J.; San Vicente, F.M. Crop Science 56 : 1-15.
  8. Performance and sensitivity of the DSSAT crop growth model in simulating maize yield under conservation agriculture. 2016. Corbeels, M.; Chirat, G.; Messad, S.; Thierfelder, C. European Journal of Agronomy 76 : 41-53.
  9. The bacterial community structure and dynamics of carbon and nitrogen when maize (Zea mays L.) and its neutral detergent fibre were added to soil from Zimbabwe with contrasting management practices. 2016. Cruz-Barrón, M. de la.; Cruz-Mendoza, A.; Navarro–Noya, Y.E.; Ruiz-Valdiviezo, V.M.; Ortiz-Gutierrez, D.; Ramirez Villanueva, D.A.; Luna Guido, M.; Thierfelder, C.; Wall, P.C.; Verhulst, N.; Govaerts, B.; Dendooven, L. Microbial Ecology. Online First.
  10. Genetic diversity and molecular characterization of puroindoline genes (Pina-D1 and Pinb-D1) in bread wheat landraces from Andalusia (Southern Spain). 2016. Ayala, M.; Guzman, C.; Peña-Bautista, R.J.; Alvarez, J.B. Journal of Cereal Science 71 : 61-65.