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Theme: Innovations

Working with smallholders to understand their needs and build on their knowledge, CIMMYT brings the right seeds and inputs to local markets, raises awareness of more productive cropping practices, and works to bring local mechanization and irrigation services based on conservation agriculture practices. CIMMYT helps scale up farmers’ own innovations, and embraces remote sensing, mobile phones and other information technology. These interventions are gender-inclusive, to ensure equitable impacts for all.

Development of Smart Innovation through Research in Agriculture (DeSIRA)

The overall objective of the 5-year EU-funded DeSIRA action, led by the International Potato Center (CIP), is to improve climate change adaptation of agricultural and food systems in Malawi through research and uptake of integrated technological innovations.

CIMMYT’s role is focused on the following project outputs:

  • Identify and develop integrated technology options that effectively provide management options to contribute to reducing risks and increasing resilience and productivity of the smallholder farmers’ agrifood systems in Malawi. Towards this objective, CIMMYT will evaluate drought-tolerant and nutritious maize varieties under conservation agriculture and conventional practices, and assess the overall productivity gains from agronomic and germplasm improvements versus current farming practices.
  • Develop, test and promote robust integrated pest and disease management strategies to predict, monitor and control existing and emerging biotic threats to agriculture while minimizing risks to farmers’ health and damage to the environment. Towards this objective, CIMMYT will evaluate the effect of striga on maize performance under conservation agriculture and conventional practices; evaluate farmer methods and other alternatives to chemical sprays for the control of fall armyworm; and study the effect of time of planting for controlling fall armyworm.

Power steering

Protected from the harsh midday sun with a hat, Pramila Mondal pushes behind the roaring engine of a two-wheel tractor. She cultivates a small plot of land with her husband in the small village of Bara Kanaibila, in the Rajbari district of Bangladesh, near the capital Dhaka.

Using this machine, she also provides planting services to farmers who need to sow wheat, maize, mungbean, mustard and jute, earning her between $600 and $960 in each planting season.

Mondal and her husband first heard about this technology five years ago, when they attended an event to promote agricultural mechanization, organized by the International Maize and Wheat Improvement Center (CIMMYT). After seeing a demonstration, they were convinced that the power-tiller-operated seeder could form the basis for a business.

Ultimately, Mondal bought the machine. She got training on how to operate and maintain it, as part of the Cereal Systems Initiative for South Asia – Mechanization Irrigation and Mechanization Extension Activity (CSISA-MI and CSISA-MEA) project, supported by USAID through Feed the Future.

Let’s get it started

Pramila Mondal activates the self-starting mechanism on her power-tiller-operated seeder. (Photo: Shahabuddin Shihab/CIMMYT)
Pramila Mondal activates the self-starting mechanism on her power-tiller-operated seeder. (Photo: Shahabuddin Shihab/CIMMYT)

Mondal became the only woman in her area who could operate a seeder of this type, making her locally famous. After seeing the results of her business, others followed suit.

Eight more women in her area expressed interest in operating power-tiller-operated seeders and also went on to become service providers.

They all faced a similar problem: power tillers are hard to start. Pulling the starting rope or turning the hand crank requires a lot of strength.

The CSISA-MEA project team worked with a local engineering company to introduce a self-starting mechanism for power tiller engines. Since then, starting diesel engines is no longer a problem for women like Mondal.

Glee for the tillerwoman

Almost all of the 11 million hectares of rice planted every year in Bangladesh are transplanted by hand. It is becoming increasingly difficult to find people willing to do this type of backbreaking work. New machines are being introduced that transplant rice mechanically, but they require rice seedling to be raised in seedling mats.

As this new service is required, Mondal jumped at the opportunity. With support from CIMMYT through the CSISA-MEA project, she is now raising seedlings for this new type of rice transplanters.

CIMMYT facilitated training for machinery service providers on mat type seedling production, in partnership with private companies. Mondal and other women who were also trained produced enough seedlings to plant 3.2 hectares of land with a rice transplanter they hired from a local owner.

Mondal and her husband now have big dreams. They intend to buy a rice transplanter and a combine harvester.

“With our effort we can make these changes, but a little support can make big difference, which the CSISA-MEA project did,” she said.

Consider the seed

Seed viability test at the CIMMYT genebank. (Photo: Alfonso Cortés/CIMMYT)
Seed viability test at the CIMMYT genebank. (Photo: Alfonso Cortés/CIMMYT)

The conservation of plant genetic diversity through germplasm conservation is a key component of global climate-change adaptation efforts. Germplasm banks like the maize and wheat collections at the International Maize and Wheat Improvement Center (CIMMYT) may hold the genetic resources needed for the climate-adaptive crops of today and tomorrow.

But how do we ensure that these important backups are themselves healthy and not potential vectors of pest and disease transmission?

This was the question that animated “Germplasm health in preventing transboundary spread of pests and pathogens,” the second webinar in Unleashing the Potential of Plant Health, a CGIAR webinar series in celebration of the UN-designated International Year of Plant Health.

“Germplasm refers to the source plants of either specific cultivars or of unique genes or traits that can be used by breeders for improved cultivars,” program moderator and head of the Health and Quarantine Unit at the International Potato Center (CIP) Jan Kreuze explained to the event’s 622 participants. “If the source plant is not healthy, whatever you multiply or use it for will be unhealthy.”

According to keynote speaker Saafa Kumari, head of the Germplasm Health Unit at the International Center for Agricultural Research in the Dry Areas (ICARDA), we know of 1.3 thousand pests and pathogens that infect crops, causing approximately $530 billion in damages annually. The most damaging among these tend to be those that are introduced into new environments.

Closing the gap, strengthening the safety net

The CGIAR has an enormous leadership role to play in this area. According to Kumari, approximately 85% of international germplasm distribution is from CGIAR programs. Indeed, in the context of important gaps in the international regulation and standards for germplasm health specifically, the practices and standards of CGIAR’s Germplasm Health Units represent an important starting point.

“Germplasm health approaches are not necessarily the same as seed and plant health approaches generally,” said Ravi Khaterpal, executive secretary for the Asia-Pacific Association of Agricultural Research Institutions (APAARI). “Best practices are needed, such as CGIAR’s GreenPass.”

In addition to stronger and more coherent international coordination and regulation, more research is needed to help source countries test genetic material before it is distributed, according to Francois Petter, assistant director for the European and Mediterranean Plant Protection Organization (EPPO). Head of the CGIAR Genebank Platform Charlotte Lusty also pointed out the needed for better monitoring of accessions in storage. “We need efficient, speedy processes to ensure collections remain healthy,” she said.

Of course, any regulatory and technological strategy must remain sensitive to existing and varied social and gender relations. We must account for cultural processes linked to germplasm movement, said Vivian Polar, Gender and Innovation Senior Specialist with the CGIAR Research Program on Roots, Tubers and Bananas (RTB). Germplasm moves through people, she said, adding that on the ground “women and men move material via different mechanisms.”

“The cultural practices associated with seed have to be understood in depth in order to inform policies and address gender- and culture-related barriers” to strengthening germplasm health, Polar said.

The event was co-organized by researchers at CIP and the International Institute of Tropical Agriculture (IITA).

The overall webinar series is hosted by CIMMYT, CIP, the International Food Policy Research Institute (IFPRI), IITA, and the International Rice Research Institute (IRRI). It is sponsored by the CGIAR Research Program on Agriculture for Nutrition (A4NH), the CGIAR Gender Platform and the CGIAR Research Program on Roots, Tubers and Bananas (RTB).

The third of the four webinars on plant health, which will be hosted by CIMMYT, is scheduled for March 10 and will focus on integrated pest and disease management. 

Capacitating farmers and development agents through radio

Representing CIMMYT, Kinde Tesfaye (on the left) took part in the live radio programs. (Photo: CIMMYT)

The continuing increase in the number of farming families has led to a growing emphasis on approaches on how to reach more people at a time. Among others, individual, group and mass-media approaches to agricultural extension and advisory services have been used concurrently.

This year, the global COVID-19 pandemic presented yet another challenge to the agriculture sector due to travel restrictions and limited face-to-face interactions. This has obstructed capacity building for farmers as well as development agents to deliver seasonal and intra-seasonal agroclimate advisories for farmers to support farm decisions.

Realizing the importance of mass media in extension, the International Maize and Wheat Improvement Center (CIMMYT) in collaboration with the Ministry of Agriculture, the Ethiopian Institute of Agricultural Research (EIAR) and Climate Change, Agriculture and Food Security (CCAFS)-EA used live show radio program on Sunday mornings to provide climate advisories on the 2020 Kiremt (main cropping) season to farmers and extension workers on a two-weekly basis between June and November. The live show also allows listeners to call in and ask questions and provide feedback. Besides the climate agro-advisories, COVID-19 alerts and precautionary measures were provided to the radio audience.

Extremely low climate induced risk perception

CIMMYT-CASCAID II project baseline assessment indicates that the rural communities in the project intervention areas have an extremely low climate induced risk perception and are also quite resistant to change. The areas are also highly prone to recurring droughts. Erratic rainfall distribution and dry spells are common. Large areas of barren and uncultivable land, water shortage, poor soil quality, soil erosion due to high run off rate are adversely affecting the farming systems. Research shows that simple adaptation actions such as watershed management, changing planting dates and crop varieties could greatly reduce the climate variability and change impacts. However, communities being poorly linked to scientists and policy makers lack information about climate change adaptation options and government schemes related to the same. There are also challenges of communicating scientific research in simplified ways that are appropriate to local stakeholder needs.

In recent years, the use of improved technologies has been increasing due to the progressive national agricultural development policy and strategy that is in place coupled with advisories provided to help farmers to make timely and appropriate farm level decisions and practices.

Agroclimate advisory – the fourth production factor

The provision of agroclimate advisory is considered as the fourth production factor after labor, land, and capital and critical to the agricultural sector as climate and its associated adverse effects can negatively affect agricultural activities and productivities. Thus, ensuring the accessibility of relevant time sensitive forecast based advisory information to farming communities helps improve productivity and yields higher returns.

The advice will also assist smallholder farmers to manage climate risks through informed decisions such as identifying optimum planting time/sowing windows, planting density at the start of the rainy season, while at the same time managing fertilizer application. Moreover, it also benefits farmer decisions and practices on soil water, weeds, diseases, and pest management throughout the growing season. By monitoring weather and crop growth during the season, the same forecast information can assist in predicting crop yields well in advance of crop maturity and to allow farmers to decide whether to sell the product immediately after harvest or store it until it commands better prices later in the year.

Radio for disseminating agroclimate information

In Ethiopia, the use of ICT for the accumulation and dissemination of agroclimate information and other agricultural updates is still low. Radio transmission covers a large percentage of the country with most of the households own a radio. This makes the use of radio programs one of the most cost-effective channels for conveying weather forecast information and agricultural knowledge to rural communities which ultimately facilitate informed decision-making and adoption of new technologies and practices.

In collaboration with its partners, the CIMMYT-CASCADE II project through Fana FM radio implemented a six-month (June-November 2020) live radio program providing seasonal advisories at the start of the main season in June using seasonal forecast from the National Meteorology Agency which was downscaled to Woreda/Kebele level by EIAR, CCAFS-EA and CIMMYT. This was followed by a biweekly or monthly Wereda specific agro-climate advisories which focus on fertilizer application, weeding, crop protection, soil and water management and climate extremes such as flood and droughts.

The program also included experts from the Ministry of Agriculture, EIAR, and CGIAR Centers to provide professional explanations and updates from the perspective of in situational readiness to support issues coming from the radio audience. The program created an opportunity for the federal government to prepare in time on some activities like importing agricultural inputs such as pesticides and fungicides to control the outbreak of pests and diseases (e.g., desert locust infestation and wheat rust outbreak). The platform also provided an opportunity to reach to millions of farmers to convey COVID-19 prevention messages such as physical distancing, use of masks, handwashing and other precautions that need to be taken while working in groups.

Crop nutrient management using digital tool improves yield, reduces greenhouse gas emissions: Study

The use of field-specific fertiliser in the Indo-Gangetic Plains (IGP) can increase grain yield, reduce greenhouse gas emissions compared to traditional farmer fertilization practices (FFP), and lead to reduced costs and increased incomes for farmers.

These were the findings of a study conducted between 2013 and 2017 by the International Maize and Wheat Improvement Centre (CIMMYT) and published in Nature Scientific Report in January 2021.

Read more: https://www.downtoearth.org.in/news/agriculture/crop-nutrient-management-using-digital-tool-improves-yield-reduces-greenhouse-gas-emissions-study-75793

Researchers identify optimal strategy to maximize genomic estimated breeding values

Alinda Sarah shows a maize cob due for harvest on the farm she owns with her husband in Masindi, mid-western Uganda. (Photo: Joshua Masinde/CIMMYT)
Alinda Sarah shows a maize cob due for harvest on the farm she owns with her husband in Masindi, mid-western Uganda. (Photo: Joshua Masinde/CIMMYT)

The ultimate challenge for crop breeders is to increase genetic gain of a crop: literally, to increase the crop’s yield on farmers’ fields. Wheat and maize breeders from the International Maize and Wheat Improvement Center (CIMMYT) and partner institutions are working to achieve this in record time, developing new varieties tailored for farmers’ needs that are also pest- and disease-resistant, climate-resilient, and nutritious.

This work is part of the Accelerating Genetic Gain in Maize and Wheat for Improved Livelihoods (AGG) project. Among other methods, breeders are using state-of-the-art novel tools such as genomic selection to achieve this ambitious goal.

In genomic selection, breeders use information about a plant’s genetic makeup along with data on its visible and measurable traits, known as phenotypic data, to “train” a model to predict how a cross will turn out — information known as “genomic estimated breeding values (GEBV)” — without having to plant seeds, wait for them to grow, and physically measure their traits. In this way, they save time and costs by reducing the number of selection cycles.

However, research is still ongoing about the best way to use genomic selection that results in the most accurate predictions and ultimately reduces selection cycle time. A recent publication by CIMMYT scientist Sikiru Atanda and colleagues has identified an optimal genomic selection strategy that maximizes the efficiency of this novel technology. Although this research studied CIMMYT’s maize breeding programs, AGG scientists working on wheat genetic gain and zinc nutritional content see cross-crop impacts.

Shortening a lengthy process

In the typical breeding stages, breeders evaluate parental lines to create new crosses, and advance these lines through preliminary and elite yield trials. In the process, thousands of lines are sown, grown and analyzed, requiring considerable resources. In the traditional CIMMYT maize breeding scheme, for example, breeders conduct five stages of testing to identify parental lines for the next breeding cycle and develop high yielding hybrids that meet farmers’ needs.

In the current scheme using genomic selection, breeders phenotype 50% of a bi-parental population to predict the GEBVs of the remaining un-tested 50%. Though this reduces the cost of phenotyping, Atanda and his co-authors suggest it is not optimal because the breeder has to wait three to four months for the plant to grow before collecting the phenotypic data needed to calibrate the predictive model for the un-tested 50%.

Atanda and his colleagues’ findings specify how to calibrate a model based on existing historical phenotypic and genotypic data. They also offer a method for creating “experimental” sets to generate phenotypic information when the models don’t work due to low genetic connectedness between the new population and historical data.

This presents a way forward for breeders to accelerate the early yield testing stage based on genomic information, reduce the breeding cycle time and budget, and ultimately increase genetic gain.

Regional maize breeding coordinator for Africa Yoseph Beyene explained the leap forward this approach represents for CIMMYT’s maize breeding in Africa.

“For the last 5 years, CIMMYT’s African maize breeding program has applied genomic selection using the ‘test-half-and-predict-half’ strategy,” he said.  “This has already reduced operational costs by 32% compared to the traditional phenotypic selection.”

“The prediction approach shown in this paper — using historical data alone to predict untested lines that go directly to stage-two trials — could reduce the breeding cycle by a year and save the cost of testcross formation and multi-location evaluation of stage-one testing. This research contributes to our efforts in the AGG project to mainstream genomic selection in all the product profiles.”

Effective for maize and wheat

Atanda, who now works on the use of novel breeding methods to enhance grain zinc content in CIMMYT’s wheat breeding program, believes these findings apply to wheat breeding as well.

“The implications of the research in maize are the same in wheat: accelerating early testing stage and reducing the breeding budget, which ultimately results in increasing genetic gain,” he said.

CIMMYT Global Wheat Program director Alison Bentley is optimistic about the crossover potential. “It is fantastic to welcome Atanda to the global wheat program, bringing skills in the use of quantitative genetic approaches,” she said. “The use of new breeding methods such as genomic selection is part of a portfolio of approaches we are using to accelerate breeding.”

CIMMYT’s wheat breeding relies heavily on a time-tested and validated method using managed environments to test lines for a range of growing environments — from drought to full irrigation, heat tolerance and more — in CIMMYT’s wheat experimental station in Ciudad Obregón, in Mexico’s state of Sonora.

According to CIMMYT senior scientist and wheat breeder Velu Govindan, using the approaches tested by Sikiru can make this even more efficient. As a specialist in biofortification — using traditional breeding techniques to develop crops with high levels of micronutrients — Govindan is taking the lead mainstreaming high zinc into all CIMMYT improved wheat varieties.

“This process could help us identify best lines to share with partners one year earlier — and it can be done for zinc content as easily as for grain yield.”

If this study seems like an excellent fit for the AGG project’s joint focus on accelerating genetic gain for both maize and wheat, that is no accident.

“The goal of the AGG project was the focus of my research,” Atanda said.  “My study has shown that this goal is doable and achievable.”

Read the study:
Maximizing efficiency of genomic selection in CIMMYT’s tropical maize breeding program

Bill Gates highlights CIMMYT’s innovation in latest climate book

Global thought leader, philanthropist and one of the International Maize and Wheat Improvement Center (CIMMYT) and CGIAR’s most vocal and generous supporters, Bill Gates, wrote a book about climate change and is now taking it around the world on a virtual book tour to share a message of urgency and hope.

With How to Avoid a Climate Disaster, Gates sets out a holistic and well-researched plan for how the world can get to zero greenhouse gas emissions in time to avoid a climate catastrophe. Part of this plan is to green everything from how we make things, move around, keep cool and stay warm, while also considering how we grow things and what can be done to innovate agriculture to lower its environmental impact.

Interviewed by actor and producer Rashida Jones, Gates explained his passion for action against climate change: “Avoiding a climate disaster will be one of the greatest challenges us humans have taken on. Greater than landing on the moon, greater than eradicating smallpox, even greater than putting a computer on every desk.”

“The world needs many breakthroughs. We need to get from 51 billion tons [of greenhouse gases] to zero while still meeting the planet’s basic needs. That means we need to transform the way we do almost everything.”

Bill Gates (left) talks to Rashida Jones during one of the events to present his new book.
Bill Gates (left) talks to Rashida Jones during one of the events to present his new book.

Innovations in agriculture

When a book tour event attendee asked about the role of agriculture research in improving farmers’ livelihoods, Gates linked today’s challenge to that of the Green Revolution more than half a century ago. “There’s nothing more impactful to reduce the impacts of climate change than working on help for farmers. What we can do this time is even bigger than that. […] The most unfunded thing in this whole area is the seed research that has so much potential,” he said.

One such innovation and one of Gates’ favorite examples of CGIAR’s work is featured in Chapter 9 of his climate book – “Adapting to a warmer world” – and has been the source of generous funding from the Bill & Melinda Gates Foundation: drought-tolerant maize. “[…] as weather patterns have become more erratic, farmers are at greater risk of having smaller maize harvests, and sometimes no harvest at all. So, experts at CGIAR developed dozens of new maize varieties that could withstand drought conditions, each adapted to grow in specific regions of Africa. At first, many smallholder farmers were afraid to try new crop varieties. Understandably so. If you’re eking out a living, you won’t be eager to take a risk on seeds you’ve never planted before, because if they die, you have nothing to fall back on. But as experts worked with local farmers and seed dealers to explain the benefits of these new varieties, more and more people adopted them,” writes Gates.

We at CIMMYT are very proud and humbled by this mention as in collaboration with countless partners, CIMMYT and the International Institute of Tropical Agriculture (IITA) developed and promoted these varieties across 13 countries in sub-Saharan Africa and contributed to lifting millions of people above the poverty line across the continent.

For example, in Zimbabwe, farmers who used drought-tolerant maize varieties in dry years were able to harvest up to 600 kilograms more maize per hectare — enough for nine months for an average family of six — than farmers who sowed conventional varieties.

The world as we know it is over and, finally, humanity’s fight against climate change is becoming more and more mainstream. CIMMYT and its scientists, staff, partners and farmers across the globe are working hard to contribute to a transformation that responds to the climate challenge. We have a unique opportunity to make a difference. It is in this context that CGIAR has launched an ambitious new 10-year strategy that echoes Gates’s hopes for a better environment and food security for the generations to come. Let’s make sure that it ticks the boxes of smallholder farmers’ checklists.

Out with the old, in with the new

A shop attendant displays drought-tolerant maize seed at the Dryland Seed Company shop in Machakos, Kenya. (Photo: Florence Sipalla/CIMMYT)
A shop attendant displays drought-tolerant maize seed at the Dryland Seed Company shop in Machakos, Kenya. (Photo: Florence Sipalla/CIMMYT)

For several decades, the International Maize and Wheat Improvement Center (CIMMYT) has worked with partners and farmers to improve maize and wheat varieties. Packed with “upgrades” such as tolerance to environmental stresses, tolerance to diseases and pests, boosted nutrient content, higher yield potential and storage capabilities, and improved efficiency in using water and fertilizers, these seeds are rolled out by CIMMYT and its partners to create new opportunities for easier and better lives for farmers.

Together with national research partners, farmers, local governments and seed companies, CIMMYT’s work in seed systems has reaped results. Its experts are eager to put this experience into further action as CGIAR embarks on the next ten years of its journey to transform food, land, and water systems in a climate crisis. And rightly so: investments in CGIAR research — mainly through their contributions to enhancing yields of staple food crops — have returned ten-fold benefits and payoffs for poor people in terms of greater food abundance, lower prices of food, reduced food insecurity and poverty and reduced geographical footprint of agriculture. A large part of this impact is the result of CIMMYT’s day to day efforts to create a better world.

A Bangladeshi woman cuts up feed for her family's livestock. They did not previously have animals, but were able to buy them after her husband, Gopal Mohanta, attended a farmer training from CIMMYT and its partners, which gave him access to better seed, technologies, and practices. Mohanta planted a wider range of crops, and in 2005 he planted maize for the first time, using improved seed based on CIMMYT materials. (Photo: S. Mojumder/Drik/CIMMYT)
A Bangladeshi woman cuts up feed for her family’s livestock. They did not previously have animals, but were able to buy them after her husband, Gopal Mohanta, attended a farmer training from CIMMYT and its partners, which gave him access to better seed, technologies, and practices. Mohanta planted a wider range of crops, and in 2005 he planted maize for the first time, using improved seed based on CIMMYT materials. (Photo: S. Mojumder/Drik/CIMMYT)

Replacing old varieties, not as easy as it sounds

Slow variety turnover — that of more than ten years — makes farmers vulnerable to risks such as climate change and emerging biotic threats. On the other hand, planting improved varieties that match farmers’ needs and the geography they work in, can increase productivity gains and improve the nutritional status of smallholders and their families. This, in turn, contributes to increased household incomes. Indirectly, the benefits can reach the surrounding community by providing increased employment opportunities, wage increases and affordable access to food.

Despite its tremendous benefits, varietal turnover is no small feat.

When it comes to seeds, detailed multi-disciplinary research is behind every new variety and its deployment to farmers. Just as the production of a new snack, beverage or a car requires an in-depth study of what the customer wants, seed systems also must be demand-driven.

Socioeconomists have to work hand-in-hand with breeders and seed system specialists to understand the drivers and bottlenecks for improved varietal adoption, market needs, and gender and social inclusion in seed delivery. Bottlenecks include the lack of access by farmers — especially for resource-poor, socially-excluded ones — to reliable information about the advantages of new varieties. Even if farmers are aware of new varieties, seeds might not be available for sale where they live or they might be too expensive.

Possibly the most complex reason for slow variety turnover is risk vulnerability: some farmers simply can’t afford to take the risk of investing in something that might be good but could also disappoint. At the same time, seed companies also perceive a certain risk: they might not be interested in taking on an improved variety that trumps the seeds from older but more popular varieties they have on stock. For them, building and marketing a new brand of seeds requires significant investments.

Agricultural seed on sale by a vendor near Islamabad, Pakistan. For improved crop varieties to reach farmers, they usually must first reach local vendors like these, who form an essential link in the chain between researchers, seed producers and farmers. (Photo: M. DeFreese/CIMMYT)
Agricultural seed on sale by a vendor near Islamabad, Pakistan. For improved crop varieties to reach farmers, they usually must first reach local vendors like these, who form an essential link in the chain between researchers, seed producers and farmers. (Photo: M. DeFreese/CIMMYT)

New approaches are yielding results

Despite the complexity of the challenge, CIMMYT has been making progress, especially in Africa where slow variety turnover is creating roadblocks for increased food security and poverty alleviation.

Recent analysis of the weighted average age of CIMMYT-related improved maize varieties in 8 countries across eastern and southern Africa reveals that the overall weighted average age has decreased from 14.6 years in 2013 to 10.2 years in 2020. The remarkable progress in accelerating the rate of variety turnover and deploying the improved genetics — with climate resilience, nutritional-enhancement and grain yield — are benefiting more than eight million smallholders in Africa.

In Ethiopia, CIMMYT, EIAR and ICARDA’s work led to the adoption of improved rust-resistant varieties, corresponding productivity gains and economic benefits that, besides the urgent need to fight against the damaging rust epidemic, depended on a combination of enabling factors: pre-release seed multiplication, pro-active policies and rust awareness campaigns. The estimated income gain that farmers enjoyed due to adopting post-2010 varieties in 2016/2017 reached $48 million. For the country itself, the adoption of these varieties could save $65 million that otherwise would be spent on wheat imports.

Bill Gates echoes this in Chapter 9 of his new climate book, How to Avoid a Climate Disaster, as he describes CIMMYT and IITA’s drought-tolerant maize work: “[…] experts at CGIAR developed dozens of new maize varieties that could withstand drought conditions, each adapted to grow in specific regions of Africa. At first, many smallholder farmers were afraid to try new crop varieties. Understandably so. If you’re eking out a living, you won’t be eager to take a risk on seeds you’ve never planted before, because if they die, you have nothing to fall back on. But as experts worked with local farmers and seed dealers to explain the benefits of these new varieties, more and more people adopted them.”

Bidasem director general María Ester Rivas (center) stands for a photo with her seed processing team. Bidasem is a small seed company based in the city of Celaya in the central Mexican plains region known as the Bajío. Despite their small size, Bidasem and similar companies play an important role in reaching small farmers with improved seed that offers them better livelihoods. (Photo: X. Fonseca/CIMMYT)
Bidasem director general María Ester Rivas (center) stands for a photo with her seed processing team. Bidasem is a small seed company based in the city of Celaya in the central Mexican plains region known as the Bajío. Despite their small size, Bidasem and similar companies play an important role in reaching small farmers with improved seed that offers them better livelihoods. (Photo: X. Fonseca/CIMMYT)

Holistic action needed if we are to reach farmers with genetic innovations

Now more than ever, with increased frequency and intensification of erratic weather events on top of the complications of the COVID-19 pandemic, successful seed systems require the right investments, partnerships, efforts across disciplines, and enabling policies.

Varietal release and dissemination systems rely greatly on appropriate government policies and adoption of progressive seed laws and regulations. CGIAR’s commitment to farmers and the success of national seed systems is described in the recently launched 10-year strategy: “CGIAR will support effective seed systems by helping national governments and private sector companies and regulators build their capacities to play their roles successfully. New initiatives will be jointly designed along the seed distribution chain, including for regional seed registration, import and export procedures, efficient in-country trialing, registration and release of new varieties, and seed quality promotion through fit-for-purpose certification.”

In line with CGIAR’s ambitious goals, to provide farmers with a better service, small- and medium-size seed companies need to also be strengthened to become more market-oriented and dynamic. According to SPIA, helping local private seed dealers learn about new technology increases farm-level adoption by over 50% compared to the more commonly used approach, where public sector agricultural extension agents provide information about new seed to selected contact farmers.

CIMMYT socioeconomics and market experts are putting this in practice through working with agrodealers to develop retail strategies, such as targeted marketing materials, provision of in-store seed decision support and price incentives, to help both female and male farmers get the inputs that work best.

Within the new CGIAR, CIMMYT scientists will continue to work with partners to strongly improve the performance of wheat and maize in smallholder farmers’ fields. Concerted efforts from all actors conforming the entire seed system are essential to achieve our vision: to transform food systems for affordable, sufficient and healthy diets produced within planetary boundaries. Wheat and maize seed systems will form the basis to fulfill that vision and provide a tried and tested roadmap for other crops, including legumes, vegetables and fruits. Together, we can keep a finger on the pulse of farmers’ needs and build healthy diets for a better tomorrow from the ground up.

New publications: Doubled haploids in maize — development, deployment and challenges

Haploids  which are produced naturally in maize  were first identified in the crop about a century ago. Today they are used widely in different breeding programs, particularly in the development of doubled haploids, which are highly uniform, genetically pure and stable. Doubled-haploid technology has simplified logistics to make the maize breeding process more efficient and intuitive, facilitated studies at the molecular and genomic level, and increased genetic gains in different breeding programs.  

In a recent review article, scientists from the International Maize and Wheat Improvement Center (CIMMYT) examine strategies for haploid induction and identification, chromosome doubling and production of doubled haploid seed through self-fertilization. They also discuss the potential applications and key challenges linked with doubled haploid technology in maize, and suggest future research directions for people involved in fast-track maize breeding, the seed industry, and academia.  

Extensive studies of haploids and doubled haploids have increased our understanding of the genetic basis and mechanisms involved in haploid induction, the factors that affect haploid induction, different markers to identify putative haploids, and different chemicals agents that can be used for chromosome doubling.  

The technology is useful because the resulting plants are free from different social issues and legal regulations associated with transgenic crops. It maximizes genetic gains in breeding programs, is one of the fastest tools available for developing large numbers of inbred lines quickly and reduces the cost of breeding programs. 

“Deployment of doubled haploid technology is much needed for commercial hybrid maize breeding programs to make them more efficient and economical,” says article co-author Abdurahman Beshir, a maize seed systems specialist based in Nepal. “The technology is also useful to have accelerated varietal turnover and a higher maize seed replacement rate in different market segments.”  

Many multinational seed companies have adopted doubled haploid technology for the wide-scale production of inbred lines. The development of novel techniques for haploid induction and the subsequent production of doubled haploid plants holds significant potential for the management of genetic resources, germplasm enhancement and the development of novel plant populations. Researchers at CIMMYT have also made significant efforts to help national breeding programs adopt this technology, especially in South Asia, where the organisation has shared haploid inducers with numerous partners in Pakistan 

But, while this technology can accelerate maize breeding, it still faces challenges at each step of doubled haploid line development and the authors argue there is a need to extensively explore the genetic potential of this technology to continue increasing the genetic gains associated with different breeding programs.  

Read the full article: Doubled haploids in maize: Development, deployment, and challenges

Cover image: A mixture of doubled haploid maize kernels seen in close-up at CIMMYT’s Agua Fria experimental station in Mexico. (PhotoAlfonso Cortés/CIMMYT)

Read more new publications from CIMMYT researchers: 

  1. Choudhary, M., Meena, V. S., Panday, S. C., Mondal, T., Yadav, R. P., Mishra, P. K., Bisht, J. K., & Pattanayak, A. (2021). Long-term effects of organic manure and inorganic fertilization on biological soil quality indicators of soybean-wheat rotation in the Indian mid-HimalayaAppl. Soil Ecol.157. 
  2. Costa-Neto, G., Fritsche-Neto, R., & Crossa, J. (2021). Nonlinear kernels, dominance, and envirotyping data increase the accuracy of genome-based prediction in multi-environment trialsHeredity126(1), 92-106.  
  3. Jat, H. S., Datta, A., Choudhary, M., Sharma, P. C., & Jat, M. L. (2021). Conservation Agriculture: Factors and drivers of adoption and scalable innovative practices in Indo-Gangetic plains of India – a reviewInternational Journal of Agricultural Sustainability19(1), 40-55.  
  4. Jena, P. R., De Groote, H., Nayak, B. P., & Hittmeyer, A. (2021). Evolution of Fertiliser Use and its Impact on Maize Productivity in Kenya: Evidence from Multiple SurveysFood Sec.13(1), 95-111.  
  5. Krishna, V. V., & Kubitza, C. (2021). Impact of oil palm expansion on the provision of private and community goods in rural IndonesiaEcol. Econ.179, 106829.  
  6. Novotny, I. P., Fuentes-Ponce, M. H., Tittonell, P., Lopez-Ridaura, S., & Rossing, W. A. H. (2021). Back to the people: The role of community-based responses in shaping landscape trajectories in Oaxaca, MexicoLand Use Policy100, 104912.  
  7. Romero-Salas, E. A., Navarro-Noya, Y. E., Luna-Guido, M., Verhulst, N., Crossa, J., Govaerts, B., & Dendooven, L. (2021). Changes in the bacterial community structure in soil under conventional and conservation practices throughout a complete maize (Zea mays L.) crop cycleAppl. Soil Ecol.157, 103733.  
  8. Simtowe, F., & De Groote, H. (2021). Seasonal participation in maize markets in Zambia: Do agricultural input subsidies and gender matter? Food Sec.13(1), 141-155.  
  9. Simtowe, F., Makumbi, D., Worku, M., Mawia, H., & Rahut, D. B. (2021). Scalability of Adaptation strategies to drought stress: The case of drought tolerant maize varieties in KenyaInternational Journal of Agricultural Sustainability19(1), 91-105.  
  10. Sserumaga, J. P., Makumbi, D., Oikeh, S. O., Otim, M., Machida, L., Anani, B. Y., Nhamucho, E., Beyene, Y., & Mugo, S. (2021). Evaluation of early-generation tropical maize testcrosses for grain-yield potential and weevil (Sitophilus zeamais Motschulsky) resistanceCrop Protection139, 105384.  

Groundwater depletion in India could reduce winter cropped acreage significantly in years ahead

Water pumped from a deep irrigation well, called a tube well, at a wheat farm in west India's Gujarat state. (Photo: Meha Jain)
Water pumped from a deep irrigation well, called a tube well, at a wheat farm in west India’s Gujarat state. (Photo: Meha Jain)

India is the world’s second-largest producer of wheat and rice and is home to more than 600 million farmers. The country has achieved impressive food-production gains since the 1960s, due in part to an increased reliance on irrigation wells, which allowed Indian farmers to expand production into the mostly dry winter and summer seasons.

But those gains have come at a cost: The country that produces 10% of the world’s crops is now the world’s largest consumer of groundwater, and aquifers are rapidly becoming depleted across much of India. Indian government officials have suggested that switching from groundwater-depleting wells to irrigation canals, which divert surface water from lakes and rivers, is one way to overcome projected shortfalls.

In a study published in the journal Science Advances, scientists conclude that a switch to canal irrigation will not fully compensate for the expected loss of groundwater in Indian agriculture.

The authors estimate that if Indian farmers lose all access to groundwater in overexploited regions, and if that irrigation water is not replaced with water from other sources, then winter cropped acreage could be reduced by up to 20% nationwide. However, that scenario seems highly unlikely and was included in the study only as an upper-bound estimate.

It seems more likely that any future groundwater shortfalls would be at least partially offset by increases in canal irrigation. But even if all Indian regions currently using depleted groundwater switch to canal irrigation, winter cropped acreage could still decline by 7% nationwide and by 24% in the most severely affected locations, according to the researchers.

Water alternatives needed

“Our results highlight the critical importance of groundwater for Indian agriculture and rural livelihoods, and we were able to show that simply providing canal irrigation as a substitute irrigation source will likely not be enough to maintain current production levels in the face of groundwater depletion,” said study lead author Meha Jain, an assistant professor at the University of Michigan’s School for Environment and Sustainability.

“We need coordinated efforts to solve this water availability and food security issue, which should be supported by science-led policy decisions on what strategies and technology solutions to scale out to improve irrigation efficiency,” said co-author Balwinder Singh, a Cropping Systems Simulation Modeler at the International Maize and Wheat Improvement Center (CIMMYT).

The study analyzed high-resolution satellite imagery and village-level census data and focused on winter cropped acreage. While nearly all Indian farmers plant crops during the monsoon to take advantage of seasonal rains, winter agriculture is mainly reliant on groundwater irrigation and now accounts for 44% of the country’s annual cropped acreage for food grains.

“These findings suggest that other adaptation strategies, in addition to canal expansion, are needed to cope with ongoing groundwater losses,” Jain said.

The possibilities include switching from winter rice to less water-intensive cereals, increased adoption of sprinklers and drip irrigation to conserve water in the fields, and policies to increase the efficiency of irrigation canals.

While groundwater depletion is becoming a global threat to food security, and the extent of current and projected groundwater depletion are well documented, the potential impacts on food production remain poorly quantified. The study is the first to use high-resolution empirical data, including census data about the irrigation methods used in more than 500,000 Indian villages, to estimate the crop production losses that may occur when overexploited groundwater is lost.

“Understanding the complex relationship between food security and water availability is crucial as we prepare for future rainfall variability due to global climate change,” said co-author Gillian Galford of the University of Vermont.

The proliferation of deep (>30 meters) irrigation wells called tube wells since the 1960s has enabled Indian farmers to increase the number of seasons when crops are planted in a given year. This increase in “cropping intensity” is credited for much of the country’s food-production gains.

Maps showing state-by-state Indian winter cropped area loss estimates due to groundwater depletion in coming decades, with and without replacement by canals. Darker shades of pink and red indicate greater projected losses. The map on the left (A) shows projected winter cropped acreage losses if all critically depleted groundwater is lost, with no replacement. The map on the right (B) shows projected winter cropped acreage losses if groundwater irrigation is replaced with canals, using national-level regression coefficients. (Graph: Jain et al. in Science Advances 2021)
Maps showing state-by-state Indian winter cropped area loss estimates due to groundwater depletion in coming decades, with and without replacement by canals. Darker shades of pink and red indicate greater projected losses. The map on the left (A) shows projected winter cropped acreage losses if all critically depleted groundwater is lost, with no replacement. The map on the right (B) shows projected winter cropped acreage losses if groundwater irrigation is replaced with canals, using national-level regression coefficients. (Graph: Jain et al. in Science Advances 2021)

Big data for food security

The researchers used satellite data to measure Indian winter cropped area, a key determinant of cropping intensity. They then linked the satellite data to census information about the three main types of irrigation infrastructure in India: shallow “dug wells,” deeper tube wells and canals that divert surface water.

Linking the two datasets allowed them to determine the relative efficacy of each irrigation method. That, in turn, enabled them to estimate potential future acreage losses and the ability of canal expansion to fill the gap.

The study’s worst-case scenario found that winter cropped area could decrease by up to 20% nationwide and by 68% in the most severely affected regions, if farmers lose all access to groundwater and if that irrigation water is not replaced from another source. The expected losses would largely occur in northwest and central India, according to the study.

The researchers also found that increased distance from existing irrigation canals is strongly associated with decreased acreage planted with winter crops. In the future, a greater reliance on canals could increase inequities related to irrigation access, according to the authors.

“This suggests that while canals may be a viable form of irrigation for those who live near canals, they may lead to more unequal access to irrigation across villages compared to wells, with negative impacts for those who live farther from canals,” the authors wrote.

In addition, the lakes and rivers that feed irrigation canals rise and fall in response to rainfall variability, unlike deep groundwater wells. So, a greater reliance on canal irrigation in the future would result in increased sensitivity to year-to-year precipitation fluctuations, as well as any long-term trends due to human-caused climate change.

The authors of the Science Advances study, in addition to Jain and Galford, are Ram Fishman of Tel Aviv University; Pinki Mondal of the University of Delaware; Nishan Bhattarai of the U-M School for Environment and Sustainability; Shahid Naeem, Upmanu Lall and Ruth DeFries of Columbia University; and Balwinder Singh of the International Maize and Wheat Improvement Center (CIMMYT).

The work was funded by a NASA New Investigator Award to Jain and two NASA Land Cover and Land Use Change grants, one awarded to R.S. DeFries and one to Jain.

——

RELATED RESEARCH PUBLICATIONS:

Groundwater depletion will reduce cropping intensity in India

INTERVIEW OPPORTUNITIES:

Balwinder Singh – Cropping Systems Simulation Modeler, CIMMYT

Meha Jain – Assistant Professor, University of Michigan

FOR MORE INFORMATION, OR TO ARRANGE INTERVIEWS, CONTACT THE MEDIA TEAM:

Rodrigo Ordóñez – Communications Manager, CIMMYT. r.ordonez@cgiar.org

Jim Erickson – Lead Public Relations Representative, University of Michigan. ericksn@umich.edu

Drought-tolerant maize project pioneers a winning strategy for a world facing climate change

Nancy Wawira stands among ripening maize cobs of high yielding, drought-tolerant maize varieties on a demonstration farm in Embu County, Kenya. Involving young people like Wawira helps to accelerate the adoption of improved stress-tolerant maize varieties. (Photo: Joshua Masinde/CIMMYT)
Nancy Wawira stands among ripening maize cobs of high yielding, drought-tolerant maize varieties on a demonstration farm in Embu County, Kenya. Involving young people like Wawira helps to accelerate the adoption of improved stress-tolerant maize varieties. (Photo: Joshua Masinde/CIMMYT)

Since the 1980s, the International Maize and Wheat Improvement Center (CIMMYT) and the International Institute of Tropical Agriculture (IITA) have spearheaded the development and deployment of climate-smart maize in Africa.

This game-changing work has generated massive impacts for smallholder farmers, maize consumers, and seed markets in the region. It also offers a blueprint for CGIAR’s new 2030 Research and Innovation Strategy, which proposes a systems transformation approach for food, land and water systems that puts climate change at the center of its mission.

Over the course of the 10-year run of the first iteration of this collaborative work on climate-adaptive maize, the Drought Tolerant Maize for Africa (DTMA) project, CIMMYT and IITA partnered with dozens of national, regional, and private sector partners throughout sub-Saharan Africa to release around 160 affordable maize varieties. This month, CGIAR recognizes climate-smart maize as one of the standout 50 innovations to have emerged from the institution’s first half-century of work.

Game changer

Maize’s importance as a food crop in sub-Saharan Africa is hard to overstate. So are the climate change-driven challenges it faces.

It accounts for almost one third of the region’s caloric intake. It is grown on over 38 million hectares, primarily under rainfed conditions. Around 40% of this area faces occasional drought stress. Another 25% suffers frequent drought and crop losses reaching 50%.

Drought-tolerant maize stabilized production under drought-stress conditions. Recent studies show that farmers growing drought-tolerant maize varieties in dry years produced over a half ton more maize per hectare than those growing conventional varieties — enough maize to support a family of six for nine months.

Such drastic results fed increased demand for improved, climate-adaptive maize seed in sub-Saharan Africa, thus strengthening local commercial seed markets and helping drought-tolerant maize varieties reach an increasing share of climate-vulnerable farmers.

Today, approximately 8.6 million farmers have benefitted from CIMMYT- and IITA-derived climate-adaptive maize varieties in sub-Saharan Africa. Millions have risen above the poverty line.

In addition to drought-tolerance, CIMMYT- and IITA-derived climate-adaptive maize varieties have been developed to tolerate multiple climate-driven stresses and to provide improved nutritional outcomes through biofortification with essential nutrients such as provitamin A and zinc.

The task ahead

In his recently published book, How to Avoid a Climate Catastrophe, Bill Gates says “no other organization has done more than CGIAR to ensure that families — especially the poorest — have nutritious food to eat. And no other organization is in a better position to create the innovations that will help poor farmers adapt to climate change in the years ahead.”

CGIAR’s new strategic orientation is an important step towards making good on that potential. CIMMYT and IITA’s longstanding work on climate-smart maize offers an important blueprint for the kinds of bold, comprehensive, and collaborative research for development initiatives such a strategy could empower.

As CIMMYT and IITA directors general Martin Kropff and Nteranya Sanginga note in a recent op-ed, “The global battle against climate change and all its interconnected impacts requires a multisectoral approach to formulate comprehensive responses.”

First complete cytological characterization of the 2NvS translocation

Wheat infected with the blast fungus in Meherpur, Bangladesh, in 2019. (Photo: PLOS Biology)
Wheat infected with the blast fungus in Meherpur, Bangladesh, in 2019. (Photo: PLOS Biology)

As scientists study and learn more about the complicated genetic makeup of the wheat genome, one chromosomal segment has stood out, particularly in efforts to breed high-yielding wheat varieties resistant to devastating and quickly spreading wheat diseases.

Known as the 2NvS translocation, this segment on the wheat genome has been associated with grain yield, tolerance to wheat stems bending over or lodging, and multiple-disease resistance.

Now, thanks to a new multi-institution study led by wheat scientist Liangliang Gao of Kansas State University, we have a clearer picture of the yield advantage and disease resistance conferred by this chromosomal segment for wheat farmers — and more opportunities to capitalize on these benefits for future breeding efforts.

The Aegilops ventricosa 2NvS segment in bread wheat: cytology, genomics and breeding, published in Theoretical and Applied Genetics, summarizes the collaborative effort by scientists from several scientific institutions — including International Maize and Wheat Improvement Center (CIMMYT) head of global wheat improvement Ravi Singh and wheat scientist Philomin Juliana —  to conduct the first complete cytological characterization of the 2NvS translocation.

A rich background

The 2NvS translocation segment has been very valuable in disease-resistance wheat breeding since the early 1990s. Originally introduced into wheat cultivar VPM1 by the French cytogeneticist Gerard Doussinault in 1983 by crossing with a wild wheat relative called Aegilops ventricosa, the segment has been conferring resistance to diseases like eye spot (Pch1 gene), leaf rust (Lr37 gene), stem rust (Sr38 gene), stripe rust (Yr17 gene), cereal cyst (Cre5 gene), root knot (Rkn3 gene) and wheat blast.

The high-yielding blast-resistant CIMMYT-derived varieties BARI Gom 33 and WMRI#3 (equivalent to Borlaug100),released in Bangladesh to combat a devastating outbreak of wheat blast in the region, carry the 2NvS translocation segment for blast resistance.

Earlier research by Juliana and others found that the proportion of lines with the 2NvS translocation had increased by 113.8% over seven years in CIMMYT’s international bread wheat screening nurseries: from 44% in 2012 to 94.1% in 2019. It had also increased by 524.3% in the semi-arid wheat screening nurseries: from 15% in 2012 to 93.7% in 2019. This study validates these findings, further demonstrating an increasing frequency of the 2NvS translocation in spring and winter wheat breeding programs over the past two decades.

New discoveries

The authors of this study completed a novel assembly and functional annotation of the genes in the 2NvS translocation using the winter bread wheat cultivar Jagger. They validated it using the spring wheat cultivar CDC Stanley and estimated the actual size of the segment to be approximately 33 mega base pairs.

Their findings substantiate that the 2NvS region is rich in disease resistance genes, with more than 10% of the 535 high-confidence genes annotated in this region belonging to the nucleotide-binding leucine-rich repeat (NLR) gene families known to be associated with disease resistance.  This was a higher number of NLRs compared to the wheat segment of the Chinese Spring reference genome that was replaced by this segment, adding further evidence to its multiple-disease resistant nature.

In addition to being an invaluable region for disease resistance, the study makes a strong case that the 2NvS region also confers a yield advantage.  The authors performed yield association analyses using yield data on lines from the Kansas State University wheat breeding program, the USDA Regional Performance Nursery —comprising lines from central US winter wheat breeding programs — and the CIMMYT spring bread wheat breeding program, and found a strong association between the presence of the segment and higher yield.

Global benefits

The yield and disease resistance associations of the 2NvS genetic segment have been helping farmers for years, as seen in the high proportion of the segment present in the improved wheat germplasm distributed globally through CIMMYT’s nurseries.

“The high frequency of the valuable 2NvS translocation in CIMMYT’s internationally distributed germplasm demonstrates well how CIMMYT has served as a key disseminator of lines with this translocation globally that would have likely contributed to a large impact on global wheat production,” said study co-author Juliana.

Through CIMMYT’s distribution efforts, it is likely that national breeding programs have also effectively used this translocation, in addition to releasing many 2NvS-carrying varieties selected directly from CIMMYT distributed nurseries.

With this study, we now know more about why the segment is so ubiquitous and have more tools at our disposal to use it more deliberately to raise yield and combat disease for wheat farmers into the future.

Breeders take quantum leap

A CIMMYT technician cuts a leaf sample for DNA extraction. (Photo: CIMMYT)
A CIMMYT technician cuts a leaf sample for DNA extraction. (Photo: CIMMYT)

Wheat breeders from across the globe took a big step towards modernizing their molecular breeding skills at a recent workshop sponsored by the Wheat Initiative, with the CGIAR Excellence in Breeding Platform (EiB) and the International Maize and Wheat Improvement Center (CIMMYT).

The workshop focused on three open-source tools used in molecular breeding: GOBii-GDM for genomic data management, Flapjack for data visualization and breeding analysis, and Galaxy for Genomic Selection. These tools help breeders make selections more quickly and precisely, and ultimately lead to more cost effective and efficient improvement of varieties.

The Wheat Initiative — a global scientific collaboration whose goals are to create improved wheat varieties and disseminate better agronomic practices worldwide — and its Breeding Methods and Strategies expert working group had planned to host these trainings during the 2020 Borlaug Global Rust Initiative Technical Workshop in the United Kingdom. After it became obvious that in-person trainings were not possible, the course organizers — including CIMMYT molecular wheat breeder Susanne Dreisigacker and EiB Adoption Lead and former GOBii project director Elizabeth Jones — decided to come together to host online workshops.

Many of the tools will be incorporated into EiB’s Enterprise Breeding System (EBS), a new integrated data management system being developed for CGIAR breeders. Jones plans to also design training modules for these molecular breeding tools that will be accessible to anyone through the EiB Toolbox.

In the meantime, the tools used in the workshop are all freely available: DArTView, Flapjack (training videos), GOBii-GDM (request access through the web form or by email), and Galaxy Genomic Selection.

The first session of the workshop “Transforming Wheat Breeding Through Integrated Data Management with GOBii and Analysis in Flapjack” benefited breeders from Australia, Canada, Ethiopia, France, India, Ireland, Italy, Morocco, Pakistan, Switzerland, Tunisia, the United Kingdom and the United States.
The first session of the workshop “Transforming Wheat Breeding Through Integrated Data Management with GOBii and Analysis in Flapjack” benefited breeders from Australia, Canada, Ethiopia, France, India, Ireland, Italy, Morocco, Pakistan, Switzerland, Tunisia, the United Kingdom and the United States.
Susanne Dreisigacker presents during one of the sessions of the workshop.
Susanne Dreisigacker presents during one of the sessions of the workshop.

Powering data analysis around the world

The workshop series, “Transforming Wheat Breeding Through Integrated Data Management with GOBii and Analysis in Flapjack,” aimed to benefit breeders from wheat producing countries all over the world, with sessions over two different time zones spread out over three days to reduce “Zoom fatigue.” Participants joined the first session from Australia, Canada, Ethiopia, France, India, Ireland, Italy, Morocco, Pakistan, Switzerland, Tunisia, the United Kingdom and the United States.

“It was wonderful to see the diversity of participants that we were able to train through an online workshop, many of whom otherwise might not have been able to travel to the UK for the original meeting,” said Jones. “Participants were very engaged, making the workshop so rewarding.”

The workshop was guided by Teresa Saavedra, Wheat Initiative coordinator. Apart from Dreisigacker and Jones, other trainers explained specific tools and approaches. Iain Milne from the James Hutton Institute in Scotland gave more details about the Flapjack genotyping visualization tool, which includes analysis for pedigree verification, marker assisted backcrossing and forward breeding. Andrew Kowalczyk, developer at Diversity Arrays Technology, spoke about the genotyping data QC tool DArTView.

A CIMMYT technician performs one of the steps to extract DNA samples from plants. (Photo: CIMMYT)
A CIMMYT technician performs one of the steps to extract DNA samples from plants. (Photo: CIMMYT)

Clay Sneller, wheat breeder at Ohio State University, contributed training materials for important molecular breeding tools. Carlos Ignacio, previously based at the International Rice Research Center (IRRI) and now working on a PhD in Genomic Selection at Ohio State University, contributed his experience as a GOBii team member and a major contributor towards the design of Flapjack tools. Star Gao, application specialist with GOBii and now a requirements analyst for the Enterprise Breeding System, also facilitated the sessions.

Gilles Charmet, research director at the France’s National Research Institute for Agriculture, Food and Environment (INRAE), introduced the sessions in the Americas/Europe time zone with welcome remarks and overview of the goals of the Wheat Initiative. Alison Bentley, director of the CIMMYT Global Wheat Program, briefed on the achievements and goals of the CIMMYT Wheat program and the Accelerating Genetic Gains in Maize and Wheat for Improved Livelihoods (AGG) project.

“This training will contribute towards us reaching our AGG goals of accelerating gains in wheat, by sharing technical knowledge, and allowing our beneficiary partners to have state-of-the-art know-how in the use of genetic and genomic data,” Bentley said.

Participant Stéphane Boury from Caussade Semences, France commented, “This was a very effective way to learn about new tools in wheat breeding.”

The sessions continue in Australasia next week, and will be introduced by Peter Langridge, chair of the Scientific Board for the Wheat Initiative, and EiB director Michael Quinn. Sanjay Kumar Singh, incoming chair of the Breeding expert working group for the Wheat Initiative, will close the event.

Heat and Drought Wheat Improvement Consortium (HeDWIC)

The Heat and Drought Wheat Improvement Consortium (HeDWIC) is a global research and capacity building network that takes wheat research from the theoretical to the practical by incorporating the best science into real-life breeding scenarios.

By harnessing the latest technologies in crop physiology, genetics and breeding, HeDWIC makes it easier for wheat scientists to work together on solutions to the complex problems of heat and drought adaptation, contributing to the development of new, climate-resilient wheat varieties for farmers. HeDWIC-associated scientists examine current breeding material and collections held in germplasm banks and apply genomic and phenomic tools to identify novel diversity for heat, drought adaptative traits. This results in novel pre-bred lines in terms of genetic diversity for key stress-adaptive traits suitable for use in breeding programs and/or re-selection as cultivars.

The consortium delivers these lines to public and private wheat programs worldwide via the International Wheat Improvement Network (IWIN) — coordinated for more than half a century by the International Maize and Wheat Improvement Center (CIMMYT) — as international public goods whose global impacts are well documented. Through PhD sponsorships and other opportunities for involvement in research, HeDWIC also provides hands-on training to young scientists, preparing a new generation of crop experts to tackle the pressing issues of crop adaptation under future climate scenarios.

HeDWIC adds value to developing more climate-resilient wheat varieties by:

  • Facilitating global coordination of wheat research related to heat and drought stress in partnership with the Wheat Initiative.
  • Developing research and breeding technologies in response to the priorities of stakeholders: researchers, breeders, farmers, seed companies, national programs, and funding organizations.
  • Connecting geographically and agro-climatically diverse sites for rigorous testing of promising concepts.
  • Curating data resources for use by the global wheat research community.
  • Accelerating the deployment of new knowledge and strategies for developing more climate resilient wheat.
  • Preparing a new generation of promising young scientists from climate-affected regions to tackle crop improvement challenges faced by their own countries.
  • Building additional scientific capacity of wheat researchers in a coordinated fashion that enables a faster response to productivity threats associated with climate change.
  • Enabling farmers to adapt to wheat production in a hotter and drier climate faster due to the coordinated effort and synergy lent by HeDWIC.

HeDWIC is directly funded by the Foundation for Food and Agriculture Research (FFAR) and is supported by in-kind contributions from IWIN, the Bill & Melinda Gates Foundation/UK Foreign, Commonwealth and Development Office (FCDO)-funded Accelerating Genetic Gains in Maize and Wheat for Improved Livelihoods (AGG) project, the CGIAR Research Program on Wheat (WHEAT), the International Wheat Yield Partnership, the Wheat Initiative’s AHEAD, and many international partners who support research and capacity building activities through ongoing collaboration.

It also builds on decades of breeding and collaborative research under abiotic stress coordinated by CIMMYT, with support from agencies including Mexico’s Secretariat of Agriculture and Rural Development (SADER), the CGIAR Trust Fund —in particular the Australian Centre for International Agricultural Research (ACIAR), the UK Foreign, Commonwealth and Development Office (FCDO), and the US Agency for International Development (USAID) — Australia’s Grains Research Development Corporation (GRDC), Germany’s Ministry of Agriculture (BMEL), the Bill & Melinda Gates Foundation, the US Department of Agriculture (USDA), and others.

Australia’s High Commissioner visits Borlaug Institute for South Asia to witness sustainable intensification of agriculture

Australia’s High Commissioner to India, Barry O’ Farrell (left), observes the use of drone technology at the BISA experimental station in Ludhiana, India. (Photo: Uttam Kumar/CIMMYT).
Australia’s High Commissioner to India, Barry O’ Farrell (left), observes the use of drone technology at the BISA experimental station in Ludhiana, India. (Photo: Uttam Kumar/CIMMYT).

Australia’s High Commissioner to India, Barry O’Farrell, visited the Borlaug Institute for South Asia (BISA) in Ludhiana, India, on January 20, 2021 along with his delegation.

O’Farrell acknowledged the historic role of the International Maize and Wheat Improvement Center (CIMMYT) sharing the seeds of the most recent, climate-resilient, high-yielding, and disease-resistant wheat genotypes. He also appreciated that this work is being continued with even greater vigor by BISA for the benefit of India and the whole of South Asia.

The High Commissioner was happy to note that wheat germplasm is freely shared with public and private sector national partners under constant guidance and collaboration with the Indian Council of Agricultural Research (ICAR) and the Department of Agriculture Research and Education (DARE).

O’Farrell emphasized the strong collaboration between Indian and Australian research institutes. He called for even more cross-learning between scientists and other stakeholders for research, policy and capacity development in the areas of land, water, climatic resilience, environmental sustainability and germplasm enhancement for the benefit of farmers of both countries.

Witnessing science in action

Arun Kumar Joshi, CIMMYT Regional Representative for Asia and Managing Director of BISA, welcomed the group and briefed the visitors on CIMMYT and BISA’s collaboration with ICAR and DARE.

H.S. Sidhu, Principal Research Engineer at BISA, and M.L. Jat, Principal Scientist and Systems Agronomist at CIMMYT, presented the major challenges and research outputs related to climate change, the food-energy-water nexus and the overall agricultural sustainability challenges faced by India.

One of the successful examples of collaboration between Australia and India is the Happy Seeder, which addresses these challenges through conservation agriculture and sustainable intensification. O’Farrell saw the expansive wheat fields sown with the Happy Seeder and was impressed by the technology.

The group also discussed the evidence-based policy changes that have taken place, as well as future strategies for accelerated impact through new approaches, like carbon farming. A detailed discussion took place on climate-smart agriculture research, with a focus on precision water and nutrient management using digital agriculture technologies and their complementarity for boosting Happy Seeder uptake.

The High Commissioner and his delegation also visited the wheat breeding program, where CIMMYT researcher Uttam Kumar explained the development of wheat genotypes — in collaboration with ICAR-DARE and the national agriculture research system — for a range of environments, management conditions, and against various stresses, with the ultimate objective of serving the needs of smallholder farmers.

O’Farrell also appreciated the BISA-designed Phenocart for high-throughput precision phenotyping in wheat improvement. O’Farrell highlighted and appreciated that this season, BISA is conducting the largest wheat breeding trial in South Asia: currently more than 60,000 plots are planted at the BISA station in Ludhiana alone.