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Theme: Innovations

Working with smallholders to understand their needs and build on their knowledge, CIMMYT brings the right seeds and inputs to local markets, raises awareness of more productive cropping practices, and works to bring local mechanization and irrigation services based on conservation agriculture practices. CIMMYT helps scale up farmers’ own innovations, and embraces remote sensing, mobile phones and other information technology. These interventions are gender-inclusive, to ensure equitable impacts for all.

Earlier wheat planting will boost yields in eastern India

“For several years, we’ve been building dense data sets with colleagues from the Indian Agricultural Research Council, which have allowed us to unravel complex farm realities through big data analytics, and to determine what agricultural management practices really matter in smallholder systems,” said Andrew McDonald ’94, M.S. ’98, Ph.D. ’03, associate professor of soil and crop sciences in the College of Agriculture and Life Sciences. “This process has confirmed that planting dates are the foundation for climate resilience and productivity outcomes in the dominant rice-wheat cropping systems in the eastern sector in India.”

McDonald is first author of “Time Management Governs Climate Resilience and Productivity in the Coupled Rice-Wheat Cropping Systems of Eastern India,” published July 21 in Nature Food with a consortium of national and international partners, including scientists from the International Maize and Wheat Improvement Center (CIMMYT).

The research was conducted through the  Cereal Systems Initiative for South Asia (CSISA). CSISA, which is led by CIMMYT with the International Rice Research Institute and the International Food Policy Research Institute as research partners, was established in 2009 to promote durable change at scale in South Asia’s cereal-based cropping systems.

Researchers found that farmers in eastern India could increase yield by planting wheat earlier – avoiding heat stress as the crop matures – and quantified the potential gains in yields and farm revenues for the region. They also found that the intervention would not negatively impact rice productivity, a key consideration for farmers. Rice alternates with wheat on the cropping calendar, with many farmers growing rice in the wet season and wheat in the dry season.

The study also provides new recommendations for rice sowing dates and types of cultivars, to accommodate the earlier sowing of wheat.

“Farmers are not just managing single crops. They are managing a sequence of decisions,” said McDonald, who has a joint appointment in the Department of Global Development. “Taking a cropping systems approach and understanding how things cascade and interlink informs our research approach and is reflected in the recommendations that emerged from this analysis. Climate resilient wheat starts with rice.”

The research is the result of years of collaboration with international groups and government agencies in India, which have identified the Eastern Ganges Plain as the area with the most potential growth in production. The region will become essential, McDonald said, as the demand for wheat grows, and climate change makes production more difficult and unpredictable; just this year, record heat waves in March and April and food shortages caused by the war in Ukraine – both of which prompted India’s government to instate a ban on wheat exports – have highlighted the need for increased yields and more sustainable farming practices.

“In the bigger sense, this research is timely because the hazards of climate change aren’t just a hypothetical,” McDonald said. “Many of these areas are stress-prone environments, and extreme weather already constrains productivity. Identifying pragmatic strategies that help farmers navigate current extremes will establish a sound foundation for adapting to progressive climate change.”

Poverty is endemic in the Eastern Ganges Plain, and the region is dominated by small landholders, with varying practices and access to resources. The breadth and specificity of the data collected and analyzed in the study – including field and household survey data, satellite data, and dynamic crop simulations – allowed researchers to understand regional small farms’ challenges and the barriers to change.

“At the end of the day, none of this matters unless farmers opt in,” McDonald said. “There’s a spatial dimension and a household dimension to opportunity.  If we can  target approaches accordingly, then we hope to position farmers to make management changes that will benefit the entire food system.”

The study was co-authored with researchers from the Australian Department of Primary Industries and Regional Development, the International Rice Research Institute, the International Maize and Wheat Improvement Center, the International Food Policy Research Institute, the Indian Council of Agricultural Research and Bihar Agricultural University. The research was supported by the Bill and Melinda Gates Foundation and the U.S. Agency for International Development through grants to the Cereal Systems Initiative for South Asia, which is led by the International Maize and Wheat Improvement Center.

This piece by Caitlin Hayes, was originally posted on the Cornell Chronicle website.

Institutionalizing Monitoring of Crop Variety Adoption using Genotyping (IMAGE)

Institutionalizing Monitoring of Crop Variety Adoption using Genotyping (IMAGE) is a five-year program with the aim of establishing, institutionalizing, and scaling routine monitoring of improved variety adoption and turnover using genotyping.

It is led by country teams in Ethiopia, Nigeria and Tanzania, supported by Context Global Development and the Bill & Melinda Gates Foundation.

Reliable monitoring: IMAGE will assess the varieties that farmers are growing of four staple crops within the three target countries and marking the rate of improved variety adoption through recurring surveys and comparative analysis.

Vision for change: IMAGE supports inclusive agricultural transformation by providing insights and evidence for seed sector actors to enhance government agency capacity, improve stakeholder coordination, and lead to better resource allocation for varietal development and commercialization.

Project objectives:

  • Enable a national leadership mandate to monitor crop varieties and adoption
  • Build a network of technical experts and service providers to provide personalized advisory support
  • Establish best practices that enable routine monitoring and produce credible results
  • Form a sustainable funding mechanism based on use cases with government and stakeholder buy-in
  • Advocate for institutional capacity for reliable monitoring programs

IMAGE provides the opportunity to leverage past monitoring pilots and for cross-country learnings while advancing genetic reference libraries, establishing protocol adoption, and building towards institutionalization over five years. This is done through six objectives:

  • Comparable estimates of varietal adoption and turnover will be generated and made available to stakeholders​
  • Standardization of best-practices ​and supporting technologies​
  • Establishment of ​sustainable business cases
  • Pilot study results on varietal identity preservation in seed value chains for each country-crop combination ​
  • Institutionalized system of ​varietal monitoring for long-term, sustainable national partner implementation
  • Generated data used by seed sector stakeholders to make key decisions​

Ecological farming a boon for staple crop farmers in Africa, new study finds

Elufe Chipande (left), a farmer at Songani in Zomba District, Malawi, is rotating maize (background) and pigeonpea (foreground) under conservation agriculture practices to improve soil fertility and capture and retain more water. Christian Thierfelder (center), a cropping systems agronomist working out of the Zimbabwe office of CIMMYT, advises and supports southern African farmers and researchers to refine and spread diverse yield-enhancing, resource-conserving crop management practices. Photo: Mphatso Gama/CIMMYTSRUC

An international team of scientists has found that eco-friendly practices such as growing a range of crops, including legumes such as beans or pigeonpea, and adding plant residues or manure to soils can raise food crop yields in places such as rural Africa, where small-scale farmers cannot apply much nitrogen fertilizer.

Published in the science journal Nature Sustainability and examining data from 30 long-running field experiments involving staple crops (wheat, maize, oats, barley, sugar beet, or potato) in Europe and Africa, this major study is the first to compare farm practices that work with nature to increase yields and explore how they interact with fertilizer use and tillage.

“Agriculture is a leading cause of global environmental change but is also very vulnerable to that change,” said Chloe MacLaren, a plant ecologist at Rothamsted Research, UK, and lead author of the paper. “Using cutting-edge statistical methods to distill robust conclusions from divergent field experiment data, we found combinations of farming methods that boost harvests while reducing synthetic fertilizer overuse and other environmentally damaging practices.”

Recognizing that humanity must intensify production on current arable land to feed its rising numbers, the paper advances the concept of “ecological intensification,” meaning farming methods that enhance ecosystem services and complement or substitute for human-made inputs, like chemical fertilizer, to maintain or increase yields.

Boosting crop yields and food security for far-flung smallholders

The dataset included results from six long-term field experiments in southern Africa led by the International Maize and Wheat Improvement Center (CIMMYT). Africa’s farming systems receive on average only 17 kilograms of fertilizer per hectare, compared to more than 180 kilograms per hectare in Europe or close to 600 in China, according to Christian Thierfelder, a CIMMYT cropping systems agronomist and study co-author.

“In places where farmers’ access to fertilizer is limited, such as sub-Saharan Africa or the Central American Highlands, ecological intensification can complement scarce fertilizer resources to increase crop yields, boosting households’ incomes and food security,” Thierfelder explained. “We believe these practices act to increase the supply of nitrogen to crops, which explains their value in low-input agriculture.”

The CIMMYT long-term experiments were carried out under “climate-smart” conservation agriculture practices, which include reduced or no tillage, keeping some crop residues on the soil, and (again) growing a range of crops.

“These maize-based cropping systems showed considerable resilience against climate effects that increasingly threaten smallholders in the Global South,” Thierfelder added.

Benefits beyond yield

Besides boosting crop yields, ecological intensification can cut the environmental and economic costs of productive farming, according to MacLaren.

“Diversifying cropping with legumes can increase profits and decrease nitrogen pollution by reducing the fertilizer requirements of an entire crop rotation, while providing additional high-value food, such as beans,” MacLaren explained. “Crop diversity can also confer resilience to weather variability, increase biodiversity, and suppress weeds, crop pests and pathogens; it’s essential, if farmers are to improve maize production in places like Africa.”

Thierfelder cautioned that widespread adoption of ecological intensification will require strong support from policymakers and society, including establishing functional markets for legume seed and for marketing farmers’ produce, among other policy improvements.

“Dire and worsening global challenges — climate change, soil degradation and fertility declines, and scarcening fresh water — threaten the very survival of humanity,” said Thierfelder. “It is of utmost importance to renovate farming systems and bring us back into a safe operating space.”

Click here to read the paper, Long-term evidence for ecological intensification as a pathway to sustainable agriculture.

For more information or interviews:

Rodrigo Ordoñez, Communications Manager

Email: r.ordonez@cgiar.org

Tel: +52 55 5804 2004, ext. 1167

 

Former director general Timothy Reeves included in Queen’s Birthday Honours List

Timothy Reeves. (Photo: Courtesy of Tim Reeves/University of Melbourne)
Timothy Reeves. (Photo: Courtesy of Tim Reeves/University of Melbourne)

Timothy Reeves, who served as director general of the International Maize and Wheat Improvement Center (CIMMYT) from 1995 to 2002, has been included in Queen Elizabeth II’s Birthday Honours List. He has been appointed a Member (AM) of the Order of Australia, for his significant service to sustainable agriculture research and production.

“I’m overwhelmed. I feel so honored and wish to also recognize the wonderful people that I have worked with — both farmers and scientists — here in Australia, and around the world. I also acknowledge my beautiful family without whom it would have not been possible,” he said.

Reeves was a pioneer of direct drilling and conservation agriculture in Australia in the 1960s and 70s. This method of planting crops which requires no cultivation of the land, is now the direct-drilling method used by 90% of farmers across Australian cropping regions. He and colleagues in the Victorian Department of Agriculture also worked at that time on the introduction of new crops into farming systems, including lupins, canola and faba beans.

Timothy Reeves (center) with C. Renard (left) and Norman Borlaug. (Photo: CIMMYT)
Timothy Reeves (center) with C. Renard (left) and Norman Borlaug. (Photo: CIMMYT)

He was appointed to the role of director general of CIMMYT in 1995, based in Mexico for seven years, helping developing countries with food and nutritional security. He is the only Australian to have held this position.

Reeves is currently an Honorary Professorial Fellow at the Faculty of Veterinary and Agricultural Sciences, University of Melbourne. He is heavily involved with passing on his knowledge to his academic colleagues and to both undergraduate and postgraduate students. Reeves’s academic writings include publishing more than 180 papers, book chapters and articles. He is also a Chair of the Agriculture Forum of the Australian Academy of Technological Sciences and Engineering.

This post was originally published by the University of Melbourne.

CRISPR, 10 years on: Learning to rewrite the code of life

In just a decade, CRISPR has become one of the most celebrated inventions in modern biology. It is swiftly changing how medical researchers study diseases: Cancer biologists are using the method to discover hidden vulnerabilities of tumor cells. Doctors are using CRISPR to edit genes that cause hereditary diseases.

But CRISPR’s influence extends far beyond medicine. Evolutionary biologists are using the technology to study Neanderthal brains and to investigate how our ape ancestors lost their tails. Plant biologists have edited seeds to produce crops with new vitamins or with the ability to withstand diseases. Some of them may reach supermarket shelves in the next few years.

Read more: https://www.nytimes.com/2022/06/27/science/crispr-gene-editing-10-years.html

New CIMMYT maize hybrid available from the Latin America Breeding Program

How does CIMMYT’s improved maize get to the farmer?
How does CIMMYT’s improved maize get to the farmer?

CIMMYT is proud to announce a new improved subtropical maize hybrid that is now available for uptake by public and private sector partners, especially those interested in marketing or disseminating hybrid maize seed across mid-altitudes of Mexico and similar agro-ecologies. National agricultural research systems (NARS) and seed companies are invited to apply for a license to commercialize this new hybrid to bring the benefits of the improved seed to farming communities.

The deadline to submit applications is 15 August 2022. Applications received after that date will be considered during the following round of product allocations.

The newly available CIMMYT maize hybrid, CIM20LAPP2B-2, was identified through rigorous trialing and a stage-gate advancement process that culminated in the 2020 Stage 5 trials for CIMMYT’s Latin American tropical mid-altitude maize breeding pipeline (LA-PP2B). While individual products will vary, the LA-PP2B pipeline aims to develop maize hybrids fitting the product profile described in the following table:

Product Profile Basic traits Nice-to-have / Emerging traits
Latin America Product Profile 2B (LA-PP2B) Intermediate-maturing, yellow kernel, high-yielding, drought tolerant, resistant to FSR, GLS, and ear rots TSC, TLB

 

Information about the newly available CIMMYT maize hybrid from the Latin America breeding program, application instructions, and other relevant material is available in the CIMMYT Maize Product Catalog and the links provided below.

Use the following link to access the full CIMMYT Stage 4 and Stage 5 Trials in Mexico: Results of the 2019 and 2020 Trials and Product Announcement, including the trial performance summary data and trial location data.

Applications must be accompanied by a proposed commercialization plan for each product being requested. Applications may be submitted online via the CIMMYT Maize Licensing Portal and will be reviewed in accordance with CIMMYT’s Principles and Procedures for Acquisition and use of CIMMYT maize hybrids and OPVs for commercialization. Specific questions or issues faced with regard to the application process may be addressed to GMP-CIMMYT@cgiar.org with attention to Nicholas Davis, Program Manager, Global Maize Program, CIMMYT.

APPLY FOR A LICENSE

Galvanized leaf storage proteins serve as a nutrient lifeline for maize under drought, recent study says

For the first time ever, a biotechnology team has identified vegetative storage proteins (VSP) in maize and activated them in the leaves to stockpile nitrogen reserves for release when plants are hit by drought, which also causes nutrient stress, according to a recent report in Plant Biotechnology Journal. In two years of field testing, the maize hybrids overexpressing the VSP in leaf cells significantly out-yielded the control siblings under managed drought stress applied at the flowering time, according to Kanwarpal Dhugga, a principal scientist at the International Maize and Wheat Improvement Center (CIMMYT).

“One of the two most widely grown crops, maize increasingly suffers from erratic rainfall and scarcer groundwater for irrigation,” Dhugga said. “Under water stress, nitrogen availability to the plant is also attenuated. If excess nitrogen could be stored in the leaves during normal plant growth, it could help expedite the plant’s recovery from unpredictable drought episodes. In our experimental maize hybrids, this particular VSP accumulated to more than 4% in mesophyll cells, which is five times its normal levels, and offered an additional, dispensable source of nitrogen that buffered plants against water deficit stress.”

Dhugga noted as well that the study, whose authors include scientists from Corteva Agriscience, the Bill & Melinda Gates Foundation, and the US Department of Agriculture (USDA), provides experimental evidence for the link between drought tolerance and adequate nitrogen fertilization of crop plants. “This mechanism could also help farmers and consumers in sub-Saharan Africa, where maize is grown on nearly 40 million hectares, accounts for almost one-third of the region’s caloric intake, and frequently faces moderate to severe drought.”

Scientists multiply and power up vegetative storage proteins in maize leaves as nutrient stockpiles for drought-stressed maize crops. Graphic adapted from: Pooja Gupta, Society for Experimental Biology (SEB).

Read the full study:
A vegetative storage protein improves drought tolerance in maize.

A climate-smart remodeling of South Asia’s rice-wheat cropping is urgent

A climate change hotspot region that features both small-scale and intensive farming, South Asia epitomizes the crushing pressure on land and water resources from global agriculture to feed a populous, warming world. Continuous irrigated rice and wheat cropping across northern India, for example, is depleting and degrading soils, draining a major aquifer, and producing a steady draft of greenhouse gases.

Through decades-long Asian and global partnerships, the International Maize and Wheat Improvement Center (CIMMYT) has helped to study and promote resource-conserving, climate-smart solutions for South Asian agriculture. Innovations include more precise and efficient use of water and fertilizer, as well as conservation agriculture, which blends reduced or zero-tillage, use of crop residues or mulches as soil covers, and more diverse intercrops and rotations. Partners are recently exploring regenerative agriculture approaches — a suite of integrated farming and grazing practices to rebuild the organic matter and biodiversity of soils.

Along with their environmental benefits, these practices can significantly reduce farm expenses and maintain or boost crop yields. Their widespread adoption depends in part on enlightened policies and dedicated promotion and testing that directly involves farmers. We highlight below promising findings and policy directions from a collection of recent scientific studies by CIMMYT and partners.

Getting down in the dirt

A recent scientific review examines the potential of a suite of improved practices — reduced or zero-tillage with residue management, use of organic manure, the balanced and integrated application of plant nutrients, land levelling, and precise water and pest control — to capture and hold carbon in soils on smallholder farms in South Asia. Results show a potential 36% increase in organic carbon in upper soil layers, amounting to some 18 tons of carbon per hectare of land and, across crops and environments, potentially cutting methane emissions by 12%. Policies and programs are needed to encourage farmers to adopt such practices.

Another study on soil quality in India’s extensive breadbasket region found that conservation agriculture practices raised per-hectare wheat yields by nearly half a ton and soil quality indexes nearly a third, over those for conventional practices, as well as reducing greenhouse gas emissions by more than 60%.

Ten years of research in the Indo-Gangetic Plains involving rice-wheat-mungbean or maize-wheat-mungbean rotations with flooded versus subsoil drip irrigation showed an absence of earthworms — major contributors to soil health — in soils under farmers’ typical practices. However, large earthworm populations were present and active under climate-smart practices, leading to improved soil carbon sequestration, soil quality, and the availability of nutrients for plants.

The field of farmer Ram Shubagh Chaudhary, Pokhar Binda village, Maharajganj district, Uttar Pradesh, India, who has been testing zero tillage to sow wheat directly into the unplowed paddies and leaving crop residues, after rice harvest. Chaudhary is one of many farmer-partners in the Cereal Systems Initiative for South Asia (CSISA), led by CIMMYT. (Photo: P. Kosina/CIMMYT)
The field of farmer Ram Shubagh Chaudhary, Pokhar Binda village, Maharajganj district, Uttar Pradesh, India, who has been testing zero tillage to sow wheat directly into the unplowed paddies and leaving crop residues, after rice harvest. Chaudhary is one of many farmer-partners in the Cereal Systems Initiative for South Asia (CSISA), led by CIMMYT. (Photo: P. Kosina/CIMMYT)

Rebooting marginal farms by design

Using the FarmDESIGN model to assess the realities of small-scale, marginal farmers in northwestern India (about 67% of the population) and redesign their current practices to boost farm profits, soil organic matter, and nutritional yields while reducing pesticide use, an international team of agricultural scientists demonstrated that integrating innovative cropping systems could help to improve farm performance and household livelihoods.

More than 19 gigatons of groundwater is extracted each year in northern India, much of this to flood the region’s puddled, transplanted rice crops. A recent experiment calibrated and validated the HYDRUS-2D model to simulate water dynamics for puddled rice and for rice sown in non-flooded soil using zero-tillage and watered with sub-surface drip irrigation. It was found that the yield of rice grown using the conservation agriculture practices and sub-surface drip irrigation was comparable to that of puddled, transplanted rice but required only half the irrigation water. Sub-surface drip irrigation also curtailed water losses from evapotranspiration and deep drainage, meaning this innovation coupled with conservation agriculture offers an ecologically viable alternative for sustainable rice production.

Given that yield gains through use of conservation agriculture in northern India are widespread but generally low, a nine-year study of rice-wheat cropping in the eastern Indo-Gangetic Plains applying the Environmental Policy Climate (EPIC) model, in this case combining data from long-term experiments with regionally gridded crop modeling, documented the need to tailor conservation agriculture flexibly to local circumstances, while building farmers’ capacity to test and adapt suitable conservation agriculture practices. The study found that rice-wheat productivity could increase as much as 38% under conservation agriculture, with optimal management.

Key partner organizations in this research include the following: Indian Council of Agricultural Research (ICAR); Central Soil Salinity Research Institute (CSSRI), Indian Agricultural Research Institute (IARI), Indian Institute of Farming Systems Research (IIFSR), Agriculture University, Kota; CCS Haryana Agricultural University, Hisar; Punjab Agricultural University, Ludhiana; Sri Karan Narendra Agriculture University, Jobner, Rajasthan; the Borlaug Institute for South Asia (BISA); the Trust for Advancement of Agricultural Sciences, Cornell University; Damanhour University, Damanhour, Egypt; UM6P, Ben Guerir, Morocco; the University of Aberdeen; the University of California, Davis; Wageningen University & Research; and IFDC.

Generous funding for the work cited comes from the Bill & Melinda Gates Foundation, The CGIAR Research Programs on Wheat Agri-Food Systems (WHEAT) and Climate Change, Agriculture and Food Security (CCAFS), supported by CGIAR Fund Donors and through bilateral funding agreements), The Indian Council of Agricultural Research (ICAR), and USAID.

Cover photo: A shortage of farm workers is driving the serious consideration by farmers and policymakers to replace traditional, labor-intensive puddled rice cropping (shown here), which leads to sizable methane emissions and profligate use of irrigation water, with the practice of growing rice in non-flooded soils, using conservation agriculture and drip irrigation practices. (Photo: P. Wall/CIMMYT)

Nitrogen-Efficient Wheat Production Systems in the Indo-Gangetic Plains through Biological Nitrification Inhibition (BNI) Technology

The Nitrogen-Efficient Wheat Production Systems in the Indo-Gangetic Plains through Biological Nitrification Inhibition (BNI) Technology project aims to raise awareness of the benefits of new nitrogen-efficient wheat production systems among stakeholders in India.

By introducing technologies that maintain crop yield and quality, even with a reduced amount of nitrogen fertilizer, this project will also lessen the footprint of food production systems and combat environmental degradation.

Rapid Point-of-Care Diagnostics for Wheat Rusts (MARPLE)

MARPLE (Mobile And Real-time PLant disEase) diagnostics is a new innovative approach for fungal crop pathogen diagnostics developed by Diane Saunders’s team at the John Innes Centre.

MARPLE is the first operational system in the world using nanopore sequencing for rapid diagnostics and surveillance of complex fungal pathogens in situ. Generating results in 48 hours of field sampling, this new digital diagnostic strategy is leading revolutionary changes in plant disease diagnostics. Rapid strain level diagnostics are essential to quickly find new emergent strains and guide appropriate control measures.

Through this project, CIMMYT will:

  • Deploy and scale MARPLE to priority geographies and diseases as part of the Current and Emerging Threats to Crops Innovation Lab led by Penn State University / PlantVillage and funded by USAID’s Feed the Future.
  • Build national partner capacity for advanced disease diagnostics. We will focus geographically on Ethiopia, Kenya and Nepal for deployment of wheat stripe and stem rust diagnostics, with possible expansion to Bangladesh and Zambia (wheat blast).
  • Integrate this new in-country diagnostic capacity with recently developed disease forecasting models and early warning systems. Already functional for wheat stripe rust, the project plans to expand MARPLE to incorporate wheat stem rust and wheat blast.

Two approaches better than one: identifying spot blotch resistance in wheat varieties

Spot blotch, a major biotic stress challenging bread wheat production is caused by the fungus Bipolaris sorokiniana. In a new study, scientists from the International Maize and Wheat Improvement Center (CIMMYT) evaluate genomic and index-based selection to select for spot blotch resistance quickly and accurately in wheat lines. The former approach facilitates selecting for spot blotch resistance, and the latter for spot blotch resistance, heading and plant height.

Genomic selection

The authors leveraged genotyping data and extensive spot blotch phenotyping data from Mexico and collaborating partners in Bangladesh and India to evaluate genomic selection, which is a promising genomic breeding strategy for spot blotch resistance. Using genomic selection for selecting lines that have not been phenotyped can reduce the breeding cycle time and cost, increase the selection intensity, and subsequently increase the rate of genetic gain.

Two scenarios were tested for predicting spot blotch: fixed effects model (less than 100 molecular markers associated with spot blotch) and genomic prediction (over 7,000 markers across the wheat genome). The clear winner was genomic prediction which was on average 177.6% more accurate than the fixed effects model, as spot blotch resistance in advanced CIMMYT wheat breeding lines is controlled by many genes of small effects.

“This finding applies to other spot blotch resistant loci too, as very few of them have shown big effects, and the advantage of genomic prediction over the fixed effects model is tremendous”, confirmed Xinyao He, Wheat Pathologist and Geneticist at CIMMYT.

The authors have also evaluated genomic prediction in different populations, including breeding lines and sister lines that share one or two parents.

Spot blotch susceptible wheat lines (left) and resistant lines. (Photo: Xinyao He and Pawan Singh/CIMMYT)
Spot blotch susceptible wheat lines (left) and resistant lines. (Photo: Xinyao He and Pawan Singh/CIMMYT)

Index selection

One of the key problems faced by wheat breeders in selecting for spot blotch resistance is identifying lines that are genetically resistant to spot blotch versus those that escape and exhibit less disease by being late and tall. “The latter, unfortunately, is often the case in South Asia”, explained Pawan Singh, Head of Wheat Pathology at CIMMYT.

A potential solution to this problem is the use of selection indices that can make it easier for breeders to select individuals based on their ranking or predicted net genetic merit for multiple traits. Hence, this study reports the first successful evaluation of the linear phenotypic selection index and Eigen selection index method to simultaneously select for spot blotch resistance using the phenotype and genomic-estimated breeding values, heading and height.

This study demonstrates the prospects of integrating genomic selection and index-based selection with field based phenotypic selection for resistance in spot blotch in breeding programs.

Read the full study:
Genomic selection for spot blotch in bread wheat breeding panels, full-sibs and half-sibs and index-based selection for spot blotch, heading and plant height

Cover photo: Bipolaris sorokiniana, the fungus causing spot blotch in wheat. (Photo: Xinyao He and Pawan Singh/CIMMYT)

Diagram links physiological traits of wheat for yield potential

A generalized wiring diagram for wheat, as proposed by the authors. The diagram depicts the traits most commonly associated with the source (left) and sink (right) strengths and others that impact both the sink and source, largely dependent on growth stage (middle). TGW, thousand grain weight.
A generalized wiring diagram for wheat, as proposed by the authors. The diagram depicts the traits most commonly associated with the source (left) and sink (right) strengths and others that impact both the sink and source, largely dependent on growth stage (middle). TGW, thousand grain weight.

As crop yields are pushed closer to biophysical limits, achieving yield gains becomes increasingly challenging. Traditionally, scientists have worked on the premise that crop yield is a function of photosynthesis (source), the investment of assimilates into reproductive organs (sinks) and the underlying processes that enable and connect the expression of both. Although the original source-and-sink model remains valid, it must embrace more complexity, as scientific understanding improves.

A group of international researchers are proposing a new wiring diagram to show the interrelationships of the physiological traits that impact wheat yield potential, published on Nature Food. By illustrating these linkages, it shows connections among traits that may not have been apparent, which could serve as a decision support tool for crop scientists. The wiring diagram can inform new research hypotheses and breeding decisions, as well as research investment areas.

The diagram can also serve as a platform onto which new empirical data are routinely mapped and new concepts added, thereby creating an ever-richer common point of reference for refining models in the future.

“If routinely updated, the wiring diagram could lead to a paradigm change in the way we approach breeding for yield and targeting translational research,” said Matthew Reynolds, Distinguished Scientist and Head of Wheat Physiology at the International Maize and Wheat Improvement Center (CIMMYT) and lead author of the study. “While focused on yield potential, the tool can be readily adapted to address climate resilience in a range of crops besides wheat.”

Breeding milestone

The new wiring diagram represents a milestone in deterministic plant breeding. It dovetails simpler models with crop simulation models.

It takes into account how source and sink strengths may interact with wheat developmental stages to determine yield. For example, at the time of stem growth, spike growth or effective grain filling.

This diagram can be used to illustrate the relative importance of specific connections among traits in their appropriate phenological context and to highlight major gaps in knowledge. This graphical representation can also serve as a roadmap to prioritize research at other levels of integration, such as metabolomic or gene expression studies. The wiring diagram can be deployed to identify ways for improving elite breeding material and to explore untapped genetic resources for unique traits and alleles.

Yield for climate resilience

The wheat scientific community is hard at work seeking new ways to get higher yields more quickly to help the world cope with population growth, climate change, wars and stable supplies of calories and protein.

“To ensure food and nutritional security in the future, raising yields must be an integral component of making crops more climate-resilient. This new tool can serve as a roadmap to design the necessary strategies to achieve these goals,” said Jeff Gwyn, Program Director of the International Wheat Yield Partnership (IWYP).

— ENDS —

READ THE FULL PUBLICATION:

A wiring-diagram to integrate physiological traits of wheat yield potential

INTERVIEW OPPORTUNITIES:

Matthew Reynolds – Distinguished Scientist and Head of Wheat Physiology at the International Maize and Wheat Improvement Center (CIMMYT)

Gustavo Ariel Slafer – Research Professor at the Catalonian Institution for Research and Advanced Studies (ICREA) and Associate Professor of the University of Lleida

For more information or to arrange interviews, please contact the CIMMYT media team:

Marcia MacNeil and Rodrigo Ordóñez: https://staging.cimmyt.org/media-center/

ACKNOWLEDGEMENTS:

The study is an international collaboration of scientists from the International Maize and Wheat Improvement Center (CIMMYT), the Catalonian Institution for Research and Advanced Studies (ICREA), the Center for Research in Agrotechnology (AGROTECNIO), the University of Lleida, the University of Nottingham, the John Innes Centre, Lancaster University, Technische Universität München, CSIRO Agriculture & Food, and the International Wheat Yield Partnership (IWYP).

ABOUT CIMMYT:

The International Maize and Wheat Improvement Center (CIMMYT) is an international organization focused on non-profit agricultural research and training that empowers farmers through science and innovation to nourish the world in the midst of a climate crisis.

Applying high-quality science and strong partnerships, CIMMYT works to achieve a world with healthier and more prosperous people, free from global food crises and with more resilient agri-food systems. CIMMYT’s research brings enhanced productivity and better profits to farmers, mitigates the effects of the climate crisis, and reduces the environmental impact of agriculture.

CIMMYT is a member of CGIAR, a global research partnership for a food-secure future dedicated to reducing poverty, enhancing food and nutrition security, and improving natural resources.

For more information, visit staging.cimmyt.org.

ABOUT IWYP:

The International Wheat Yield Partnership (IWYP) represents a long-term global endeavor that utilizes a collaborative approach to bring together funding from public and private research organizations from a large number of countries. Over the first five years, the growing list of partners aims to invest up to US$100 million.

For more information, visit https://iwyp.org

CIMMYT scientists identify novel genomic regions associated with spot blotch resistance

Spot blotch, caused by the fungus Biopolaris sorokiniana poses a serious threat to bread wheat production in warm and humid wheat-growing regions globally, affecting more than 25 million hectares and resulting in huge yield losses.

Chemical control approaches, including seed treatment and fungicides, have provided acceptable spot blotch control. However, their use is unaffordable to resource-poor farmers and poses a hazard to health and the environment. In addition, “abiotic stresses like heat and drought that are widely prevalent in South Asia compound the problem, making varietal genetic resistance the last resort of farmers to combat this disease,” according to Pawan Singh, Head of Wheat Pathology at the International Maize and Wheat Improvement Center (CIMMYT). Therefore, one of CIMMYT’s wheat research focus areas is developing wheat varieties that carry genetic resistance to the disease.

Signs of spot blotch on wheat. (Photo: Philomin Juliana/CIMMYT)
Signs of spot blotch on wheat. (Photo: Philomin Juliana/CIMMYT)

Previously, only four spot blotch resistance genes in bread wheat had been identified. Through a new study, CIMMYT scientists have identified novel genomic regions associated with spot blotch resistance using the genome-wide association mapping approach with 6,736 advanced breeding lines from different years (2013 to 2020), evaluated at CIMMYT’s spot blotch screening platform in Agua Fría, in Mexico’s state of Morelos.

The study’s results are positive and confirmed that:

  • Many advanced CIMMYT breeding lines have moderate to high resistance to spot blotch.
  • Resistance to the disease is conferred quantitatively by several minor genomic regions that act together in an additive manner to confer resistance.
  • There is an association of the 2NS translocation from the wild species Aegilops ventricosa with spot blotch resistance.
  • There is also an association of the spot blotch favorable alleles at the 2NS translocation, and two markers on the telomeric end of chromosome 3BS with grain yield evaluated in multiple environments, implying that selection for favorable alleles at these markers could help obtain higher grain yield and spot blotch resistance.

“Considering the persistent threat of spot blotch to resource-poor farmers in South Asia, further research and breeding efforts to improve genetic resistance to the disease, identify novel sources of resistance by screening different germplasm, and selecting for genomic regions with minor effects using selection tools like genomic selection is essential,” explained Philomin Juliana, Molecular Breeder and Quantitative Geneticist at CIMMYT.

Read the full study:
Genome-Wide Association Mapping Indicates Quantitative Genetic Control of Spot Blotch Resistance in Bread Wheat and the Favorable Effects of Some Spot Blotch Loci on Grain Yield

Cover photo: Researchers evaluate wheat for spot blotch at CIMMYT’s experimental station in Agua Fría, Jiutepec, Morelos state, Mexico. (Photo: Xinyao He and Pawan Singh/CIMMYT)

MARPLE reaches South Asia

Workshop participants stand for a group photo. (Photo: Danny Ward/John Innes Centre)
Workshop participants stand for a group photo. (Photo: Danny Ward/John Innes Centre)

On April 26–29, 2022, researchers from Nepal participated in a workshop on the use of MARPLE Diagnostics, the most advanced genetic testing methodology for strain-level diagnostics of the deadly wheat yellow rust fungus. Scientists from the International Maize and Wheat Improvement Center (CIMMYT) and the John Innes Centre trained 21 researchers from the Nepal Agricultural Research Council (NARC) and one from iDE. The workshop took place at NARC’s National Plant Pathology Research Centre in Khumaltar, outside the capital Kathmandu.

“The need for new diagnostic technologies like MARPLE and the critical timing of the workshop was highlighted by the severe yellow rust outbreak observed this season in the western areas of Nepal,” commented Dave Hodson, Senior Scientist at CIMMYT and project co-lead. “Having national capacity to detect the increasing threats from yellow rust using MARPLE will be an important tool to help combat wheat rusts in Nepal”.

The yellow rust fungus can cause grain yield losses of 30–80 % to wheat, Nepal’s third most important food crop.

Current diagnostic methods for wheat rust used in Nepal are slow, typically taking months between collecting the sample and final strain identification. They are also costly and reliant on sending samples overseas to highly specialized labs for analysis.

MARPLE (Mobile and Real-time PLant disEase) Diagnostics is the first method to place strain-level genetic diagnostics capability directly into the hands of Nepali researchers, generating data in-country in near-real time, for immediate integration into early warning systems and disease management decisions.

“This is a fantastic opportunity to bring the latest innovations in plant disease diagnostics for the wheat rust pathogens to where they are needed most, in the hands of researchers in the field working tirelessly to combat these devastating diseases,” commented Diane Saunders, Group Leader at the John Innes Centre and project co-lead.

Diane Saunders (left), Group Leader at the John Innes Centre and project co-lead, observes workshop participants during the use of MARPLE. (Photo: Danny Ward/John Innes Centre)
Diane Saunders (left), Group Leader at the John Innes Centre and project co-lead, observes workshop participants during the use of MARPLE. (Photo: Danny Ward/John Innes Centre)

Suraj Baidya senior scientist and chief of the National Plant Pathology Research Centre at NARC noted the worrying recent geographical expansion of yellow rust in Nepal. “Due to global warming, yellow rust has now moved into the plain and river basin area likely due to evolution of heat tolerant pathotypes. MARPLE Diagnostics now gives us the rapid diagnostics needed to help identify and manage these changes in the rust pathogen population diversity,” he said.

The highly innovative MARPLE Diagnostics approach uses the hand-held MinION nanopore sequencer, built by Oxford Nanopore, to generate genetic data to type strains of the yellow rust fungus directly from field samples.

Beyond MARPLE Diagnostics, Saunders noted that “the workshop has also opened up exciting new possibilities for researchers in Nepal, by providing local genome-sequencing capacity that is currently absent.”

MARPLE (Mobile and Real-time PLant disEase) Diagnostics is a revolutionary mobile lab kit. It uses nanopore sequence technology to rapidly diagnose and monitor wheat rust in farmers’ fields. (Photo: Danny Ward/John Innes Centre)
MARPLE (Mobile and Real-time PLant disEase) Diagnostics is a revolutionary mobile lab kit. It uses nanopore sequence technology to rapidly diagnose and monitor wheat rust in farmers’ fields. (Photo: Danny Ward/John Innes Centre)

What’s next for MARPLE Diagnostics in Nepal?

Following the successful workshop, Nepali researchers will be supported by CIMMYT and the John Innes Centre to undertake MARPLE Diagnostics on field samples collected by NARC. “The current plan includes monitoring of yellow rust on the summer wheat crop planted at high hill areas and then early sampling in the 2022/23 wheat season,” Hodson noted.

“We were struck by the enthusiasm and dedication of our colleagues to embrace the potential offered by MARPLE Diagnostics. Looking forward, we are excited to continue working with our Nepali colleagues towards our united goal of embedding this methodology in their national surveillance program for wheat rusts,” Saunders remarked.

MARPLE Diagnostics is supported by the Feed the Future Innovation Lab for Current and Emerging Threats to Crops, funded by the United States Agency for International Development (USAID), the UK Biotechnology and Biological Sciences Research Council (BBSRC) Innovator of the Year Award, the CGIAR Big Data Platform Inspire Challenge, the Bill & Melinda Gates Foundation and the United Kingdom’s Foreign, Commonwealth and Development Office.

This article was originally published on the JIC website.

CGIAR Initiative to increase resilience, sustainability and competitiveness in Latin America and the Caribbean

(Photo: CIMMYT)
(Photo: CIMMYT)

Este artículo también está disponible en español.

With the participation of more than 30 researchers from four CGIAR Centers located in the Americas, a planning workshop for a new CGIAR Research Initiative, AgriLAC Resiliente, was held on April 4–6, 2022. Its purpose was to define the implementation of activities to improve the livelihoods of producers in Latin America, with the support of national governments, the private sector, civil society, and CGIAR’s regional and global funders, and partners.

“This workshop is the first face-to-face planning meeting aimed at defining, in a joined-up manner and map in hand, how the teams across Centers in the region will complement each other, taking advantage of the path that each Center has taken in Latin America, but this time based on the advantage of reaching the territories not as four independent Centers, but as one CGIAR team,” says Deissy Martínez Barón, leader of the Initiative from the Alliance of Bioversity International and CIAT.

AgriLAC Resiliente is an Initiative co-designed to transform food systems in Latin America and the Caribbean. It aims to increase resilience, ecosystem services and the competitiveness of agrifood innovation systems in the region. Through this Initiative, CGIAR is committed to providing a regional structure that enhances its effectiveness and responds better to national and regional priorities, needs and demands.

This Initiative is one of a number that the CGIAR has in Latin America and the Caribbean and consists of five research components:

  1. Climate and nutrition that seeks to use collaborative innovations for climate-resilient and nutritious agrifood systems;
  2. Digital agriculture through the use of digital and inclusive tools for the creation of actionable knowledge;
  3. Competitiveness with low emissions, focused on agroecosystems, landscapes and value chains, low in sustainable emissions;
  4. Innovation and scaling with the Innova-Hubs network for agrifood innovations and their scaling up;
  5. Science for timely decision making and the establishment of policies, institutions and investments in resilient, competitive and low-emission agrifood systems.

The regional character of these CGIAR Initiatives and of the teams of researchers who make them a reality in the territories with the producers, was prominent in the minds of the leadership that also participated in this workshop. Martin Kropff, Global Director, Resilient Agrifood Systems, CGIAR; Joaquín Lozano, Regional Director, Latin America and the Caribbean, CGIAR; Óscar Ortiz, Acting Director General of the International Potato Center; Jesús Quintana, Manager for the Americas of the Alliance of Bioversity International and CIAT; and Bram Govaerts, Director General of the International Maize and Wheat Improvement Center (CIMMYT), all stated the importance of CGIAR being central to every discussion in which the teams are co-constructing a greater consensus on what AgriLAC Resliente is, what it wants to achieve, the approach it will use, and the goals it aims to achieve through synergies among its five components.

Acting as an integrated organization is also an opportunity for CGIAR to leverage co-developed solutions and solve local challenges in the global South related to climate change and agrifood systems transformation. “Building the new CGIAR involves tons of collaboration and coordination. In this AgriLAC Resiliente workshop, we have had a dialogue full of energy focused on achieving real impact” highlighted Bram Govaerts. He continued, “this is an occasion to strengthen teamwork around this CGIAR Initiative in which the Integrated Agrifood System Initiative approach will be applied in the Latin American region, which is a very interconnected region” he pointed out.

One of the main results of this workshop is an opportunity to carry out the integration of the CGIAR teams in the implementation of the AgriLAC Resiliente Initiative, with applied science and the decisive role of the partners at each point of the region, as mechanisms for change.

In 2022, the research teams will begin to lay the groundwork for implementing the Initiative’s integrative approach to strengthen the innovations to be co-developed with partners and collaborators in the Latin American region, that encompass the interconnected nature of the global South.

Learn more about the Initiative:
AgriLAC Resiliente: Resilient Agrifood Innovation Systems in Latin America and the Caribbean

This article, authored by the AgriLAC Resiliente team, was originally published on CGIAR.org.