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Gridded crop modeling to simulate impacts of climate change and adaptation benefits in ACASA

Global temperatures are projected to warm between 1.5-2 degrees Celsius by the year 2050, and 2-4 degrees Celsius by 2100. This is likely to change precipitation patterns, which will impact crop yields, water availability, food security, and agricultural resilience.

To prepare for these challenges, Atlas of Climate Adaptation in South Asian Agriculture (ACASA) uses process-based simulation models that can predict crop growth, development, and yield in order to understand the response of crops to climate change. Models such as Decision Support System for Agrotechnology Transfer (DSSAT), InfoCrop, and Agricultural Production Systems Simulator (APSIM) facilitate the field scale study of the biophysical and biochemical processes of crops under various environmental conditions, revealing how they are affected by changing weather patterns.

The ACASA team, along with experts from Columbia University and the University of Florida, met for a three-day workshop in January 2024 to boost the work on spatial crop modeling. The aim was to design a modeling protocol through a hands-on demonstration on high-performance computers. When scientifically executed, gridded spatial crop modeling–even though complex and data-intensive–can be a great way to frame adaptation and mitigation strategies for improving food security, which is one of ACASA’s goals.

ACASA’s Spatial Crop Modelling Group meets in Colombo, Sri Lanka, January 2024. (Photo: CIMMYT)

Decisions on data

The group decided to use DSSAT, APSIM, and InfoCrop for simulating the impact of climatic risks on crops such as rice, wheat, maize, sorghum, millet, pigeon pea, chickpea, groundnut, soybean, mustard, potato, cotton, and more. They chose harmonized protocols across all three models with standard inputs, such as conducting simulations at 0.05 degrees. The model input data about weather, soil, crop varietal coefficients, and crop management are being collected and processed for model input formats at 5 kilometer (km) spatial resolution.

A Python version called DSSAT-Pythia is now available to accelerate spatial and gridded applications. The programming for implementing InfoCrop on the Pythia platform is in progress. InfoCrop has been proven in India for past yield estimations, climate change spatial impact, and adaptation assessments for 12 crops.

For other crucial modeling components, a work plan was created including developing regional crop masks, crop zones based on mega-commodity environments as defined by CGIAR, production systems, crop calendars, and irrigated areas by crop. Genetic coefficients will then be calculated from measured past values and recent benchmark data of varietal units.

With this information, several adaptation options will be simulated, including changes in planting dates, stress-tolerant varieties, irrigation, and nitrogen fertilizer (quantity, methods, and technology), residue/mulching, and conservation tillage. The team will evaluate impact and adaptation benefits on yields, water, and nitrogen-use efficiency based on the reported percentage change from the baseline data.

As the project progresses, this work will make strides towards realizing food security for the planet and increasing the resilience of smallholder farming practices.

Blog written by Anooja Thomas, University of Florida; Apurbo K Chaki, BARI, Bangladesh; Gerrit Hoogenboom, University of Florida; S Naresh Kumar, ICAR-IARI, India

Alison Laing

Alison Laing is the CIMMYT lead for CSISA India, and leads bilateral and Initiative-funded projects in South and Southeast Asia. She works with farmers and researchers in South and Southeast Asia to sustainably improve cropping and farming system productivity, profitability and resilience.

Alison firmly believes in participatory, multi-disciplinary research and in combining practical field-trial based research with robust modelling to examine likely long-term outcomes of different management approaches.

Harshit Rajan

Harshit Rajan is the GIS Specialist in the SAS program at CIMMYT. His role revolves around geospatial activities, primarily centered around his roles within CSISA and SIS. Within the confines of CIMMYT, his professional pursuits are firmly directed toward two critical areas: Drainage class mapping and Digital Soil Mapping, both of which are augmented by cutting-edge machine-learning techniques.

 

 

Bhavani Pinjarla

Dr. Bhavani P is the Geospatial Analyst in the Sustainable Agrifood Systems program at CIMMYT. She obtained a Ph.D. degree from the University of Hyderabad, Hyderabad on the research topic “Spatio-temporal Assessment of Agricultural Performance and its Drought Vulnerability using Long-term Satellite and Climate Data”.

Dr. Bhavani P. provides solutions to farmers (at various scales – farmers to policy level) using remote sensing and geoprocessing. She acquired contemporary professional knowledge, climate data processing, machine learning techniques for image processing, R, and Google Earth Engine (GEE) with programming proficiency in JavaScript, and Python.

Umesh Singh Yadav

Umesh is streamlining the data management processes by implementing efficient data governance strategies and consistently improving data quality and accessibility for the Sustainable Agrifood Systems (SAS) program in India.

Umesh dashboard and report the development for visual representation of data that brings clarity to data-driven decisions and ensures data integrity with meticulous attention to detail that enables informed decision-making processes.

Harish Gandhi

Harish Gandhi is a Breeding Lead for Dryland Legumes and Cereals in CIMMYT’s Genetic Resources program in Kenya. He is a transformative plant breeding and genetics professional, with more than 15 years experience of driving genetic gains, building effective teams, and pioneering innovative research and development.

Building towards a climate-smart agriculture future through harnessing crop modeling

Participants of the crop modeling simulation workshop in Harare, Zimbabwe. (Photo: Tawanda Hove/CIMMYT)

Anticipating appropriate and timely responses to climate variability and change from an agricultural perspective requires forecasting and predictive capabilities. In Africa, climate-related risks and hazards continue to threaten food and nutrition security.

Crop simulation models are tools developed to assist farmers, agronomists and agro-meteorologists with insights on impacts to possible management decisions. Such tools are enablers for taking an appropriate course of action where complexity exists relating to both crop and livestock production. For example, a new variety can be introduced to Zimbabwe, but its performance will differ depending on the agroecological zones of the country and the respective treatments a farmer may apply. Applying modeling tools to assess its performance can predict yield differences and facilitate the generation of recommendations for which region is most suited to the variety, water use efficiency, and crop combinations.

Earlier this month, the International Maize and Wheat Improvement Center (CIMMYT) hosted a crop modeling simulation workshop with delegates from various African countries in Harare, Zimbabwe.

“The CGIAR Initiatives of Excellence in Agronomy (EiA) and Sustainable Intensification of Mixed Farming Systems (SI-MFS) have recognized the need to enhance modeling capacity in Africa to allow African scientists to lead in solving challenges within agricultural systems,” said CIMMYT crop scientist and coordinator of the workshop, Vimbayi Grace Petrova Chimonyo.

The workshop was facilitated by renowned global crop modeling experts to provide critical coaching support to upcoming modelers. These experts included Sue Walker, a professor at the University of the Free State, Tafadzwa Mabhaudhi, a professor at the International Water Management Institute (IWMI), KPC Rao, a lead scientist at the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Dirk Raes (KU Leuven), Diego Peqeuno (CIMMYT)  and Siyabusa Mukuhlani from the International Institute of Tropical Agriculture (IITA).

Crop models are scientific presentations of statistical knowledge about how a crop will grow in interaction with its environment. They use mathematical equations representing processes within a predefined plant system and the interactions between crops and the environment. The discipline is based on the premise that agricultural system environments are complex and not homogenous. Crop models enable decision-makers to make data-driven decisions by simulating possible outcomes to changes in a system and the configuration of production systems.

“It is quite apparent that modeling skills are scarce on the African continent. This workshop is a step toward consolidating existing capacities on the continent. If we are going to be able to close the already existing food deficit gap on the continent and meet the food requirements needed by 2050, with an estimated global population of nine billion, then we need to take modeling seriously,” said Chimonyo in her opening address at the workshop.

Due to the lack of crop modeling expertise in African states, there is a gap in capacity to build relevant crop advisory tools for farmers at a local level. This leads to poor policy formulation as decisions are based on a high degree of generalizations.

“In this modern era, we need advisories that are context specific. For example, just because a maize variety achieved a certain yield in one context doesn’t mean the same variety will achieve the same yields even if the rainfall patterns are the same. Other factors come into play, such as the soil type, temperature and other related aspects affecting the yield. Crop modeling affords advisory managers some specifications necessary to achieve high yields in different environments,” said Walker.

Vimbayi Chimonyo from CIMMYT making opening remarks at the workshop. (Photo: Tawanda Hove/CIMMYT)

Speakers at the workshop focused on three models, APSIM, AquaCrop and DSSAT, and participants had the opportunity to take part in activities and ask questions face-to-face. The workshop also covered key modeling aspects such as the minimum data requirements needed to run a model, calibration and validation of models, confidence testing of results, the science involved in simulating phenological development and growth processes, water and nitrogen cycles, and the use of multi-modeling approaches.

The workshop was particularly useful for young scientists, according to Rao, allowing more experienced modelers to share their expertise. “With such an interactive platform, experienced modelers like me can demonstrate multi-modeling approaches.”

Rao presented on two main approaches. The first involved the application of different simulation models to simulate one component of a system such as crops. The second simulated the complete system by integrating various models, such as crops, livestock, and economic models, providing an opportunity to understand the synergies and trade-offs between different components of the whole farm.

Participants at the workshop expressed their satisfaction with the training provided and left with practical knowledge that they could apply in their work both in the field and in the lab.

“When I first arrived, I knew very little about modeling, but as the workshop progressed, my confidence in applying models increased. I intend to immediately apply this knowledge for the forthcoming season such that we can start making impactful contributions to the country’s food and nutrition security status,” said Birhan Abdulkadir Indris, a research officer at CIMMYT.

“I am leaving this workshop with the confidence that I will advise farmers in my circle of influence with services tailored to their needs. I have learned that crop modeling can be used for many purposes and that different models address different issues,” said Connie Madembo, a research technician at CIMMYT. “I intend to teach other fellow PhD students at the University of Zimbabwe the same things I have learnt here. As a country, we need to be at the forefront of using these models, considering Zimbabwe’s high weather variability.”

As a way forward, the trained scientists were encouraged to apply the modeling skills they had gained to address short-term problems such as yield gaps and water use efficiency and long-term challenges such as the local impacts of climate change.

“While more capacity training is required, starting somewhere is better than never starting,” said Mabhaudi.

Adapting growing seasons to climate change can boost yields of world’s staple crops

Rising global temperatures due to climate change are changing the growth cycles of crops worldwide. Recent records from Europe show that wild and cultivated plants are growing earlier and faster due to increased temperatures.

Farmers also influence the timing of crops and tend to grow their crops when weather conditions are more favorable. With these periods shifting due to climate change, sowing calendars are changing over time.

Over thousands of years of domesticating and then breeding crops, humans have also managed to artificially change how crop varieties respond to both temperature and day length, and in turn have been able to expand the area where crop species can be grown. Farmers can now choose varieties that mature at different rates and adapt them to their environment.

Including farmers’ decisions on when to grow crops and which varieties to cultivate are vital ingredients for understanding how climate change is impacting staple crops around the world and how adaptation might offset the negative effects.

In a ground-breaking study, a team of researchers from the Potsdam Institute for Climate Impact Research (PIK), the Technical University of Munich and the International Maize and Wheat Improvement Center (CIMMYT) investigated how farmers’ management decisions affect estimates of future global crop yields under climate change.

“For long time, the parametrization of global crop models regarding crop timing and phenology has been a challenge,” said Sara Minoli, first author of the study. “The publication of global calendars of sowing and harvest have allowed advancements in global-scale crop model and more accurate yield simulations, yet there is a knowledge gap on how crop calendars could evolve under climate change. If we want to study the future of agricultural production, we need models that can simulate not only crop growth, but also farmers’ management decisions.”

Using computer simulations and process-based models, the team projected the sowing and maturity calendars for five staple crops, maize, wheat, rice, sorghum and soybean, adapted to a historical climate period (1986–2005) and two future periods (2060–2079 and 2080–2099). The team then compared the crop growing periods and their corresponding yields under three scenarios: no adaptation, where farmers continue with historical sowing dates and varieties; timely adaptation, where farmers adapt sowing dates and varieties in response to changing climate; and delayed adaptation, where farmers delay changing their sowing dates and varieties by 20 years.

The results of the study, published last year in Nature Communications, revealed that sowing dates driven by temperature will have larger shifts than those driven by precipitation. The researchers found that adaptation could increase crop yields by 12 percent, compared to non-adaptation, with maize and rice showing the highest potential for increased crop yields at 17 percent. This in turn would reduce the negative impacts of climate change and increase the fertilization effect of increased levels of carbon dioxide (CO2) in the atmosphere.

They also found that later-maturing crop varieties will be needed in the future, especially at higher latitudes.

“Our findings indicate that there is space for maintaining and increasing crop productivity, even under the threat of climate change. Unfortunately, shifting sowing dates – a very low-cost measure – is not sufficient, and needs to be complemented by the adaptation of the entire cropping cycle through the use of different cultivars,” said Minoli.

Another important aspect of this study, according to Anton Urfels, CIMMYT systems agronomist and co-author of the study, is that it bridges the GxMxE (Gene-Management-Environment) spectrum by using crop simulations as an interdisciplinary tool to evaluate complex interactions across scientific domains.

“Although the modeled crops do not represent real cultivars, the results provide information for breeders regarding crop growth durations (i.e. the need for longer duration varieties) needed in the future as well as agronomic information regarding planting and harvesting times across key global climatic regimes. More such interdisciplinary studies will be needed to address the complex challenges we face for transitioning our food systems to more sustainable and resilient ones,” said Urfels.

Read the study: Global crop yields can be lifted by timely adaptation of growing periods to climate change

Cover photo: Work underway at the International Maize and Wheat Improvement Center in Zimbabwe (CIMMYT), is seeking to ensure the widespread hunger in the country caused by the 2015/6 drought is not repeated, by breeding a heat and drought tolerant maize variety that can still grow in extreme temperatures. CIMMYT maize breeders used climate models from the CGIAR Research Program on Climate Change, Agriculture and Food Security (CCAFS) to inform breeding decisions. (Photo: L. Sharma/Marchmont Communications)

David Omar Gonzalez Dieguez

David Omar Gonzalez Dieguez is a Post-Doctoral Fellow – Molecular Pre-Breeder in the Global Wheat Program at CIMMYT. He leads the application and integration of molecular tools in research and pre-breeding activities in wheat physiology.

In the research context, Dieguez focuses on the genetic basis of physiological traits related to yield components and climate resilience for yield potential, heat, and drought adaptation by performing GWAS analyses for gene/marker/QTL discovery and establishing marker validation for pre-breeding and breeding application to assist stacking of complementary physiological and agronomic traits.

In the pre-breeding context, Dieguez conducts the application and integration of genomic-assisted breeding tools (i.e. MAS/MABC and GS) at appropriate stages of the pre-breeding pipeline to support pre-breeder’s decisions for selecting lines for yield potential and tolerance to heat and drought stress and for trait introgression.

Mekides Woldegiorgis Gardi

Mekides Woldegiorgis Gardi is a Post-Doctoral Fellow (System Agronomist – Crop Modelling) in the Sustainable Agrifood Systems (SAS) program in Ethiopia.

Carlos Alfredo Robles Zazueta

Carlos Alfredo Robles Zazueta is a Postdoctoral Fellow – Wheat Physiology in the Global Wheat Program at CIMMYT.

His research interests are focused in understanding the physiological basis of yield improvement by studying physiological traits such as photosynthesis, stomatal conductance, biomass accumulation, resource use efficiency, all of this using conventional and high-throughput phenotyping methods.

Lokesh Chaudhary

Lokesh Chaudhary is an agronomist with expertise in seed physiology, crop modelling, precision agriculture and GIS GNSS. He is currently learning about drone piloting, data collection and processing.

At CIMMYT, Chaudhary works on resilient climate agriculture, under which technology transfer is done. Expertise in agronomy, seed and machinery is required and used extensively. He supports in the execution of farmers participatory and on-station demonstrations/research trials on climate-resilient agricultural practices, monitors day-to-day field activities (irrigation, fertilizer, herbicide, insecticide, etc.) and conducts data collection of the farmers participatory/research trials.

Gatien Falconnier

Gatien Falconnier is a systems agronomist interested in the impact of sustainable agricultural intensification on food security and income, in the smallholder context of sub-Saharan Africa. His work combines on-farm and on-station experimentation, crop and farm modelling, to explore scenarios of change in farmers practices, with current and future climate.

Scientist urges upgrades to monitor groundwater use for agriculture in low-income countries

Data collector reading data from offline groundwater level logger – one of the three tested monitoring technologies. (Credit: Subash Adhikari/CIMMYT)

Based on a pilot study regarding the feasibility and cost effectiveness of several groundwater monitoring approaches for agriculture in Nepal’s Terai region, a water and food security specialist who led the research has recommended the use of phone-based systems.

Speaking to diverse experts at the recent World Water Week 2022 in Stockholm, Sweden, Anton Urfels, a systems agronomist at the International Maize and Wheat Improvement Center (CIMMYT), said that manual monitoring with phone-based data uploading is relatively low-cost and effective and could be scaled up across the Terai.

“One alternate monitoring approach studied — online data uploading — has substantially lower staff time requirements and technology costs and higher temporal resolution than phone-based monitoring, but does not provide real-time data and entails high technical skills, capital costs, and risks of theft and damage,” said Urfels in his presentation, ‘Upgrading Groundwater Monitoring Networks in Low-Income Countries’.

Urfels and partners also developed a prototype of an open-source groundwater monitoring dashboard to engage stakeholders, help translate raw data into actionable information, and detect water depletion trends.

Water has become a key part of food research and innovation, critical for sustainable and ecological intensification in agriculture, according to the scientist.

“Collecting groundwater data is difficult and the technology for monitoring is unreliable, which impairs effective modeling, decision-making, and learning,” Urfels explained. “Like other countries in the region, Nepal is increasing its agricultural groundwater consumption, particularly through private investment in irrigation wells and pumps that open irrigation to more farmers. This and climate change have altered groundwater recharge rates and availability, but national data on these trends are incomplete.”

An extensive lowland region bordering India and comprising one-fifth of the nation’s territory, the Terai is Nepal’s breadbasket.

Held yearly since 1991, World Water Week attracts a diverse mix of participants from many professions to develop solutions for water-related challenges including poverty, the climate crisis, and biodiversity loss. The 2022 theme was “Seeing the Unseen: The Value of Water”.

“I’d recommend more pilot studies on phone-based groundwater monitoring for other areas of Nepal, such as the Mid-hill districts,” Urfels said. “We also need to fine-tune and expand the system dashboard and build cross-sectoral coordination to recognize and take into account groundwater’s actual economic value.”

Urfels said the Nepal Ministry of Energy, Water Resources and Irrigation has requested the nationwide scale-out of a digital monitoring system, and CIMMYT and Nepal experts will support this, as well as improving the system, which would be freely available for use and development by researchers and agencies outside of Nepal.

The research described was carried out under the Cereal Systems Initiative in South Asia (CSISA), which is funded by USAID and the Bill & Melinda Gates Foundation, and under the CGIAR integrated research initiative, Transforming Agrifood Systems in South Asia (TAFSSA).

Weather data and crop disease simulations can power predictions of wheat blast outbreaks, new study shows

Cutting-edge models for crops and crop diseases, boosted by high-resolution climate datasets, could propel the development of early warning systems for wheat blast in Asia, helping to safeguard farmers’ grain supplies and livelihoods from this deadly and mysterious crop disease, according to a recent study by scientists at the International Maize and Wheat Improvement Center (CIMMYT).

Originally from the Americas, wheat blast shocked farmers and experts in 2016 by striking 15,000 hectares of Bangladesh wheat fields, laying waste to a third of the crops. The complex interactions of wheat and the fungus, Magnaporthe oryzae pathotype Triticum (MoT), which causes blast, are not fully understood. Few current wheat varieties carry genetic resistance to it and fungicides only partly control it. Warm temperatures and high humidity favor MoT spore production and spores can fly far on winds and high-altitude currents.

Mean potential wheat blast disease infections (NPI) across Asia, based on disease and crop infection model simulations using air temperature and humidity data from 1980-2019. Black dots represent wheat growing areas with presumably unsuitable climates for wheat blast. The x and y axes indicate longitude and latitude.

“Using a wheat blast infection model with data for Asia air temperatures and humidity during 1980-2019, we found high potential for blast on wheat crops in Bangladesh, Myanmar, and areas of India, whereas the cooler and drier weather in countries such as Afghanistan and Pakistan appear to render their wheat crops as unlikely for MoT establishment,” said Carlo Montes, a CIMMYT agricultural climatologist and first author of the paper, published in the International Journal of Biometeorology. “Our findings and approach are directly relevant for work to strengthen monitoring and forecasting tools for wheat blast and other crop diseases, as well as building farmers’ and agronomists’ disease control capacity.”

Montes emphasized the urgency of those efforts, noting that some 13 million hectares in South Asia are sown to wheat in rotation with rice and nearly all the region’s wheat varieties are susceptible to wheat blast.

Read the full study: Variable climate suitability for wheat blast (Magnaporthe oryzae pathotype Triticum) in Asia: Results from a continental‑scale modeling approach

Cover photo: Researchers take part in a wheat blast screening and surveillance course in Bangladesh. (Photo: CIMMYT/Tim Krupnik)