Location: Asia

As a fast growing region with increasing challenges for smallholder farmers, Asia is a key target region for CIMMYT. CIMMYT’s work stretches from Central Asia to southern China and incorporates system-wide approaches to improve wheat and maize productivity and deliver quality seed to areas with high rates of child malnutrition. Activities involve national and regional local organizations to facilitate greater adoption of new technologies by farmers and benefit from close partnerships with farmer associations and agricultural extension agents.

2022 Excellence in International Service Award

Written by Sarah McLaughlin on June 13, 2022. Posted in News.

Scientist Pablo D Olivera Firpo has been awarded the Excellence in International Service Award by Advancing the Science of Plant Pathology (APS) for outstanding contributions to plant pathology by APS members for countries other than their own.

Firpo was born in Montevideo, Uruguay, where he received a BSc degree as an agronomy engineer in 1997 from the University of the Republic, College of Agronomy. His PhD degree in 2008 was from the Department of Plant Pathology at the University of Minnesota (UMN). He began his career as a postdoctoral research associate with the Department of Plant Pathology and the USDA-ARS Cereal Disease Lab, and then became a research assistant professor in the Department of Plant Pathology at UMN in 2017.

Firpo has been a vital member in the global cereal rust pathology community and contributed substantially to the fight against Ug99 and other virulent wheat stem rust races that have re-emerged around the world and pose serious threats to food security. Firpo’s contributions are not only within the realm of research of great impact, but also include training 79 scientists and facilitating the establishment of a world-class research group in Ethiopia. He has worked to improve international germplasm screening in Ethiopia. As a postdoctoral research associate, Firpo’s first assignment was to search for new sources of resistance to Ug99 in durum wheat, used for pasta, and related tetraploid wheat lines. That project took him to Ethiopia, where an international Ug99-screening nursery for durum wheat was established at Debre Zeit Research Center. He worked closely with researchers from the Ethiopian Institute of Agricultural Research (EIAR) and the International Maize and Wheat Research Center (CIMMYT) to improve the methodologies for screening and to provide hands-on training to researchers managing the international screening nursery. During a period of 10 years (from 2009 to 2019), he traveled to Ethiopia 21 times to evaluate stem rust reactions of US and international durum wheat germplasm and completed the screening of the entire durum collection (more than 8,000 accessions) from the USDA National Small Grains Collection.

Firpo’s research on sources and genetics of stem rust resistance led to discoveries of valuable genetic resistance in durum and other relatives of wheat. These sources of resistance have provided the needed diversity to ensure the development and sustainability of durable stem rust resistance.

With frequent epidemics and severe yield losses caused by stem rust in eastern Africa, establishing a functional rust pathology laboratory to support international screening, as well as to monitor and detect new virulences in the pathogen population, became a high priority for the international wheat research community. Utilizing the onground opportunities in Ethiopia, Firpo and his colleagues at the CDL and UMN enthusiastically participated in building up the rust pathology lab at the Ambo Plant Protection Center of EIAR. Firpo traveled to Ambo 11 times to provide hands-on training to staff and to develop cereal rust protocols to suit local conditions. He worked closely with colleagues at CDL, EIAR, and CIMMYT to secure and upgrade facilities, equipment and supplies to a standard that ensures reliable rust work will be carried out. As a result, the rust pathology lab at the Ambo Center became the only laboratory in eastern Africa, and one of a handful in the world, that can conduct high-quality race analysis of wheat stem rust samples and provide vital and necessary support for breeding global wheat varieties for rust resistance. Currently, the laboratory is playing a critical role in the global surveillance of the stem rust pathogen and supports wheat breeding efforts led by EIAR, CIMMYT, and the USDA.

Firpo has been passionate in supporting capacity building of human resources in Ethiopia and elsewhere. He has been eager to share his knowledge whenever he encounters an opportunity to do so. In addition to the direct training of the staff at the Ambo Center, Firpo accepted invitations to provide training lectures and hands-on field- and greenhouse-based workshops on rust pathology at three research centers in Ethiopia. He prepared training materials, delivered a total of 12 lectures and 10 practical sessions in three Ethiopia national workshops in 2014, 2015, and 2017. These workshops enhanced human resource development and technical capacity in Ethiopia in cereal rust pathology; participants included a total of 64 junior scientists and technical staff from nationwide research centers. Beyond Ethiopia, he was responsible for developing and implementing a six-week training program in cereal rust prevention and control for international scientists. This training program, under the aegis of the Stakman-Borlaug Center for Sustainable Plant Health in the Department of Plant Pathology, University of Minnesota, provided an experiential learning opportunity for international scientists interested in acquiring knowledge and practical skills in all facets of working with cereal rusts. The program trained 15 rust pathologists and wheat scientists from Ethiopia, Kenya, Pakistan, Nepal, Bhutan, Georgia, and Kyrgyzstan, ranging from promising young scientists selected by the USDA as Borlaug Fellows to principal and senior scientists in their respective countries. Many of these trainees have become vital partners in the global surveillance network for cereal rusts.

Working in collaboration with CDL and international scientists, Firpo has been closely involved in global surveillance of the stem rust pathogen, spurred by monitoring the movements of, and detecting, new variants in the Ug99 race group. Since 2009, he and the team at the CDL have analyzed 2,500 stem rust samples from 22 countries, described over 35 new races, and identified significant virulence combinations that overcome stem rust resistance genes widely deployed in global wheat varieties. Among the most significant discoveries were the identification of active sexual populations of the stem rust pathogen in Kazakhstan, Georgia, Germany, and Spain that have unprecedented virulence and genetic diversities. More than 320 new virulent types (or races) were identified from these sexual populations. Evolution in these populations will present continued challenges to wheat breeding. Research in race analysis has provided valuable pathogen isolates that are used to evaluate breeding germplasm to select for resistant wheat varieties and to identify novel sources of stem rust resistance.

A shortage of farm workers is driving the serious consideration by farmers and policymakers to replace traditional, labor-intensive puddled rice cropping (shown here), which leads to sizable methane emissions and profligate use of irrigation water, with the practice of growing rice in non-flooded soils, using conservation agriculture and drip irrigation practices. (Photo: P. Wall/CIMMYT)

A climate-smart remodeling of South Asia’s rice-wheat cropping is urgent

Written by Mike Listman on June 3, 2022. Posted in Publications.

A climate change hotspot region that features both small-scale and intensive farming, South Asia epitomizes the crushing pressure on land and water resources from global agriculture to feed a populous, warming world. Continuous irrigated rice and wheat cropping across northern India, for example, is depleting and degrading soils, draining a major aquifer, and producing a steady draft of greenhouse gases.

Through decades-long Asian and global partnerships, the International Maize and Wheat Improvement Center (CIMMYT) has helped to study and promote resource-conserving, climate-smart solutions for South Asian agriculture. Innovations include more precise and efficient use of water and fertilizer, as well as conservation agriculture, which blends reduced or zero-tillage, use of crop residues or mulches as soil covers, and more diverse intercrops and rotations. Partners are recently exploring regenerative agriculture approaches — a suite of integrated farming and grazing practices to rebuild the organic matter and biodiversity of soils.

Along with their environmental benefits, these practices can significantly reduce farm expenses and maintain or boost crop yields. Their widespread adoption depends in part on enlightened policies and dedicated promotion and testing that directly involves farmers. We highlight below promising findings and policy directions from a collection of recent scientific studies by CIMMYT and partners.

Getting down in the dirt

A recent scientific review examines the potential of a suite of improved practices — reduced or zero-tillage with residue management, use of organic manure, the balanced and integrated application of plant nutrients, land levelling, and precise water and pest control — to capture and hold carbon in soils on smallholder farms in South Asia. Results show a potential 36% increase in organic carbon in upper soil layers, amounting to some 18 tons of carbon per hectare of land and, across crops and environments, potentially cutting methane emissions by 12%. Policies and programs are needed to encourage farmers to adopt such practices.

Another study on soil quality in India’s extensive breadbasket region found that conservation agriculture practices raised per-hectare wheat yields by nearly half a ton and soil quality indexes nearly a third, over those for conventional practices, as well as reducing greenhouse gas emissions by more than 60%.

Ten years of research in the Indo-Gangetic Plains involving rice-wheat-mungbean or maize-wheat-mungbean rotations with flooded versus subsoil drip irrigation showed an absence of earthworms — major contributors to soil health — in soils under farmers’ typical practices. However, large earthworm populations were present and active under climate-smart practices, leading to improved soil carbon sequestration, soil quality, and the availability of nutrients for plants.

The field of farmer Ram Shubagh Chaudhary, Pokhar Binda village, Maharajganj district, Uttar Pradesh, India, who has been testing zero tillage to sow wheat directly into the unplowed paddies and leaving crop residues, after rice harvest. Chaudhary is one of many farmer-partners in the Cereal Systems Initiative for South Asia (CSISA), led by CIMMYT. (Photo: P. Kosina/CIMMYT)

Rebooting marginal farms by design

Using the FarmDESIGN model to assess the realities of small-scale, marginal farmers in northwestern India (about 67% of the population) and redesign their current practices to boost farm profits, soil organic matter, and nutritional yields while reducing pesticide use, an international team of agricultural scientists demonstrated that integrating innovative cropping systems could help to improve farm performance and household livelihoods.

More than 19 gigatons of groundwater is extracted each year in northern India, much of this to flood the region’s puddled, transplanted rice crops. A recent experiment calibrated and validated the HYDRUS-2D model to simulate water dynamics for puddled rice and for rice sown in non-flooded soil using zero-tillage and watered with sub-surface drip irrigation. It was found that the yield of rice grown using the conservation agriculture practices and sub-surface drip irrigation was comparable to that of puddled, transplanted rice but required only half the irrigation water. Sub-surface drip irrigation also curtailed water losses from evapotranspiration and deep drainage, meaning this innovation coupled with conservation agriculture offers an ecologically viable alternative for sustainable rice production.

Given that yield gains through use of conservation agriculture in northern India are widespread but generally low, a nine-year study of rice-wheat cropping in the eastern Indo-Gangetic Plains applying the Environmental Policy Climate (EPIC) model, in this case combining data from long-term experiments with regionally gridded crop modeling, documented the need to tailor conservation agriculture flexibly to local circumstances, while building farmers’ capacity to test and adapt suitable conservation agriculture practices. The study found that rice-wheat productivity could increase as much as 38% under conservation agriculture, with optimal management.

Key partner organizations in this research include the following: Indian Council of Agricultural Research (ICAR); Central Soil Salinity Research Institute (CSSRI), Indian Agricultural Research Institute (IARI), Indian Institute of Farming Systems Research (IIFSR), Agriculture University, Kota; CCS Haryana Agricultural University, Hisar; Punjab Agricultural University, Ludhiana; Sri Karan Narendra Agriculture University, Jobner, Rajasthan; the Borlaug Institute for South Asia (BISA); the Trust for Advancement of Agricultural Sciences, Cornell University; Damanhour University, Damanhour, Egypt; UM6P, Ben Guerir, Morocco; the University of Aberdeen; the University of California, Davis; Wageningen University & Research; and IFDC.

Generous funding for the work cited comes from the Bill & Melinda Gates Foundation, The CGIAR Research Programs on Wheat Agri-Food Systems (WHEAT) and Climate Change, Agriculture and Food Security (CCAFS), supported by CGIAR Fund Donors and through bilateral funding agreements), The Indian Council of Agricultural Research (ICAR), and USAID.

Cover photo: A shortage of farm workers is driving the serious consideration by farmers and policymakers to replace traditional, labor-intensive puddled rice cropping (shown here), which leads to sizable methane emissions and profligate use of irrigation water, with the practice of growing rice in non-flooded soils, using conservation agriculture and drip irrigation practices. (Photo: P. Wall/CIMMYT)

Nitrogen-Efficient Wheat Production Systems in the Indo-Gangetic Plains through Biological Nitrification Inhibition (BNI) Technology

Written by Bea Ciordia on May 30, 2022. Posted in Uncategorized.

The Nitrogen-Efficient Wheat Production Systems in the Indo-Gangetic Plains through Biological Nitrification Inhibition (BNI) Technology project aims to raise awareness of the benefits of new nitrogen-efficient wheat production systems among stakeholders in India.

By introducing technologies that maintain crop yield and quality, even with a reduced amount of nitrogen fertilizer, this project will also lessen the footprint of food production systems and combat environmental degradation.

Rapid Point-of-Care Diagnostics for Wheat Rusts (MARPLE)

Written by Bea Ciordia on May 30, 2022. Posted in Uncategorized.

MARPLE (Mobile And Real-time PLant disEase) diagnostics is a new innovative approach for fungal crop pathogen diagnostics developed by Diane Saunders’s team at the John Innes Centre.

MARPLE is the first operational system in the world using nanopore sequencing for rapid diagnostics and surveillance of complex fungal pathogens in situ. Generating results in 48 hours of field sampling, this new digital diagnostic strategy is leading revolutionary changes in plant disease diagnostics. Rapid strain level diagnostics are essential to quickly find new emergent strains and guide appropriate control measures.

Through this project, CIMMYT will:

Deploy and scale MARPLE to priority geographies and diseases as part of the Current and Emerging Threats to Crops Innovation Lab led by Penn State University / PlantVillage and funded by USAID’s Feed the Future.
Build national partner capacity for advanced disease diagnostics. We will focus geographically on Ethiopia, Kenya and Nepal for deployment of wheat stripe and stem rust diagnostics, with possible expansion to Bangladesh and Zambia (wheat blast).
Integrate this new in-country diagnostic capacity with recently developed disease forecasting models and early warning systems. Already functional for wheat stripe rust, the project plans to expand MARPLE to incorporate wheat stem rust and wheat blast.

Bangladesh Integrated Pest Management Activity (IPMA)

Written by Bea Ciordia on May 30, 2022. Posted in Uncategorized.

The Bangladesh Integrated Pest Management Activity (IPMA) project aims to strengthen the capacity of agricultural stakeholders in Bangladesh by controlling and preventing the spread of current and emerging threats to ensure more efficient, profitable, and environmentally safe agricultural production and productivity.

Objectives

Increase the availability and affordability of integrated pest management measures for the prevention and spread of current and emerging threats
Strengthen the capacity of Bangladesh agricultural stakeholders, such as academia, financial institutions, government, judiciary, media, civil society, the private sector, and value chain actors, to implement integrated pest management measures
Enhance the adoption of integrated pest management by smallholder farmers to increase agricultural production and productivity, while reducing environmental hazards caused by indiscriminate use of pesticides

Managing Wheat Blast in Bangladesh

Written by Bea Ciordia on May 30, 2022. Posted in Uncategorized.

The Managing Wheat Blast in Bangladesh: Identification and Introgression of Wheat Blast Resistance for Rapid Varietal Development and Dissemination project aims to characterize novel sources of wheat blast resistance, identification, and molecular mapping of resistance loci/gene(s) and their introgression into varietal development pipelines for rapid dissemination of resistant varieties in Bangladesh.

Objectives

Validate the effects of genes Rmg1, Rmg8 and RmgGR119 in field experiments
Identify novel wheat blast resistant sources and generating the corresponding genetic materials for investigating the resistance Quantitative Trait Loci (QTL)/genes
Monitor the adoption of resistant varieties BARI Gom 33 and WMRI Gom 3 by women and men farmers to learn the drivers and obstacles that are involved in the process, to inform the design of a farmer-preferred product profile, and factors in impact pathway
Build the capacity of the Bangladesh Wheat and Maize Research Institute (BWMRI) to operate major infrastructure in Jashore and Dinajpur at the individual and institutional levels
Enhance collaboration between Bangladesh and other countries showing interest on wheat blast
Train young wheat researchers and breeders in Jashore Precision Phenotyping Platform (PPP)

Transforming Smallholder Food Systems in the Eastern Gangetic Plains (Rupantar)

Written by Bea Ciordia on May 30, 2022. Posted in Uncategorized.

The Transforming Smallholder Food Systems in the Eastern Gangetic Plains (Rupantar) project aims to define the processes and practices (technical options, scaling interventions, policy settings and implementation) that can be applied to achieve sustainable, efficient, diversified food systems at scale in the Eastern Gangetic Plains of Bangladesh, India and Nepal.

Home to 450 million people, this region has the world’s highest concentration of rural poverty and strong dependence on agriculture for food and livelihoods. Productivity remains low and diversification is limited due to poorly developed markets, sparse agricultural knowledge and service networks, inadequate development of available water resources, and low adoption of improved, sustainable production practices.

Rupantar builds on existing work and partnership networks to link research outputs and development goals through the demonstration of inclusive diversification pathways, definition of processes for scaling to the millions of smallholder farmers in the region, and generating a better understanding of the policies that support diversification.

Research objectives

Defining the processes and practices (technical options, scaling interventions, policy settings and implementation) that can be applied to achieve sustainable, efficient, diversified food systems at scale in the Eastern Gangetic Plains.
Understanding the context for diversification in the Eastern Gangetic Plains.
Defining and implementing diversification pathways using collaborative and inclusive approaches.
Deepening understanding of the trade-offs and synergies associated with diversification pathways.
Engaging and communicating with change-makers to ensure outputs are used and integrated into independent programs.

Project outcomes

Demonstrated pathways for equitable and sustainable diversified food systems in the EGP.
Improved evidence-based policies for planning and development programs that promote diversification.
Self-sustaining diversification pathways that are owned by local partners and promoted without ongoing project support.

Bipolaris sorokiniana, the fungus causing spot blotch in wheat. (Photo: Xinyao He and Pawan Singh/CIMMYT)

Two approaches better than one: identifying spot blotch resistance in wheat varieties

Written by Sarah Fernandes on May 30, 2022. Posted in Publications.

Spot blotch, a major biotic stress challenging bread wheat production is caused by the fungus Bipolaris sorokiniana. In a new study, scientists from the International Maize and Wheat Improvement Center (CIMMYT) evaluate genomic and index-based selection to select for spot blotch resistance quickly and accurately in wheat lines. The former approach facilitates selecting for spot blotch resistance, and the latter for spot blotch resistance, heading and plant height.

Genomic selection

The authors leveraged genotyping data and extensive spot blotch phenotyping data from Mexico and collaborating partners in Bangladesh and India to evaluate genomic selection, which is a promising genomic breeding strategy for spot blotch resistance. Using genomic selection for selecting lines that have not been phenotyped can reduce the breeding cycle time and cost, increase the selection intensity, and subsequently increase the rate of genetic gain.

Two scenarios were tested for predicting spot blotch: fixed effects model (less than 100 molecular markers associated with spot blotch) and genomic prediction (over 7,000 markers across the wheat genome). The clear winner was genomic prediction which was on average 177.6% more accurate than the fixed effects model, as spot blotch resistance in advanced CIMMYT wheat breeding lines is controlled by many genes of small effects.

“This finding applies to other spot blotch resistant loci too, as very few of them have shown big effects, and the advantage of genomic prediction over the fixed effects model is tremendous”, confirmed Xinyao He, Wheat Pathologist and Geneticist at CIMMYT.

The authors have also evaluated genomic prediction in different populations, including breeding lines and sister lines that share one or two parents.

Spot blotch susceptible wheat lines (left) and resistant lines. (Photo: Xinyao He and Pawan Singh/CIMMYT)

Index selection

One of the key problems faced by wheat breeders in selecting for spot blotch resistance is identifying lines that are genetically resistant to spot blotch versus those that escape and exhibit less disease by being late and tall. “The latter, unfortunately, is often the case in South Asia”, explained Pawan Singh, Head of Wheat Pathology at CIMMYT.

A potential solution to this problem is the use of selection indices that can make it easier for breeders to select individuals based on their ranking or predicted net genetic merit for multiple traits. Hence, this study reports the first successful evaluation of the linear phenotypic selection index and Eigen selection index method to simultaneously select for spot blotch resistance using the phenotype and genomic-estimated breeding values, heading and height.

This study demonstrates the prospects of integrating genomic selection and index-based selection with field based phenotypic selection for resistance in spot blotch in breeding programs.

Read the full study:
Genomic selection for spot blotch in bread wheat breeding panels, full-sibs and half-sibs and index-based selection for spot blotch, heading and plant height

Cover photo: Bipolaris sorokiniana, the fungus causing spot blotch in wheat. (Photo: Xinyao He and Pawan Singh/CIMMYT)

Wheat leaves showing symptoms of heat stress. (Photo: CIMMYT)

Wheat versus heat

Written by Rodrigo Ordóñez on May 20, 2022. Posted in Blogs.

Across South Asia, including major wheat-producing regions of India and Pakistan, temperature extremes are threatening wheat production. Heatwaves have been reported throughout the region, with a century record for early onset of extreme heat. Monthly average temperatures across India for March and April 2022 exceeded those recorded over the past 100 years.

Widely recognized as one of the major breadbaskets of the world, the Indo-Gangetic Plains region produces over 100 million tons of wheat annually, from 30 million hectares in Bangladesh, India, Nepal and Pakistan, primarily supporting large domestic demand.

The optimal window for wheat planting is the first half of November. The late onset of the 2021 summer monsoon delayed rice planting and its subsequent harvest in the fall. This had a knock-on effect, delaying wheat planting by one to two weeks and increasing the risk of late season heat stress in March and April. Record-high temperatures over 40⁰C were observed on several days in March 2022 in the Punjabs of India and Pakistan as well as in the state of Haryana, causing wheat to mature about two weeks earlier than usual.

In-season changes and effects

Prior to the onset of extreme heat, the weather in the current season in India was favorable, prompting the Government of India to predict a record-high wheat harvest of 111 million tons. The March heat stress was unexpected and appears to have had a significant effect on the wheat crop, advancing the harvest and likely reducing yields.

Departure of the normalized difference vegetation index (NDVI) during the period from March 22 to April 7 from the average of the previous five years. The NDVI is a measure of the leaf area and the greenness of vegetation. The yellow areas in the Punjabs of India and Pakistan, as well as in the state of Haryana, indicate that wheat matured earlier than normal due to elevated temperatures. Maximum temperatures reached 40⁰C on March 15 and remained at or above this level throughout the wheat harvesting period. (Map: Urs Schulthess/CIMMYT).

In the North-Western Plains, the major wheat basket of India, the area of late-sown wheat is likely to have been most affected even though many varieties carry heat tolerance. Data from CIMMYT’s on-farm experiments show a yield loss between 15 to 20% in that region. The states of Haryana and Punjab together contribute almost 30% of India’s total wheat production and notably contribute over 60% of the government’s buffer stocks. In the North-Eastern Plains, in the states of Bihar and Uttar Pradesh, around 40% of the wheat crop was normal or even early sown, escaping heat damage, whilst the remainder of late-sown wheat is likely to be impacted at a variable level, as most of the crop in this zone matures during the third and fourth week of March.

The Government of India has now revised wheat production estimates, with a reduction of 5.7%, to 105 million tons because of the early onset of summer.

India has reported record yields for the past 5 years, helping it to meet its goal of creating a reserve stock of 40 million tons of wheat after the 2021 harvest. It went into this harvest season with a stock of 19 million tons, and the country is in a good position to face this year’s yield loss.

In Pakistan, using satellite-based crop monitoring systems, the national space agency Space & Upper Atmosphere Research Commission (SPARCO) estimated wheat production reduction close to 10%: 26 million tons, compared to the production target of 29 million tons, for the 2021-22 season.

Rural and farming health impacts

Alongside a direct negative impact on agricultural productivity, the extreme temperatures in South Asia are likely to have negative health implications for the large rural labor force involved in wheat production. There is a growing body of evidence documenting declining health status in the agricultural workforce in areas of frequent temperature extremes. This also adds to the substantial human and environmental health concerns linked to residue burning.

We recommend that systematic research be urgently undertaken to characterize and understand the impacts of elevated temperatures on the health of field-based workers involved in wheat production. This is needed to develop a holistic strategy for adapting our global cropping systems to climate change.

Amplifying wheat supply risks

Combined with the wheat supply and price impacts of the current conflict in Ukraine and trade restrictions on Russian commodities, these further impacts on the global wheat supply are deeply troubling.

India had pledged to provide increased wheat exports to bolster global supplies, but this now looks uncertain given the necessity to safeguard domestic supplies. During the COVID-19 pandemic, the Indian government supported domestic food security by providing free rations — mainly wheat and rice — to 800 million people over several months. This type of support relies on the availability of large buffer stocks which appear stable, but may be reduced if grain production and subsequent procurement levels are lower than desired.

We are already seeing indications of reduced procurement by governments with market prices running higher than usual. However, although the Food Corporation of India has procured 27% less wheat grain in the first 20 days of the wheat procurement season compared to the same period last year, the Government of India is confident about securing sufficient wheat buffer stocks.

As with the COVID-19 pandemic and the war in Ukraine, it is likely that the most marked effects of both climate change and shortages of staple crops will hit the poorest and most vulnerable communities hardest.

A chain reaction of climate impacts

The real impacts of reduced wheat production due to extreme temperatures in South Asia demonstrate the realities of the climate emergency facing wheat and agricultural production. Direct impacts on farming community health must also be considered, as our agricultural workforce is pushed to new physical limits.

Anomalies, which are likely to become the new normal, can set off a chain reaction as seen here: the late onset of the summer monsoon caused delays in the sowing of rice and the subsequent wheat crop. The delayed wheat crop was hit by the unprecedented heatwave in mid- to late March at a relatively earlier stage, thus causing even more damage.

Preparing for wheat production tipping points

Urgent action is required to develop applied mitigation and adaptation strategies, as well as to plan for transition and tipping points when key staple crops such as wheat can no longer be grown in traditional production regions.

A strategic design process is needed, supported by crop and climate models, to develop and test packages of applied solutions for near-future climate changes. On-farm evidence from many farmers’ fields in Northwestern India indicates that bundled solutions — no-till direct seeding with surface retention of crop residues coupled with early seeding of adapted varieties of wheat with juvenile heat tolerance — can help to buffer terminal heat stress and limit yield losses.

Last but not least, breeding wheat for high-temperature tolerance will continue to be crucial for securing production. Strategic planning needs to also encompass the associated social, market and political elements which underpin equitable food supply and stability.

Download the pre-print:
Wheat vs. Heat: Current temperature extremes threaten wheat production in South Asia

Zhuang Qiaosheng (center) receives CIMMYT delegations in Beijing in 1997. (Photo: CIMMYT)

In memory of Zhuang Qiaosheng

Written by Rodrigo Ordóñez on May 16, 2022. Posted in News.

Zhuang Qiaosheng passed away in Beijing on May 8, 2022, at the age of 105. He was the most celebrated wheat breeder in China and enjoyed a high reputation in the international community.

As a leader of Wheat Breeding Program at Chinese Academy of Agricultural Sciences (CAAS), Zhuang developed 20 high-yielding and disease-resistant winter wheat varieties from 1947 to 1995, with a total planting area of 28 million hectares in achieving notable yield increase.

Zhuang served as a member of the Board of Trustees of the International Maize and Wheat Improvement Center (CIMMYT) from 1984 to 1987. He made great contributions to the collaboration between CIMMYT and China, including the opening of the CIMMYT office in China and the establishment of a shuttle breeding project for improving scab resistance.

Zhuang Qiaosheng (center) with Sanjaya Rajaram (left) and Tom Lumpkin in Beijing in 2017. (Photo: CIMMYT)

He did everything possible to enlarge CIMMYT activities in China before fully retiring in 2015.

He was a close friend to many CIMMYT staff, including the late distinguished scientist Sanjaya Rajaram. He also strongly recommended He Zhonghu, distinguished scientist and CIMMYT Country Representative for China, to work at CIMMYT as a postdoctoral fellow in 1990.

The CIMMYT community sends its deepest condolences to the Zhuang family.

Arpit Gaur

Written by Sarah McLaughlin on May 12, 2022. Posted in Uncategorized.

Arpit Gaur is a Assistant Research Associate working with CIMMYT’s Borlaug Institute for South Asia (BISA) in India.

Rajesh Reddy Illathur

Written by Sarah McLaughlin on May 12, 2022. Posted in Uncategorized.

Rajesh Reddy Illathur is a Hub Coordinator working with CIMMYT’s team in India.

Diane Saunders (left), Group Leader at the John Innes Centre and project co-lead, observes workshop participants during the use of MARPLE. (Photo: Danny Ward/John Innes Centre)

MARPLE reaches South Asia

Written by Rodrigo Ordóñez on May 12, 2022. Posted in News.

Workshop participants stand for a group photo. (Photo: Danny Ward/John Innes Centre)

On April 26–29, 2022, researchers from Nepal participated in a workshop on the use of MARPLE Diagnostics, the most advanced genetic testing methodology for strain-level diagnostics of the deadly wheat yellow rust fungus. Scientists from the International Maize and Wheat Improvement Center (CIMMYT) and the John Innes Centre trained 21 researchers from the Nepal Agricultural Research Council (NARC) and one from iDE. The workshop took place at NARC’s National Plant Pathology Research Centre in Khumaltar, outside the capital Kathmandu.

“The need for new diagnostic technologies like MARPLE and the critical timing of the workshop was highlighted by the severe yellow rust outbreak observed this season in the western areas of Nepal,” commented Dave Hodson, Senior Scientist at CIMMYT and project co-lead. “Having national capacity to detect the increasing threats from yellow rust using MARPLE will be an important tool to help combat wheat rusts in Nepal”.

The yellow rust fungus can cause grain yield losses of 30–80 % to wheat, Nepal’s third most important food crop.

Current diagnostic methods for wheat rust used in Nepal are slow, typically taking months between collecting the sample and final strain identification. They are also costly and reliant on sending samples overseas to highly specialized labs for analysis.

MARPLE (Mobile and Real-time PLant disEase) Diagnostics is the first method to place strain-level genetic diagnostics capability directly into the hands of Nepali researchers, generating data in-country in near-real time, for immediate integration into early warning systems and disease management decisions.

“This is a fantastic opportunity to bring the latest innovations in plant disease diagnostics for the wheat rust pathogens to where they are needed most, in the hands of researchers in the field working tirelessly to combat these devastating diseases,” commented Diane Saunders, Group Leader at the John Innes Centre and project co-lead.

Suraj Baidya senior scientist and chief of the National Plant Pathology Research Centre at NARC noted the worrying recent geographical expansion of yellow rust in Nepal. “Due to global warming, yellow rust has now moved into the plain and river basin area likely due to evolution of heat tolerant pathotypes. MARPLE Diagnostics now gives us the rapid diagnostics needed to help identify and manage these changes in the rust pathogen population diversity,” he said.

The highly innovative MARPLE Diagnostics approach uses the hand-held MinION nanopore sequencer, built by Oxford Nanopore, to generate genetic data to type strains of the yellow rust fungus directly from field samples.

Beyond MARPLE Diagnostics, Saunders noted that “the workshop has also opened up exciting new possibilities for researchers in Nepal, by providing local genome-sequencing capacity that is currently absent.”

MARPLE (Mobile and Real-time PLant disEase) Diagnostics is a revolutionary mobile lab kit. It uses nanopore sequence technology to rapidly diagnose and monitor wheat rust in farmers’ fields. (Photo: Danny Ward/John Innes Centre)

What’s next for MARPLE Diagnostics in Nepal?

Following the successful workshop, Nepali researchers will be supported by CIMMYT and the John Innes Centre to undertake MARPLE Diagnostics on field samples collected by NARC. “The current plan includes monitoring of yellow rust on the summer wheat crop planted at high hill areas and then early sampling in the 2022/23 wheat season,” Hodson noted.

“We were struck by the enthusiasm and dedication of our colleagues to embrace the potential offered by MARPLE Diagnostics. Looking forward, we are excited to continue working with our Nepali colleagues towards our united goal of embedding this methodology in their national surveillance program for wheat rusts,” Saunders remarked.

MARPLE Diagnostics is supported by the Feed the Future Innovation Lab for Current and Emerging Threats to Crops, funded by the United States Agency for International Development (USAID), the UK Biotechnology and Biological Sciences Research Council (BBSRC) Innovator of the Year Award, the CGIAR Big Data Platform Inspire Challenge, the Bill & Melinda Gates Foundation and the United Kingdom’s Foreign, Commonwealth and Development Office.

This article was originally published on the JIC website.

Stripe rust, also known as yellow rust, on wheat with droplets of rain. (Photo: A. Yaqup/CIMMYT)

Protecting plant health for food and nutritional security

Written by Rodrigo Ordóñez on May 11, 2022. Posted in Blogs.

Robust and resilient agrifood systems begin with healthy crops. Without healthy crops the food security and livelihoods of millions of resource-constrained smallholder famers in low- and middle-income countries would be in jeopardy. Yet, climate change and globalization are exacerbating the occurrence and spread of devastating insect-pests and pathogens.

Each year, plant diseases cost the global economy an estimated $220 billion — and invasive insect-pests at least $70 billion more. In addition, mycotoxins such as aflatoxins pose serious threats to the health and wellbeing of consumers. Consumption of mycotoxin-contaminated food can cause acute illness, and has been associated with increased risk of certain cancers and immune deficiency syndromes.

Effective plant health management requires holistic approaches that strengthen global and local surveillance and monitoring capacities, and mitigate negative impacts through rapid, robust responses to outbreaks with ecologically friendly, socially-inclusive and sustainable management approaches.

Over the decades, CGIAR has built a strong foundation for fostering holistic plant health protection efforts through its global network of Germplasm Health Units, as well as pathbreaking rapid-response efforts to novel transboundary threats to several important crops, including maize, wheat, rice, bananas, cassava, potatoes and grain legumes.

On May 12, 2022, CGIAR is launching the Plant Health and Rapid Response to Protect Food Security and Livelihoods Initiative (Plant Health Initiative). It presents a unified and transdisciplinary strategy to protect key crops — including cereals, legumes, roots, tubers, bananas and vegetables — from devastating pests and diseases, as well as mycotoxin contamination. CGIAR Centers will pursue this critical work together with national, regional and international partner institutions engaged in plant health management.

A comprehensive strategy

Prevention. When and where possible, prevention is always preferable to racing to find a cure. Reactive approaches, followed by most institutions and countries, generally focus on containment and management actions after a pest outbreak, especially pesticide use. These approaches may have paid off in the short- and medium-term, but they are not sustainable long-term. It has become imperative to take proactive actions on transboundary pest management through globally coordinated surveillance, diagnostics and deployment of plant health solutions, as well as dynamic communications and data sharing.

To this end, under this Initiative CGIAR will produce a diagnostics and surveillance toolbox. It will include low-cost and robust assays, genomics- and bioinformatics-based tools for pathogen diagnosis and diversity assessment, as well as information and communications technologies for real-time data collection and crowdsourcing. This will be complemented by the development of interoperable databases, epidemiological and risk assessment models, and evidence-based guidance frameworks for prioritizing biosecurity measures and rapid response efforts to high-risk insect-pests and diseases.

Integrated pest management strategies have been key in dealing with fall armyworm in Africa and Asia. (Photo: B.M. Prasanna/CIMMYT)

Adoption of integrated approaches. The goal of integrated pest and disease management is to economically suppress pest populations using techniques that support healthy crops. An effective management strategy will judiciously use an array of appropriate approaches, including clean seed systems, host-plant resistance, biological control, cultural control and the use of environmentally safer pesticides to protect crops from economic injury without adversely impacting the environment.

Through the Plant Health Initiative, CGIAR will promote system-based solutions using ecofriendly integrated pest and disease management innovation packages to effectively mitigate the impact of major insect-pests and diseases affecting crop plants. It will also implement innovative pre- and post-harvest mycotoxin management tools and processes.

Integrating people’s mindsets. The lack of gender and social perspectives in plant health surveillance, technology development, access to extension services and impact evaluation is a major challenge in plant health management. To address this, CGIAR will prioritize interdisciplinary data collection and impact evaluation methods to identify context-specific social and gender related constraints, opportunities and needs, as well as generate evidence-based recommendations for policy makers and stakeholders.

Interface with global and regional Initiatives. The Plant Health Initiative will build on the critical, often pioneering work of CGIAR. It will also work closely with other CGIAR global initiatives — including Accelerated Breeding, Seed Equal, Excellence in Agronomy and Harnessing Equality for Resilience in Agrifood Systems — and Regional Integrated Initiatives. Together, this network will help support CGIAR’s work towards developing and deploying improved varieties with insect-pest and disease resistance, coupled with context-sensitive, sustainable agronomic practices, in a gender- and socially-inclusive manner.

Targeting localized priorities with strategic partnerships

Effective plant health monitoring and rapid response efforts rely on the quality of cooperation and communication among relevant partner institutions. In this Initiative, CGIAR places special emphasis on developing and strengthening regional and international networks, and building the capacity of local institutions. It will enable globally and regionally coordinated responses by low- and middle-income countries to existing and emerging biotic threats.

To this end, CGIAR will work closely with an array of stakeholders, including national plant protection organizations, national agricultural research and extension systems, advanced research institutions, academia, private sector, and phytosanitary coordination networks.

The geographic focus of interventions under this Initiative will be primarily low- and middle-income countries in Latin America, South and Southeast Asia, and sub-Saharan Africa.

Coupled with CGIAR’s commitment to engaging, mobilizing and empowering stakeholders at various scales across the globe, the Plant Health Initiative represents an enormous step towards integrating people’s mindsets, capacities and needs towards holistic and sustainable plant health management. It will ultimately protect the food and nutritional security and livelihoods of millions of smallholders and their families.

Brown and green fields. (Photo: Elizabeth Lies/Unsplash)

Q&A: Regenerative agriculture for soil health

Written by Madeline Dahm on May 9, 2022. Posted in Features.

South Asia was the epicenter of the Green Revolution, a historic era of agricultural innovation that fed billions of people on the brink of famine.

Yet despite the indisputably positive nutritional and developmental impacts of the Green Revolution of the 1960s, the era of innovation also led to the widespread use of farming practices—like intensive tilling, monoculture, removal and burning of crop residues, and over-use of synthetic fertilizer—that have a deleterious effect on the soil and cause off-site ecological harm. Excess pumping of irrigation water over decades has dried out the region’s chief aquifer.

South Asia’s woes illustrate the environmental costs of intensive food production to feed our densely-populated planet. Currently, one billion hectares of land worldwide suffers from degraded soils.

The International Maize and Wheat Improvement Center (CIMMYT) works with two of the world’s most widely cultivated and consumed cereal crops. To grow enough of these staple foods to feed the world, a second Green Revolution is needed: one that avoids the mistakes of the past, regenerates degraded land and reboots biodiversity in farm areas.

M.L. Jat, a CIMMYT Principal Scientist, has spent 20 years studying and promoting sustainable agricultural practices for maize- and wheat-based farming systems. In the following Q&A, Jat tells us about regenerative agriculture: integrated farming and grazing practices intended to rebuild soil organic matter and restore degraded soil biodiversity.

Q: What major components or practices are part of regenerative agriculture?

A: Regenerative agriculture is a comprehensive system of farming that harnesses the power of soil biology to rebuild soil organic matter, diversify crop systems, and improve water retention and nutrient uptake. The depletion of biodiversity, degradation of soil health, warming, and drier weather in farm areas have necessitated a reversal in agriculture from “degeneration to regeneration.”

The practices address food and nutritional security challenges while protecting natural resources and lowering agriculture’s environmental footprint, in line with the United Nations Sustainable Development Goals. CIMMYT has worked for years to research and promote conservation agriculture, which contributes to the aims of regenerative agriculture, and is already practiced on more than 200 million hectares globally — 15% of all cropland — and is expanding at a rate of 10.5 million hectares per year.

Q: What are the potential roles of major food crops — maize, rice, and wheat — in regenerative agriculture systems?

A: Regenerative agriculture is “crop neutral;” that is, it is applicable to almost all crops and farming systems. The world’s rice, wheat, and maize crops have an enormous physical and ecological footprint on land and natural resources, but play a critical role in food and nutrition security. Considering that anthropogenic climate change has reduced the global agricultural total factor productivity by about 21% in the past six decades, applying regenerative agriculture approaches to these systems represents a momentous contribution toward sustainable farming under increasing climatic risks.

Download "Regenerative Agriculture for Soil Health, Food and Environmental Security: Proceedings and Recommendations” from the Trust for Advancement of Agricultural Sciences. — Download “Regenerative Agriculture for Soil Health, Food and Environmental Security: Proceedings and Recommendations”.

Q: What elements or approaches of regenerative agriculture are applicable in India and how can they be applied?

A: Regenerative practices for maize and wheat systems in India include no-tillage, crop residue recycling, legume inter-cropping and cover crops, crop diversification, integrated nutrient management, and precision water management.

The potential area of adoption for regenerative agriculture in India covers at least 50 million hectares across a diversity of cropping systems and agroecologies — including irrigated, rainfed, and arid farmlands — and can be approached through appropriate targeting, investments, knowledge and capacity enhancement, and enabling policies.

In the breadbasket region of the Indo-Gangetic Plains, regenerative agriculture can help address the aforementioned second-generation problems of the Green Revolution, as well as contributing to the Indian government’s Soil Health Mission and its COP26 commitments.

Q: In order to get regenerative agriculture off the ground in South Asia, who will be involved?

A: Adapting and applying regenerative agriculture’s portfolio of practices will require the participation of all stakeholders associated with farming. Application of these principles is location- and situation-specific, so researchers, extension functionaries, value chain actors, philanthropists, environmentalists, NGOs, farmers, and policy planners all have a role to play in the impact pathway.

CIMMYT, the Borlaug Institute for South Asia (BISA), public and private programs and agencies, and farmers themselves have been developing, refining, and scaling out conservation agriculture-based regenerative agriculture practices for some three decades in South Asia. CIMMYT and BISA will continue to play a key role in mainstreaming regenerative agriculture in local, national, and regional development plans through science-based policy and capacity development.

Q: Farmers constitute a strong economic and political force in India. How can they be brought on board to practice regenerative agriculture, which could be more costly and knowledge-intensive than their current practices?

A: We need to pursue business “unusual” and harness the potential opportunities of regenerative agriculture to sequester soil carbon and reduce greenhouse gas emissions. Regenerative agriculture practices can offer farmers additional income and certainly create a “pull factor” for their adoption, something that has already started and will constitute a strong business case. For example, innovative business models give farmers an opportunity to trade ecosystem services and carbon credits through repurposing subsidies and developing carbon markets for private sectors. CIMMYT, along with the Indian Council of Agricultural Research and private partners such as Grow Indigo, are already helping to put in place a framework to acquire carbon credits through regenerative agriculture in India.

For more information about the application of regenerative agriculture on India’s farmlands, see “Regenerative Agriculture for Soil Health, Food and Environmental Security: Proceedings and Recommendations” from the Trust for Advancement of Agricultural Sciences.

Cover photo: Brown and green fields. (Photo: Elizabeth Lies/Unsplash)