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funder_partner: Mexico's National Institute for Forestry, Agriculture and Livestock Research (INIFAP)

Q&A with 2019 Women in Triticum awardee Carolina Rivera

Carolina Rivera shakes the hand of Maricelis Acevedo, Associate Director for Science for Cornell University’s Delivering Genetic Gain in Wheat Project and WIT mentor, after the announcement of the WIT award winners.
Carolina Rivera (left) shakes the hand of Maricelis Acevedo, Associate Director for Science for Cornell University’s Delivering Genetic Gain in Wheat Project and WIT mentor, after the announcement of the WIT award winners.

As a native of Obregon, Mexico, Carolina Rivera has a unique connection to the heart of Norman Borlaug’s wheat fields. She is now carrying on Borlaug’s legacy and working with wheat as a wheat physiologist at the International Maize and Wheat Improvement Center (CIMMYT) and data coordinator with the International Wheat Yield Partnership (IWYP).

Given her talents and passion for wheat research, it is no surprise that Rivera is one of the six recipients of the 2019 Jeanie Borlaug Laube Women in Triticum (WIT) Early Career Award. As a young scientist at CIMMYT, she has already worked to identify new traits associated with the optimization of plant morphology aiming to boost grain number and yield.

The Jeanie Borlaug Laube WIT Award provides professional development opportunities for women working in wheat. The review panel responsible for the selection of the candidates at the Borlaug Global Rust Initiative (BGRI), was impressed by her commitment towards wheat research on an international level and her potential to mentor future women scientists.

Established in 2010, the award is named after Jeanie Borlaug Laube, wheat science advocate and mentor, and daughter of Nobel Laureate Dr. Norman E. Borlaug. As a winner, Rivera is invited to attend a training course at CIMMYT in Obregon, Mexico, in spring 2020 as well as the BGRI 2020 Technical Workshop, to be held in the UK in June 2020. Since the award’s founding, there are now 50 WIT award winners.

The 2019 winners were announced on March 20 during CIMMYT’s Global Wheat Program Visitors’ Week in Obregon.

In the following interview, Rivera shares her thoughts about the relevance of the award and her career as a woman in wheat science.

Q: What does receiving the Jeanie Borlaug Laube WIT Award mean to you?

I feel very honored that I was considered for the WIT award, especially after having read the inspiring biographies of former WIT awardees. Receiving this award has encouraged me even more to continue doing what I love while standing strong as a woman in science.

It will is a great honor to receive the award named for Jeanie Borlaug, who is a very active advocate for wheat research. I am also very excited to attend the BGRI Technical Workshop next year, where lead breeders and scientists will update the global wheat community on wheat rust research. I expect to see a good amount of women at the meeting!

Q: When did you first become interested in agriculture?

My first real encounter with agriculture was in 2009 when I joined CIMMYT Obregon as an undergraduate student intern. I am originally from Obregon, so I remember knowing about the presence of CIMMYT, Campo Experimental Norman E. Borlaug (CENEB) and Instituto Nacional de Investigación Forestales Agrícolas y Pecuario (Inifap) in my city but not really understanding the real importance and impact of the research coming from those institutions. After a few months working at CIMMYT, I became very engrossed in my work and visualized myself as a wheat scientist.

Q: Why is it important to you that there is a strong community of women in agriculture?

We know women play a very important role in agriculture in rural communities, but in most cases they do not get the same rights and recognition as men. Therefore, policies — such as land rights — need to be changed and both women and men need to be educated in gender equity. I think the latter factor is more likely to strengthen communities of women, both new and existing, working in agriculture.

In addition, women should participate more in science to show that agricultural research is an area where various ideas and perspectives are necessary. To achieve this in the long run, policies need to look at current social and cultural practices holding back the advancement of women in their careers.

Q: What are you currently working on with CIMMYT and IWYP?

I am a post-doctoral fellow in CIMMYT’s Global Wheat Program where I assist in collaborative projects to improve wheat yield potential funded by IWYP. I am also leading the implementation of IWYP’s international research database, helping to develop CIMMYT’s wheat databases in collaboration with the center’s Genetic Resources Program. Apart from research and data management, I am passionate about offering trainings to students and visitors on field phenotyping approaches.

Q: Where do you see yourself in the agriculture world in 10 years?

In 10 years, I see myself as an independent scientist, generating ideas that contribute to delivering wheat varieties with higher yield potential and better tolerance to heat and drought stresses. I also see myself establishing strategies to streamline capacity building for graduate students in Mexico. At that point, I would also like to be contributing to policy changes in education and funding for science in Mexico.

CIMMYT scientists recognized for top-ranking research impact

Five scientists from the CIMMYT community have been recognized with the Highly Cited Researcher award for 2018 for the influence of their research among their scientific peers.

The list, developed by Clarivate Analytics, recognizes exceptional research performance demonstrated by production of multiple papers that rank in the top 1 percent by citations for field and year, according to the Web of Science citation indexing service.

The honorees include:

  • Julio Huerta: CIMMYT-seconded INIFAP wheat breeder and rust geneticist;
  • Marc Corbeels: CIMMYT Kenya and CIRAD agronomist, who recently published work on carbon soil sequestration to mitigate climate change;
  • Matthew Reynolds: CIMMYT wheat physiologist and Mexican Academy of Sciences member;
  • Ravi Singh: CIMMYT Distinguished Scientist and Head of Bread Wheat Improvement; and
  • Sybil Herrera-Foessel: Former CIMMYT Global Wheat Program rust pathologist.

It is a significant honor to be part of this list, as it indicates that their peers have consistently acknowledged the influence of their research contributions in their publications and citations.

“This is a tremendous achievement and is a very good indicator for the relevance and quality of [their] publications,” said Hans Braun, director of CIMMYT’s Global Wheat Program and the CGIAR Research Program on Wheat (WHEAT).

For more information, you can view the Highly Cited Researchers 2018 list and the full methodology.

Preserving native maize and culture in Mexico

Felipa Martinez shows off some of her family’s maize from last year’s harvest. Photo: Matthew O’Leary

Felipa Martinez, an indigenous Mexican grandmother, grins as she shows off a bag bulging with maize cobs saved from last harvest season. With her family, she managed to farm enough maize for the year despite the increasing pressure brought by climate change.

Felipa’s grin shows satisfaction. Her main concern is her family, the healthy harvest lets her feed them without worry and sell the little left over to cover utilities.

“When our crops produce a good harvest I am happy because we don’t have to spend our money on food. We can make our own tortillas and tostadas,” she said.

Her family belongs to the Chatino indigenous community and lives in the small town of Santiago Yaitepec in humid southern Oaxaca. They are from one of eleven marginalized indigenous communities throughout the state involved in a participatory breeding project with the International Maize and Wheat Improvement Center (CIMMYT) to naturally improve the quality and preserve the biodiversity of native maize.

These indigenous farmers are custodians of maize biodiversity, growing seeds passed down over generations. Their maize varieties represent a portion of the diversity found in the 59 native Mexican races of maize, or landraces, which first developed from wild grasses at the hands of their ancestors. These different types of maize diversified through generations of selective breeding, adapting to the environment, climate and cultural needs of the different communities.

In recent years, a good harvest has become increasingly unreliable, as the impacts of climate change, such as erratic rainfall and the proliferation of pests and disease, have begun to challenge native maize varieties. Rural poor and smallholder farmers, like Martinez and her family, are among the hardest hit by the mounting impacts of climate change, according to the Food and Agriculture Organization of the United Nations.

These farmers and their ancestors have thousands of years of experience selecting and breeding maize to meet their environment. However, climate change is at times outpacing their selection methods, said CIMMYT landrace improvement coordinator Martha Willcox, who works with the community and coordinates the participatory breeding project. Through the initiative, the indigenous communities work together with professional maize breeders to continuously improve and conserve their native maize.

Despite numerous challenges, farmers in the region are unwilling to give up their maize for other varieties. “The native maize, my maize grows best here, it yields well in our environment. The maize is sweeter, it is heavier,” said Don Modesto Suarez, Felipa’s husband. “This maize has been grown by our grandfathers and this is why I will not change it.”

Una mujer de la comunidad Chatino prepara tortillas muy grandes de maíz criollo que son muy apreciadas en los mercados locales. Foto: Matthew O’Leary

This is because a community’s native maize varieties are adapted to their specific microclimate, such as elevation and weather patterns, and therefore may perform better or be more resistant to local pests and diseases than other maize varieties. They may also have specific characteristics prized for local culinary traditions — for example, in Santiago Yaitepec the native maize varieties have a specific type of starch that allows for the creation of extra-large tortillas and tostadas that are in high demand in local markets.

Other varieties may not meet farmers’ specific needs or climate, and many families do not want to give up their cultural attachment to native maize, said Flavio Aragon, a genetic resources researcher at the Mexican National Institute for Forestry, Agriculture and Livestock Research (INIFAP) who collaborates with Willcox.

CIMMYT and INIFAP launched the four-year participatory plant breeding project to understand marginalized communities’ unique makeup and needs – including maize type, local climates, farming practices, diseases and culture – and include farmers in breeding maize to suit these needs.

“Our aim is to get the most out of the unique traits in the native maize found in the farmer’s fields. To preserve and use it to build resistance and strength without losing the authenticity,” said Aragon.

“When we involve farmers in the process of selection, they are watching what we are doing and they are learning techniques,” he said. “Not only about the process of genetic selection in breeding but also sustainable farming practices and this makes it easier for farmers to adopt the maize that they have worked alongside breeders to improve through the project.”

Suarez said he appreciates the help, “We are learning how to improve our maize and identify diseases. I hope more farmers in the community join in and grow with us,” he said.

When disease strikes

Chatino men stand in a maize field in Santiago Yaitepec, Oaxaca, Mexico. Tar spot complex threatened harvests, but work in participatory breeding with CIMMYT has helped local communities to improve their native maize without loosing preferred traits. (Photo: Matthew O'Leary)
Chatino men stand in a maize field in Santiago Yaitepec, Oaxaca, Mexico. Tar spot complex threatened harvests, but work in participatory breeding with CIMMYT has helped local communities to improve their native maize without loosing preferred traits. (Photo: Matthew O’Leary)

Changes in weather patterns due to climate change are making it hard for farmers to know when to plant their crops to avoid serious disease. Now, a fungal disease known as tar spot complex, or TSC, is increasingly taking hold of maize crops, destroying harvests and threatening local food security, said Willcox. TSC resistance is one key trait farmers want to include in the participatory breeding.

Named for the black spots that cover infected plants, TSC causes leaves to die prematurely, weakening the plant and preventing the ears from developing fully, cutting yields by up to 50 percent or more in extreme cases.

Caused by a combination of three fungal infections, the disease occurs most often in cool and humid areas across southern Mexico, Central America and into South America. The disease is beginning to spread, possibly due to climate change, evolving pathogens and introduction of susceptible maize varieties.

“Our maize used to grow very well here, but then this disease came and now our maize doesn’t grow as well,” said Suarez. “For this reason we started to look for maize that we could exchange with our neighbors.”

A traditional breeding method for indigenous farmers is to see what works in fields of neighboring farmers and test it in their own, Willcox said.

Taking the search to the next level, Willcox turned to the CIMMYT Maize Germplasm Bank, which holds over 7000 native maize seed types collected from indigenous farmers. She tested nearly a thousand accessions in search of TSC resistance. A tedious task that saw her rate the different varieties on how they handled the disease in the field. However, the effort paid off with her team discovering two varieties that stood up to the disease. One variety, Oaxaca 280, originated from just a few hours north of where the Suarez family lives.

Farmer Modesto Suarez (left) and neighbors were originally cautious to plant Oaxaca 280 in their fields, but were pleased with the results. (Photo: Matthew O’Leary)
Farmer Modesto Suarez (left) and neighbors were originally cautious to plant Oaxaca 280 in their fields, but were pleased with the results. (Photo: Matthew O’Leary)

After testing Oaxaca 280 in their fields the farmers were impressed with the results and have now begun to include the variety in their breeding.

“Oaxaca 280 is a landrace – something from Mexico – and crossing this with the community’s maize gives 100 percent unimproved material that is from Oaxaca very close to their own,” said Willcox. “It is really a farmer to farmer exchange of resistance from another area of Oaxaca to this landrace here.”

“The goal is to make it as close as it can be to what the farmer currently has and to conserve the characteristics valued by farmers while improving specific problems that the farmers request help with, so that it is still similar to their native varieties and they accept it,” Aragon said.

Expanding for impact

Willcox and colleagues throughout Mexico seek to expand the participatory breeding project nationwide in a bid to preserve maize biodiversity and support rural communities.

“If you take away their native maize you take away a huge portion of the culture that holds these communities together,” said Willcox. Participatory breeding in marginalized communities preserves maize diversity and builds rural opportunities in areas that are hotbeds for migration to the United States.

“A lack of opportunities leads to migration out of Mexico to find work in other places, a strong agricultural sector means strong rural opportunities,” she said.

To further economic opportunities in the communities, these researchers have been connecting farmers with restaurant owners in Mexico City and the United States to export surplus grain and support livelihoods. A taste for high-quality Mexican food has created a small but growing market for the native maize varieties.

The next generation: The granddaughter of Felipa Martinez and Modesto Suarez stands in her grandparent's maize field. (Photo: Matthew O'Leary)
The next generation: The granddaughter of Felipa Martinez and Modesto Suarez stands in her grandparent’s maize field. (Photo: Matthew O’Leary)

Native maize hold the building blocks for climate-smart crops

Native maize varieties show remarkable diversity and climate resilience that grow in a range from arid to humid environments, said Willcox. The genetic traits found in this diversity are the building blocks that can be used to develop varieties suitable for the changing crop environments predicted for 2050.

“There is a lot of reasoning that goes into the way that these farmers farm the land, the way they decide on what they select for,” said Willcox. “This has been going on for years and has been passed down through generations. For this reason, they have maize of such high quality with resistance to local challenges, genetic traits that now can be used to create strong varieties to help farmers in Mexico and around the world.”

It is key to analyze the genetic variability of native maize, and support the family farmers who conserve it in their fields, she added. This biodiversity still sown and selected throughout diverse microclimates of Mexico holds the traits we need to protect our food supplies.

To watch a video on CIMMYT’s work in this community, please click here.

This work has been conducted as part of the CIMMYT-led MasAgro project in collaboration with INIFAP, and supported by Mexico’s Department of Agriculture, Livestock, Rural Development, Fisheries and Food (SAGARPA) and the CGIAR Research Program MAIZE

 

Field trial design workshop for smallholder farmers who grow maize landraces

As part of the efforts of the Sustainable Modernization of Traditional Agriculture (MasAgro) program aimed at improving food security based on maize landraces in marginal areas of the state of Oaxaca, Mexico, a workshop on trial design was held from 19-21 February to improve the precision of data on improved maize landraces in smallholder farmers’ fields. Attending the workshop were partners from the National Forestry, Agriculture and Livestock Research Institute (INIFAP) and the Southern Regional University Center of the Autonomous University of Chapingo (UACh).

The objective was to continue to have positive impacts on the marginalized communities of Oaxaca, by adapting to the hillside conditions and poor, uneven and broken up soils that often characterize the plots of farmers who grow maize landraces. The very varied trial designs in farmers’ fields, plus the varied population structure of maize landraces make it difficult for scientists to create efficient designs.

The training workshop was led by Dr. Martha Willcox, CIMMYT Maize Landrace program, and designed by Dr. Juan Burgueño and Mr. Claudio Ayala, who sought to facilitate breeding research in smallholder farmers’ fields and to continue to work for the benefit of more than 400 Oaxacan farmers. The project’s multi-disciplinary base includes genetic improvement, agronomic management and biostatistics in order to generate greater value and scientifically confirm the benefits that are being achieved in the fields of the country’s poorest farmers.

It should be noted that during the four years that MasAgro has worked on participatory breeding (2014-2017), INIFAP, UACh and CIMMYT have found that in marginalized communities, maize landraces with the characteristics mentioned above not only yield more, but also generate higher returns on investments, which benefits farmers. Smallholder farmers grow maize in many ecological niches outside the areas most favorable for intensive commercial agriculture and in areas where hybrid improvement programs have not been introduced or worked due to the extreme conditions, including fog, drought and disease. Maize landraces are better adapted to those areas and have the culinary qualities needed to make every-day and festive local dishes.

In addition, not only has maize production for home consumption improved, but farmers are now linked to gastronomic markets. During project years and with its help, maize began to be exported, with 10,000 kilograms exported in 2014 and more than 900,000 kg exported in 2017.

Study reveals diversity “blueprint” to help maize crops adapt to changing climates

EL BATAN, Mexico (CIMMYT) – Scientists have unlocked evolutionary secrets of landraces through an unprecedented study of allelic diversity, revealing more about the genetic basis of flowering time and how maize adapts to variable environments, according to new research published in Nature Genetics journal. The discovery opens up opportunities to explore and use landrace diversity in new ways to help breeders adapt crops to climate change and other emerging challenges to crop production.

Farmers worldwide have been ingeniously adapting landrace maize varieties to their local environments for thousands of years. In this landmark study, over 4,000 landraces from across the Americas were analyzed and their DNA characterized using recent advances in genomics.

A unique experimental strategy was developed to study and learn more about the genes underlying maize adaptation by researchers with the MasAgro Biodiversidad program and the Seeds of Discovery (SeeD) initiative.

Significantly, the study identified 100 genes, among the 40,000 that make up the maize genome, influencing adaptation to latitude, altitude, growing season and the point at which maize plants flower in the field.

Flowering time helps plants adapt to different environments. It is measured as the period between planting and the emergence of flowers, and is a basic mechanism through which plants integrate environmental information to balance when to make seeds instead of more leaves. The seeds form the next generation making flowering time a critically important feature in a plant’s life cycle.

Over the next century, increasingly erratic weather patterns and environmental changes projected to result from climate change mean that such crops as maize will need to adapt at an unprecedented rate to maintain stable production globally.

“This research offers a blueprint of how we can rapidly assess genetic resources for a highly variable crop species like maize, and identify, in landraces, those elements of the maize genome which may benefit breeders and farmers,” said molecular geneticist Sarah Hearne, who leads maize research within MAB/SeeD, a collaboration led by the International Maize and Wheat Improvement Center (CIMMYT) with strong scientific partnerships with Mexico’s research institute for agriculture, livestock and forests (INIFAP), the Antonio Narro Autonomous Agrarian University (UAAAN) in Mexico and Cornell University in the United States.

“This is the most extensive study, in terms of diversity, that has been conducted on maize flowering,” said Martha Willcox, maize landrace improvement coordinator at CIMMYT . “This was achieved using landraces, the evaluation of which is an extremely difficult and complex task.”

The groundbreaking study was supported by Mexico’s Ministry of Agriculture, Livestock, Rural Development, Fisheries and Food (SAGARPA) through the Sustainable Modernization of Traditional Agriculture (MasAgro) initiative. Additional support from the U.S. Department of Agriculture – Agricultural Research Service, Cornell University and the National Science Foundation facilitated the completion of vast quantities of data analysis.

“The knowledge we have gained from this work gives us something similar to a manual of ‘how to go on a successful treasure hunt;’ within the extensive genetic diversity that exists for maize. This knowledge can accelerate and broaden our work on developing resilient varieties, building upon millennia of natural and farmer selection in landraces,” Hearne said.

CORRECT CITATION:

Romero-Navarro, J. A., Willcox, M., Burgueño, J. Romay M. Swarts, K., Trachsel, S., Preciado, E., Terron, A., Vallejo Delgado, H., Vidal, V., Ortega, A., Espinoza Banda, A., Gómez Montiel, N.O., Ortiz-Monasterio, I., San Vicente, F., Guadarrama Espinoza, A., Atlin, G., Wenzl, P., Hearne, S.*, Buckler, E*. A study of allelic diversity underlying flowering time adaptation in maize landraces. Nature Genetics. http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3784.html
*Corresponding authors

Celebrating 50 years of collaboration: CIMMYT in the Mexican senate

eventosenadoMexico City, Mexico (CIMMYT) — In recognition of the contributions the International Maize and Wheat Improvement Center has made to agriculture and food security in Mexico and the world, a symposium was held 13th September at the Mexican Senate. Organized by the senate’s commission on agriculture and livestock, the symposium “50 years of CIMMYT in the Senate,” marked five decades of invaluable collaboration between the Center and the Mexican government.

CIMMYT was founded in Mexico in 1966 with the aim of improving food and nutritional security around the world. In the past 50 years, the agricultural research breakthroughs made by the Center and its scientists have produced nutritious and stress tolerant maize and wheat that has improved the lives and livelihoods of smallholder farmers and consumers around the world. None of these achievements would have been possible without the support of the Mexican Government, beginning with former president Adolfo Lopez Mateos’ support of the fledgling Center upon its founding and extending into the present day with cutting edge projects working to bring novel solutions to the challenges faced by Mexican agriculture.

“We are here today celebrating our 50th anniversary thanks to the leadership, vision and support of the Mexican people and their government that have allowed us to make this beautiful country our home,” said Martin Kropff, Director General of CIMMYT.

CIMMYT’s work has had incredible impact on the society and economies of Mexico and the world. “Around 50 percent of modern maize and wheat varieties planted around the world are descended from lines developed by CIMMYT,” Kropff announced. “Each year, these varieties generate between three and four billion dollars in profits for the farmers that grow them around the world.”

Kropff also recognized the important role that the Mexican government and other CIMMYT partners and allies, especially Mexico’s National Forestry, Agricultural and Livestock Research Institute (INIFAP), have played in this success. Fernando Flores Lui, Director General of INIFAP, referred to CIMMYT as a “pillar in the development of improved maize and wheat for the world,” and that their collaboration with the Center constitutes a “new model of collaboration based on equity and mutual support.”

simposio-senado-1In his welcome address to the symposium, Senator Manuel Cota Jiménez, president of the Mexican senate’s commission on agriculture and livestock, recognized the longstanding collaboration between CIMMYT and the Mexican government. “CIMMYT 50 marks a year for celebration, but also a year of challenges. CIMMYT has long worked to overcome the greatest challenges of agriculture in Mexico, it is our duty to continue working to ensure that our laws and public policies are in line with our goals for Mexican farmers and agriculture,” he said. “The countryside cannot remain isolated from science.”

One of the most fruitful examples of the success of this collaboration and partnership between CIMMYT and the Mexican government is the Sustainable Modernization of the Traditional Agriculture (MasAgro) project. A joint initiative of CIMMYT and Mexico’s Secretary of Agriculture, Livestock, Rural Development, Fisheries and Food (SAGARPA), MasAgro has developed 11 improved wheat varieties and over 40 improved maize varieties for the benefit of Mexican farmers.

In his keynote address, Bram Govaerts, director of MasAgro and CIMMYT’s regional representative in Latin America, presented on the project’s achievements over the past six years. A study from the University of Chapingo has shown that technicians who participate in the MasAgro project are nine times more efficient in their technical support to farmers than technicians who do not participate in the project. For the same amount of money invested, technicians using the MasAgro model reach nine times more farmers.

Govaerts also emphasized the importance of focusing on and supporting farmers in all components of agriculture to achieve the best results. “Planting improved seeds without agronomy is like trying to drive a racecar down a dirt road,” he said.

simposio-senado-2This support of the Mexican government will be equally crucial in the next 50 years if CIMMYT is to continue in its mission of improving food security and farmer livelihoods across the world. The relationship of collaboration and partnership between CIMMYT and the Mexican senate was strengthened and renewed through the open dialogue of the symposium, paving the way to implement the solutions necessary to ensure that improved maize and wheat varieties will be available not only to improve the lives and livelihoods of Mexican farmers, but to protect smallholder farmers and food security around the world.

“We still have so much left to accomplish, and that is why it is so important that we can count on the support of the legislators present today to maintain the budget for agricultural research and development,” Kropff said in his keynote address. “That is the objective of this symposium—to find solutions to the problems we face today and overcome them to achieve a food secure future for the Mexican people.”

The symposium was followed by a round table on maize and wheat improvement, agronomy and extension services held at the historic Casona de Xicoténcatl, the former headquarters of the Mexican senate. Over 30 researchers from CIMMYT and INIFAP participated in the event, as well as various representatives from different sectors of maize and wheat value chains in Mexico.

CIMMYT was honored by the attendance of Sanjaya Rajaram, 2014 World Food Prize laureate and keynote speaker at the symposium, and other distinguished guests including members of the Mexican senate’s commission on agriculture and livestock, senators María Hilaria Domínguez Arvizu, Silvia Garza Galván, Salvador López Brito and Adolfo Romero Lainas, as well as Patricia Ornelas Ruiz, director of the agrifood and fisheries information service (SIAP). The rectors of several Mexican agricultural universities also participated in the symposium, including Jesús Moncada de la Fuente of the Colegio de Posgraduados, Sergio Barrales Domínguez of the University of Chapingo and Jesús Valenzuela García of the Universidad Autónoma Agraria Antonio Narro. Representatives of various farmer groups and Mexican seed companies were also in attendance.

Learning partnerships turn research into results for Mexican agriculture

“CIMMYT is famous for helping farmers all over the world, but what fewer people know is that they also help Mexican researchers and students who will become the next generation of researchers through the courses and workshops they offer,” said Alejandro Ledesma, maize researcher at Mexico’s National Forestry, Agricultural and Livestock Research Institute (INIFAP). Above, Ledesma (L), receives certificate from CIMMYT Director General Martin Kropff, Juan Burgueño Ferreira, Head of CIMMYT’s Biometrics and Statistics Unit, and Kevin Pixley, Head of the Genetic Resources Program at a course on statistical analysis of genetic and phenotypic data for breeders held at CIMMYT. Photo: CIMMYT

The Seeds of Discovery (SeeD) project seeks to empower the next generation of Mexican scientists to use maize and wheat biodiversity to effectively meet the needs of Mexican agriculture in the future. By providing professional agricultural research and development opportunities for current and future maize and wheat scientists, SeeD works to ensure that the materials they develop will reach those who need it most. For this reason, SeeD is developing a platform of publicly available data and software tools that enable the efficient use of maize and wheat genetic resources. These genetic resources, or biodiversity, include more than 28,000 maize and 140,000 wheat samples, known as accessions, that are conserved in CIMMYT’s seed bank and available to researchers worldwide.

Genetic resources are the raw materials or building blocks used to develop new maize and wheat varieties needed to meet the demands of a growing population in a changing climate. Many of these maize and wheat accessions contain positive traits such as drought tolerance or disease resistance, which if bred into new varieties  have the potential to improve food security and livelihoods in countries such as Mexico in the global south.

However, the specific potential impact of SeeD on Mexican agriculture and society will only be realized if breeders and scientists effectively use the products resulting from the project. By inviting researchers, professors and students to participate in workshops, training courses and diverse research projects, a growing cadre of scientists is learning how to use the databases and software tools developed by SeeD and validating their utility.

Cynthia Ortiz places DNA samples into a thermal cycler in the CIMMYT Biosciences laboratory. Photo: Jennifer Johnson

“Sharing the knowledge generated by SeeD and making it available to the scientific community will help accelerate the development of new varieties that will benefit long-term food security in Mexico and the world,” said Cynthia Ortiz, a graduate student in biotechnology at the Center for Research and Advanced Studies of the National Polytechnic Institute (CINVESTAV) in Mexico City.

Ortiz is conducting research for her Master of Science thesis mentored by SeeD scientist Sukhwinder Singh, who is helping her map the quantitative trait loci (QTL) for phenological and grain yield-related traits in wheat varieties created by crossing synthetic wheat varieties with elite lines. She has participated in two SeeD workshops focusing on wheat phenotyping for heat, drought and yield as well as on the use of the maize and wheat molecular atlas, where she learned to use SeeD software such as Flapjack and CurlyWhirly to visualize the results of genetic diversity analyses.

“The materials SeeD has developed have opened the door for identifying genetic resources with positive traits such as heat and drought tolerance, or resistance to pests and diseases that affect crops all over the world,” Ortiz said. “And the best part is that at the same time, they have sought to protect the genetic diversity of these crops, using the native biodiversity we have in Mexico and the world to confront the challenge of ensuring food security.”

David Gonzalez, a recent graduate of the Chapingo Autonomous University in Texcoco, a city about 30 km (20 miles) from Mexico City, agrees. He worked with SeeD scientists Sarah Hearne and Terence Molnar on his Master of Science thesis, identifying genetic resources with resistance to the maize leaf disease “tar spot complex” (TSC) by using genome-wide association study (GWAS) and genomic selection.

David Gonzalez (L) scores maize plants for signs of tar spot disease alongside SeeD scientist Terence Molnar (R) in the state of Chiapas, Mexico. Photo: Jennifer Johnson

“The software and databases SeeD develops for analyzing genotypic and phenotypic data are novel tools that can be used for research as well as academic purposes,” Gonzalez said. “They are a valuable resource that can be utilized by academic institutions to train students in genetic analysis.”

Gonzalez attended the CIMMYT training course “Technologies for Tropical Maize Improvement,” where he learned about new tools for field trial design, data analysis, doubled haploid technology, molecular markers, GWAS and genomic selection.

“This training, as well as the valuable help and support from CIMMYT scientists, really helped me develop myself professionally,” he said. “It was exciting to work with such an ambitious project, doing things that have never been done before to discover and utilize maize and wheat genetic diversity for the benefit of farmers. I look forward to using what I’ve learned in my future career to develop varieties that meet the needs of farmers in Latin America.”

SeeD is a joint initiative of CIMMYT and the Mexican Ministry of Agriculture (SAGARPA) through the MasAgro project. SeeD receives additional funding from the CGIAR Research Programs on Maize (MAIZE CRP) and Wheat (WHEAT CRP), and from the UK’s Biotechnology and Biological Sciences Research Council (BBSRC).

INIFAP visit

As part of a Mexican government initiative to enhance the quality and service of its research organizations, on 20 September 2011 a team of specialists from the National Institute of Forestry, Agriculture, and Livestock Research (INIFAP) spent the day at El Batán interacting with CIMMYT staff on respective organizational cultures and values, missions and visions, research and business plans, and professional development.

Launching the visit with an overview of INIFAP, forestry support director Juan Bautista Rentería Anima described a rich and challenging research agenda keyed to Mexico’s diverse native crops and cropping environments. “In recent years the emphasis has again shifted to extension,” said Rentería, “trying to reach farmers with our products.”

Prefacing an introduction to CIMMYT, corporate communications head Mike Listman remarked on the strong parallels in scientific and institutional challenges facing both organizations. “I guess it shouldn’t come as a surprise, but we’re talking the same language on these issues” he said. The origins and evolution of CIMMYT are linked to INIFAP history, the director of the institute, Dr. Pedro Brajcich Gallegos, served as a CIMMYT wheat breeder, and both Brajcich and Salvador Fernández-Rivera, INIFAP Coordinator for Research, Innovation, and Partnerships, currently serve as CIMMYT Trustees.

Karen García, executive director of the Sustainable Modernization of Traditional Agriculture (MasAgro) project launched in 2010, highlighted the key role of INIFAP in the Mexico-funded initiative.

Presentations by Luz George, head of the project management unit, Carolina Roa, head of the intellectual property unit, and Carlos López, head of information and communications technology, addressed services and applications offered by those areas. Bibiana Espinosa, research assistant in wheat genetic resources, also took part in discussions. The event was organized by Isabel Peña, head of interinstitutional relations in Latin America.

The INIFAP team thanked CIMMYT warmly for its hospitality and open sharing of information. In a closing session, Scott Ferguson, deputy director general for support services, thanked the visitors for coming, and emphasized that CIMMYT is still finding its way to more efficient systems and structures: “We’ve doubled our budget over the four years, after 28 years of zero growth in real terms. We are dealing with all the organizational problems of such rapid and dramatic growth, and appreciate the chance to share experiences and ideas with a longstanding partner.”

The INIFAP group comprised Bertha Patricia Zamora, Director of Programs and Strategic Projects; Juan Bautista Rentería Anima, Director of Forestry Support; Vicente Santacruz García, Director of Planning; Ceferino Ortiz Trejo, Director of linking Operative Units; Héctor Peña Dueñas, Director of Human Development and Professionalism; Ramsés Gutiérrez Zepeda, Director of Evaluation and Systems; Francisco González Naranjo, Dirección of Efficiency and Accountability; Ricardo Noverón Chávez, Head of the Legal Unit; Edmundo Márquez Santana; Director of Scientific Exchange and Cooperation; Miguel Ignacio Moneta Porto, Head of Strategic Information Consolidation; and Omar Chávez Aguilera, Head of Agreements for Scientific Cooperation.

Scientists uncover DNA sequence of key wheat disease resistance gene

A global team of researchers that includes CIMMYT scientists has uncovered the molecular basis of a “wonder” gene that, in tandem with other resistance genes, has helped protect wheat from three deadly fungal diseases for more than 50 years, providing farmers benefits in excess of USD five billion in harvests saved.

Since the 1970s farmers have used wheat varieties that are resistant to leaf rust, a major fungal crop disease. Without these rust-resistant varieties, wheat farmers would have lost USD 5.36 billion in harvests. [Economics Program Paper 04-01] Now, a study in this month’s issue of the renowned Science journal has reported the sequencing of Lr34—a key gene underlying this “durable” resistance in wheat to leaf rust and to two other major diseases of the crop: stripe rust and powdery mildew. Until now, no one knew much about Lr34‘s physiological action. Uncovering its DNA sequence allowed the scientists to understand how the gene works.

“Combined with other minor-action genes, Lr34 does occasionally permit the pathogen to colonize and grow on the plant,” says Ravi Singh, CIMMYT wheat geneticist/pathologist and co-author of the Science report, “but it causes the disease to develop so slowly that yield losses are negligible. Lr34 has proven so useful that it’s been bred into wheat cultivars sown on more than 26 million hectares in various developing countries.”

Researchers from the University of Zurich and the Commonwealth Scientific and Industrial Research Organization of Australia (CSIRO) worked with Singh and co-author Julio Huerta-Espino, a rust scientist from Mexico’s national agricultural research institute, INIFAP, to sequence Lr34 and conduct combined molecular and field tests to uncover the gene’s resistance action. Among other things, they found that it behaves in a way unique from so-called “major” resistance genes.

The Lr34 gene encodes an adenosine-triphosphate (ATP) binding cassette transporter, according to CSIRO scientist Evans Lagudah, also a co-author on the Science report. ATP is a multifunctional “nucleotide”—a type of molecule that comprises the structure of DNA. It typically transports chemical energy within cells for metabolism. “In mammals, for example, ATP binding cassette transporters underlie resistance to chemo-therapeutic drugs in cancer treatment, where the transporters can pump out the drugs from the cancer cells,” says Lagudah. “In plants, certain transporters can inhibit or reduce pathogen colonization in infected tissues.”

Science in a deadly “arms race” against rust

In early research to breed rust-resistant wheat lines, scientists depended heavily on resistance genes showing “major” action; that is, completely blocking the entry or development of specific races of the rust fungus. This approach resulted in varieties that would yield well for some years—there was no predicting how long—but which would eventually fall to new, more virulent rust strains. “The major genes typically include a protein that ‘recognizes’ a protein in the pathogen, triggering the resistance reaction,” says Singh. “But with even a minute mutation in that pathogen protein, the resistance gene would no longer ‘detect’ an infection, no plant defense would be triggered, and the pathogen would thus regain virulence.”

Because of this, the wheat fields where farmers have sown varieties protected only by major resistance genes can be hit with sudden, potentially disastrous rust epidemics, as occurred in a large wheat-growing area in northern Mexico in the late 1970s. “The government and research organizations of the time were forced to undertake an expensive, military-like operation to quickly import and apply enough fungicide to avoid a total crop failure,” says Huerta-Espino.

To address such breakdowns in resistance, CIMMYT adopted a breeding strategy that entailed searching among diverse sources for resistance genes which, like Lr34, have small, additive effects that work across rust races. Researchers then would breed several such genes into high-yielding wheat varieties, according to Singh. “When CIMMYT wheat breeder Sanjaya Rajaram first implemented this strategy, it sounded good in theory, but there was no guarantee it would work,” says Singh. “The decision seems obvious now, but back then it was so risky that few breeding programs were willing to undertake it.”

The upshot for breeders

In addition to elucidating Lr34‘s cell-level action, the benefits of the new study include the development of a precise DNA marker for Lr34‘s presence in wheat varieties. This tool will allow breeders to manipulate the gene better in crosses or, according to Singh, focus on slow-rusting genes from other sources. “There are genes that appear to behave similarly to Lr34, but are different and are located elsewhere on the chromosome,” he says. “Because Lr34 is so common in our breeding materials, it’s hard to isolate these other genes. With the new marker, we can select against Lr34 to develop experimental wheat lines from which we’re sure it’s absent.” The lines can then be used in research on other slow-rusting genes and perhaps to create a wholly distinct type of resistance

Singh says CIMMYT is involved in additional work on other slow-rusting genes, similar to that reported in Science. “Collaboration is crucial in such studies,” he says. “No single group can handle the required lab and field work on its own.” He also hopes the Science report will prompt other groups to analyze slow-rusting genes, instead of the more-easily-studied major race-specific genes: “With demand going up and rising grain prices, and higher temperatures possibly favoring the emergence of new pathogen strains in developing country cropping areas, farmers need all the help they can get from research on disease resistance in staple cereals.”