Skip to main content

funder_partner: Kenya Agricultural & Livestock Research Organization (KALRO)

http://www.kalro.org/

CropSustaiN BNI Wheat Mission

Written by Julian Bañuelos-Uribe on . Posted in Uncategorized.

The Novo Nordisk Foundation and CIMMYT have launched the 4-year CropSustaiN initiative to determine the global potential of wheat that is significantly better at using nitrogen, thanks to Biological Nitrification Inhibition (BNI)—and to accelerate breeding and farmer access to BNI wheat varieties.

With a budget of US$ 21 million, CropSustaiN addresses the pressing challenges of nitrogen pollution and inefficient fertilizer use, which contribute to greenhouse gas (GHG) emissions and ecological degradation. Currently, no other seed or agronomic practice-based solution matches BNI crops’ mitigation impact potential. Growing BNI crops can complement other climate mitigation measures.

The challenge

Agriculture is at the heart of both food and nutrition security and environmental sustainability. The sector contributes ca. 10-12% of global GHG emissions, including 80% of the highly potent nitrous oxide (N2O) emissions. Fertilizer use contributes to such N losses, because plants take up about 50%, the remainder being lost. Wheat is the world’s largest ‘crop’ consumer of nitrogen-based fertilizer—a relatively nitrogen-inefficient cereal—at the same time providing affordable calories to billions of resource-poor people and ca. 20% of globally consumed protein. CropSustaiN targets this nexus of productivity and planetary boundary impact by verifying and thus de-risking the needed breeding, agronomic, and social innovations.

A solution: BNI-wheat

BNI is a natural ability of certain plant species to release metabolites from their roots into the soil. They influence the nitrogen-transforming activity of nitrifying bacteria, slowing down the conversion of ammonium to nitrate in the soil. This preserves soil ammonium levels for a longer time, providing plants with a more sustained source of available nitrogen and making them more nitrogen-use efficient (nitrogen plant use efficiency). As a result, BNI helps reduce the release of N2O gas emissions and nitrate leaching to the surrounding ecosystem.

A research breakthrough in 2021, led by the Japan International Research Center of Agricultural Sciences (JIRCAS) in collaboration with CIMMYT, demonstrated that the BNI trait can be transferred from a wheat wild relative to a modern wheat variety by conventional breeding. BNI wheat can be made available to farmers worldwide.

Growing BNI wheat could reduce nitrogen fertilizer usage by 15-20%, depending on regional farming conditions, without sacrificing yield or quality.

 

Incorporating BNI into additional crops would reduce usage further. Farmers can get the same yield with less external inputs.

Other BNI-crops

CropSustaiN will work on spring and winter wheats. Rice, maize, barley, and sorghum also have BNI potential. CropSustaiN will build the knowledge base and share with scientists working on other crops and agronomic approaches.

Objectives and outcomes

This high risk, high reward mission aims to:

  • Verify the global, on-farm potential of BNI-wheat through field trial research and breeding.
  • Build the partnerships and pathways to meet farmer demand for BNI-wheat seeds.
  • Work with stakeholders on policy change that enables BNI crops production and markets

Success will be measured by determining nitrogen pollution reduction levels under different soil nitrogen environments and management conditions on research stations, documenting crop performance and safety, breeding for BNI spring and winter wheats for a wide range of geographies, and gauging farmer needs, interest, and future demand.

Wheat spikes against the sky at CIMMYT’s El BatĂĄn, Mexico headquarters. (Photo: H. Hernandez Lira/CIMMYT)

A collaborative effort

CIMMYT is the lead implementer of Novo Nordisk Foundation’s mission funding. CropSustaiN’s interdisciplinary, intersectoral, systems approach relies on building partnerships and knowledge-sharing within and outside this research initiative. 45+ partners are engaged in CropSustaiN.

The potential GHG emissions reduction from deploying BNI-wheat is estimated to be 0.016-0.19 gigatonnes of CO2-equivalent emissions per year, reducing 0.4-6% of total global N2O emissions annually, plus a lowering of nitrate pollution.

Impact on climate change mitigation and Nationally Determined Contributions (NDCs)

The assumption is that BNI wheat is grown in all major wheat-growing areas and that farmers will practice a behavioral shift towards lower fertilizer use and higher fertilizer use efficiency. That could lead to ca. a reduction of 17 megatons per year globally. This can help nations achieve their NDCs under the Paris Agreement.

International public goods, governance, and management

CIMMYT and the Foundation are committed to open access and the dissemination of seeds, research data, and results as international public goods. The governance and management model reinforces a commitment to equitable global access to CropSustaiN outputs, emphasized in partnership agreements and management of intellectual property.

Invitation to join the mission

The CropSustaiN initiative is a bold step towards agricultural transformation. You are invited to become a partner. You can contribute to the mission with advice, by sharing methods, research data and results, or becoming a co-founder.

Please contact CropSustaiN Mission Director, Victor Kommerell, at v.kommerell@cgiar.org or Novo Nordisk Foundation’s Senior Scientific Manager, Jeremy A. Daniel, at jad@novo.dk.

Additional reference material

  1. BNI International Consortium (Japan International Research Center for Agricultural Sciences, JIRCAS)
  2. Nitrification inhibitors: biological and synthetic (German Environment Agency, Umweltbundesamt)
  3. CropSustaiN: new innovative crops to reduce the nitrogen footprint form agriculture
  4. Annual Technical Report 2024. CropSustaiN: A new paradigm to reduce the nitrogen footprint from agriculture
  5. BNI-Wheat Future: towards reducing global nitrogen use in wheat
  6. CIMMYT Publications Repository

Experts discuss strategies to address soil health challenges and the fertilizer crisis in Africa

Written by Julian Bañuelos-Uribe on . Posted in Blogs.

Group photo of the panelists at the AFSH Summit in Nairobi (Photo: Marion Aluoch)

Improving soil health is critical to sustainable agriculture, and for addressing climate change, tackling environmental challenges, and enhancing food security. Through projects by CIMMYT and partners, potential scalable solutions are under development, but additional work is still required.

“To effectively scale up soil health initiatives, we need to prioritize investments and establish a framework that maximizes returns,” said Bram Govaerts, CIMMYT director general, during the 2024 Africa Fertilizer and Soil Health (AFSH) Summit in Nairobi, Kenya. “It is crucial to use simple, quantifiable indicators for systematic assessments and decision-making, and to broaden these indicators to foster investment from public, private, and civil actors.”

As a keynote speaker in the “Strategies to Foster Africa’s Resilience to the Global Fertilizer Crisis” parallel session, Govaerts highlighted the intertwined challenges of soil health and fertilizer accessibility. “95% of our food comes from the soil, yet in 14 countries the cost of fertilizer has more than doubled. Fertilizers contribute to 2% of global greenhouse gas emissions and are often mismanaged—overused in some regions and underutilized in others.”

The transition to a more sustainable and climate-resilient approach to soil health and fertilizer use requires a comprehensive structure that considers broader aspects of agricultural sustainability. “To enhance soil health effectively, a clear framework is necessary that includes investment prioritization, integrated soil management, extension and advisory services, and the utilization of data and technology,” Govaerts added.

This recommended framework included identifying and prioritizing investment opportunities, balancing organic and inorganic inputs, strengthening extension systems, and leveraging technology to provide farmers real-time advice.

One practical example of effective soil health management in practice is CIMMYT’s Southern Africa Accelerated Innovation Delivery Initiative (AID-I) Rapid Delivery Hub. The project helps farmers cope with high fuel and fertilizer prices by providing them with innovative tools and information to manage cost and supply disruptions. This addresses systemic weaknesses in agriculture by accelerating market-based delivery of improved seed, fertilizer, and critical information to farmers.

“Under AID-I, rapid soil testing has been prioritized. Collaborating with the International Fertilizer Development Center (IFDC) and mobile soil labs like those in Zambia exemplify innovative data point collection strategies,” said Govaerts.

During the panel discussion, Anne Muriuki, principal research officer at the Kenya Agricultural and Livestock Research Organization (KALRO) highlighted the key challenges that African countries face in accessing fertilizers during global crises and the impact on agricultural productivity. “Farmers face scarcity and high costs, leading to reduced yields and increased reliance on unsustainable fertilizers. These issues not only reduce agricultural productivity, but they also aggravate food insecurity and economic instability.”

David Nielsen, a former World Bank official, stressed the importance of having site-specific soil information and investing in human capital and educational institutions to increase soil science expertise and improve the availability of site-specific information. “These two issues should be high priorities. They are crucial, especially when fertilizer access is limited, but they remain vital even with adequate fertilizer supply.”

Douglas Kerr, vice president of business development at the IFDC discussed how governments, international non-governmental organizations (NGOs), and the private sector can collaborate to ensure continuous access to fertilizer during a global crisis. The Sustain African Program was an example of IFDC’s role in gathering market information and developing a concept that has since been integrated into ongoing operations. “In a nutshell, multi-stakeholder collaboration needs to be open, transparent, supportive, and unified.”

Charlotte Hebebrand, director of communications and public affairs at the International Food Policy Research Institute (IFPRI), emphasized the need to increase fertilizer production within Africa, improve access to markets, and address response constraints to reduce shocks. “A major focus is on repurposing subsidies. It is sensitive but critical to determine the most efficient way to support farmers and promote soil health.”

Mehti Filali, senior vice president of OCP in West Africa, highlighted successful case studies from Ethiopia and Nigeria, where domestic initiatives and regional cooperation have resulted in significant agricultural growth. “Ethiopia has doubled crop production and created tailored fertilizer formulas, while Nigeria’s initiative has consolidated fertilizer procurement, created jobs, and saved US $250 million in foreign exchange. OCP’s contribution, though modest, has been critical, marked by significant milestones such as soil testing and the development of blending units.”

As Africa continues to face these challenges, the response must be dynamic, drawing on both local knowledge and scientific data. Robust data governance is essential for integrating soil health into market-driven decision-making, promoting crop diversification, and integrating organic and inorganic inputs for sustainable agriculture. “Let us remember the importance of integrating soil fertility management in a step-by-step manner, prioritizing action tailored to specific locations and conditions. Sophisticated extension systems, backed up by robust data, are crucial,” Govaerts concluded.

G7 summit highlights importance of sustainable food systems

Written by Julian Bañuelos-Uribe on . Posted in Blogs.

In a world grappling with regional conflicts, climate change, and fragile food systems, the G7 emphasized sustainable agriculture and food security as essential for global stability in a recent communique. CIMMYT supports this vision through the Vision for Adapted Crops and Soils (VACS) initiative, which the G7 recognized as essential in transforming food systems. VACS aims to boost agricultural productivity with climate-resilient crops and healthy soils.

“With our partners, we will work on concrete and ambitious actions to achieve long-term sustainable development, strong environmental, social, and governance standards, and shared prosperity worldwide,” stated the G7 communique.

Fortifying indigenous crops

The G7 statement highlights the importance of dryland crops for sub-Saharan Africa, particularly ancestral grains and peas in securing nutrient-rich diets. CIMMYT, with over 75 partners such as WorldVeg and the Kenya Agricultural and Livestock Research Organization (KALRO), implements the VACS Quick Wins Seed Systems Project across west, east, and south Africa. The project promotes adoption of dryland grains and legumes, helps smallholders obtain climate-resilient seeds, and connects them with markets and agri-services. CIMMYT and its partners recently published a report which identifies the required training in crop breeding to support project implementation across the continent.

“VACS is working to improve the livelihoods of smallholders,” said Bram Govaerts, CIMMYT’s director general. “CIMMYT is implementing VACS focused on crop breeding, seed systems, partnerships, and capacity development. These areas protect our most important grains from further fragility.”

CIMMYT is also leading genetic research by predicting novel traits necessary for future crop varieties. A 2023 study published in Molecular Plant by CIMMYT scientists identified essential traits in six crops: sorghum, pearl millet, groundnut, cowpea, maize, and common bean. These characteristics could improve global food and nutrition security. High-yielding traits in legumes are being scaled up for delivery by CIMMYT and Afriseed through the Southern Africa Accelerated Innovation Delivery Initiative (AID-I) Rapid Delivery Hub, targeting over 35,000 smallholders in Zambia during 2023-2024.

Monitoring Field Visit in Mali, West Africa. (Photo: CIMMYT)

Capacity development through sustained global partnerships

Several G7 members, including the United States, support CIMMYT’s efforts with VACS. A key component of the initiative is capacity building for local researchers and practitioners. A recent initiative aims to train African breeding programs and research professionals, creating a cohort of VACS Fellows to strengthen local and regional food systems. In Guatemala, InnovaHubs, through partnership with CGIAR, Mexico, and Norway, brings farmers closer to markets, technologies, and high-quality seeds.

Strategy for the future

With over 130 countries depending on food imports and over 1.3 billion people considered food insecure, CIMMYT’s 2030 Strategy provides a comprehensive plan forward for agrifood systems through innovative research and partnerships. “Our partners provide the local knowledge and expertise to ensure our research has an impact on smallholder communities. Only through close collaboration with local actors can we transform global food production to become more inclusive and sustainable,” said Govaerts. “We stand ready to support G7 goals for shared prosperity.”

Collaboration across the seed system value chain

Written by Julian Bañuelos-Uribe on . Posted in Blogs.

Collaboration among diverse seed value chain actors is essential to improving seed systems for dryland crops in Kenya and contributing to food security in an era marked by climate change. This holistic approach is essential at a time when sustainable agricultural practices are increasingly becoming pertinent in semi-arid and high-potential areas, as emphasized by participants attending a multi-stakeholder seed systems meeting in Nairobi.

The Kenya Drylands Crop Seed Systems Workshop in February 2024 brought together various stakeholders from the agricultural sector, including farmers, policymakers, researchers, and the private sector. The main aim of this meeting was to identify practical ways to address critical challenges in the seed system for key dryland crops—pigeon pea, chickpea, groundnut, millets, and sorghum—essential to the livelihoods of millions in Kenya. Organized by CIMMYT and the Kenya Agricultural and Livestock Research Organization (KALRO), this collaborative effort aimed to gather insights and jointly develop a seed systems strategy to strengthen a seed supply system that matches grain demand for these essential grains.

A group photo of the participants in the Kenya Drylands Crop Seed Systems Workshop. (Photo: Maria Monayo/CIMMYT)

While moderating the discussion, Patrick Ketiem, director of agricultural mechanization research at KALRO, highlighted the importance of the situation. “The demand for drought-tolerant dryland crops and varieties is a clarion call for breeders to innovate further,” he explained. This reflects a broader trend across the country, where even high-potential areas are shifting to dryland crops in response to unpredictable weather patterns.

Addressing farmer needs

The workshop allowed participants to delve into the intricacies of seed systems, from varietal preferences to market readiness, highlighting the importance of collaboration among breeders, distributors, and farmers. Moses Siambi, CIMMYT’s regional director for Africa, emphasized the importance of integrating passion with science to make a tangible difference in the lives of farmers. “Our work is not just about developing varieties,” Siambi remarked. “It’s about improving livelihoods and ensuring that the benefits of our research reach the smallholder farmer,” he explained, emphasizing the broader impact of CIMMYT’s efforts to boost agricultural productivity, food security, and livelihoods in the face of climate change.

Moses Siambi, CIMMYT’s regional director for Africa, engages in a conversation with a participant. (Photo: Maria Monayo/CIMMYT)

Chris Ojiewo, partnerships and seed systems lead at CIMMYT, explained the vision for the Dryland Crops program, referencing the journey of the Accelerated Varietal Improvement and Seed Delivery of Legumes and Cereals in Africa (AVISA) project, which was a culmination of a decade of research aimed at introducing new, diverse, and farmer-preferred crop varieties to farming communities through a variety of seed delivery models.

“The essence of our endeavor is to ensure that the genetic gains from our breeding efforts result in real benefits for the farmers,” he said. “Developing seed varieties with the end-user in mind is crucial to ensure that crops not only reach the farmers but also meet their specific needs effectively.”

Chris Ojiewo, partnerships and seed systems lead at CIMMYT, provides insights on the future of the Dryland Crops program, leveraging ten years of research from AVISA. (Photo: Maria Monayo/CIMMYT)

Improving seed systems

The workshop discussions also highlighted the importance of innovation in seed delivery models and the need for increased investment in the dryland crops sector as essential strategies for addressing current challenges and capitalizing on new opportunities. Investment decisions will be guided by granular data on local grain demand, enhancing seed production planning. Additionally, insights from institutions such as the Agriculture and Food Authority (AFA) and the State Department of Agriculture, consolidating per capita consumption data, will aid in determining the requisite seed supply per capita. Moreover, there is need for a mechanism for facilitating knowledge through consolidating data from existing projects that tackle comparable challenges related to food security and seed accessibility.

Lusike Wasilwa, crops systems director at KALRO, who represented the organization’s director general at the event, stressed the importance of seeds in agriculture. “From genes to gains, our focus is on developing climate-smart, nutritious crops that not only enhance soil health but also ensure food security in Kenya,” Wasilwa said. She further highlighted the importance of soil health and market development in achieving sustainable food production in arid and semi-arid lands, promoting biodiversity, and sustainable land management practices.

Lusike Wasilwa, the crops systems director at KALRO, who represents the organization’s director general at the event, emphasizes the importance of seeds in agriculture. (Photo: Maria Monayo/CIMMYT)

Cross-cutting issues

The workshop also addressed regulatory and control measures in seed production with Stellamaris Mulika, principal seed inspector from the Kenya Plant Health Inspectorate Service (KEPHIS), highlighting the importance of stringent quality control measures to ensure the dissemination of quality seed of superior crop varieties.

The importance of gender inclusivity and youth engagement in agriculture was also acknowledged, reflecting women and youth’s critical role in legume and cereal variety selection, diversifying seed sources, and meaningfully contributing to the seed value chain. Veneza Kendi, a student at Jomo Kenyatta University of Agriculture and Technology (JKUAT), proposed several interventions to increase investment capacity for farmers and aggregators, mainly from the assurance of high yields from certified seeds to farmers, serving as a motivation.

Gloria Mutheu, a seed merchant at Dryland Seed Company, highlighted the need for government support in investing in the grain sector, citing the school feeding program as an initiative to pull seed demand. Mutheu urged the government to expand the crop types in legumes and cereals, such as chickpeas, included in these school feeding programs to increase demand. This, she argued, would gradually establish an inclusive seed system for increasing uptake of these underutilized but opportunity nutrient-dense crops.

Gloria Mutheu, a seed merchant at Dryland Seed Company, and Veneza Kendi, a student at Jomo Kenyatta University of Agriculture and Technology (JKUAT), discuss the vital role of youth in the seed systems value chain. (Photo: Maria Monayo/CIMMYT)

The consensus was clear: to enhance the seed systems for dryland crops, there must be collaboration across the entire value chain—from breeders to farmers, from policymakers to the private sector. This integrated approach is critical for Kenya’s climate change adaptation, food security, and promotion of sustainable agricultural practices.

Spearheaded by CIMMYT with financial support from the Bill and Melinda Gates Foundation and the United States Agency for International Development (USAID), the AVISA project seeks to improve breeding and seed systems of dryland crops, as well as the livelihoods of small-scale producers and consumers in sub-Saharan Africa. CIMMYT is leveraging this opportunity to advance research and expand its influence through its 2030 strategy that shapes the future of agriculture as a driver of food and nutrition security, and climate resilient, sustainable, and inclusive agricultural development.

Successful surveillance results in early first detection of Ug99 in South Asia

Written by Julian Bañuelos-Uribe on . Posted in News.

Successful global wheat disease surveillance and monitoring has resulted in early detection of wheat stem rust Ug99 in Nepal. A combination of vigilant field surveys and sampling by Nepal’s National Plant Pathology Research Centre (NPPRC) and National Wheat Research Program (NWRP), supported by rigorous and accurate disease diagnostics at the Global Rust Reference Center (GRRC), Denmark, resulted in confirmed detection of the Ug99 strain named TTKTT. The long running and sustained surveillance efforts undertaken by NPPRC and NWRP, including off-season surveys, proved vital in the detection of Ug99 in Nepal. Confirmed results were obtained from two field samples collected in early November 2023 from off-season summer wheat crops in Dolakha district, Nepal. Repeated experiments and high quality pathotyping and genotyping at GRRC confirmed the results.

“The combination of molecular genotyping of incoming samples, without prior recovery in our laboratory and independent diagnostic assays of recovered stem rust isolates, confirmed the presence of Ug99 and a highly virulent race variant termed TTKTT,” says professor Mogens Hovmþller, leader of the GRRC at Aarhus University in Denmark.

Suraj Baidya (NPPRC) and Roshan Basnet (National Wheat Research Program) undertake field surveys at Dandunghe, Dolakha, Nepal. (Photo: CIMMYT)

Ug99 was first detected in East Africa in 1998/99, and its unique virulence sparked fears that a large proportion of wheat cultivars globally would be at risk from this potentially devastating disease. The international wheat community came together through the Borlaug Global Rust Initiative (BGRI) to address the threats posed by Ug99. The BGRI partners have successfully monitored the evolution and spread of Ug99 and bred hundreds of resistant wheat varieties that are now being grown at scale in priority wheat growing regions. Migration of Ug99 from Africa to other regions, including South Asia, was always seen as likely due to the transboundary nature of the disease and long-distance dispersal of rust spores by wind.

Detection of a Ug99 race in Nepal is not therefore a surprise, but it highlights the effectiveness of the wheat rust surveillance and monitoring systems that have been developed. The disease was present at extremely low levels in the fields in Nepal, and early detection is one of the main factors in preventing disease spread. Other factors also contribute to reduced risk. The wheat on which the Ug99 race TTKTT was detected were fodder crops and cut soon after the surveys were completed, which prevented further buildup of disease. In addition, no wheat is grown in the main season in these areas, with farmers shifting to cultivation of potato (a non-host crop for stem rust).

According to Suraj Baidya, senior scientist and chief of NPPRC, “Extensive follow up surveys in the Dolakha detection area by NPPRC in the 2023/24 main season resulted in no wheat being observed and no detection of stem rust.” Similarly, extensive surveys by NPPRC throughout other wheat growing areas of Nepal in the 2023/24 main season have resulted in no reports of stem rust in the country. To date, extensive surveys in other countries in South Asia (Pakistan, Bangladesh, Bhutan) have not detected stem rust in 2023/24.

Although the current risk of stem rust outbreaks is considered to be low, detection of the Ug99 race TTKTT in Nepal is a clear reminder of the threat posed to wheat production in South Asia by the incursion of virulent stem rust races or other plant diseases of concern. “The spread and risk from transboundary diseases like stem rust is increasing,” says Dave Hodson, leader of the Wheat Disease Early Warning Advisory Systems (DEWAS) project at CIMMYT. “Sustained and increased surveillance efforts are needed across the region and expanded to include other important emerging diseases.” Successful deployment of Ug99 resistant cultivars through the BGRI partners, including CIMMYT, ICARDA and NARS, has decreased vulnerability, but it is important to note that the race TTKTT is a recently evolved variant of Ug99 with additional virulence compared to the original strains. As a result, not all cultivars in South Asia may have effective resistance today. Screening of germplasm and major cultivars from South Asia against TTKTT at the Kenya Agriculture and Livestock Research Organization (KALRO)/CIMMYT international stem rust screening nursery in Kenya is extremely important to get an accurate picture of current vulnerability.

The details of the diagnostic confirmation of Ug99 in Nepal are available at the GRRC website (see GRRC lab report)

Work on wheat disease surveillance and monitoring, plus breeding of resistant varieties is being supported by the DEWAS and AGG projects funded by BMGF and FCDO, UK.

Key partners –

National Plant Pathology Research Centre (NPPRC), Nepal. Contact: Suraj Baidya (suraj_baidya222@yahoo.co.in)

National Wheat Research Program (NWRP), Nepal. Contact: Roshan Basnet

Global Rust Reference Center (GRRC), Aarhus University, Denmark. Contact: Mogens HovmĂžller (mogens.hovmoller@agro.au.dk)

Cornell University. Contact: Maricelis Acevedo (ma934@cornell.edu)

CIMMYT. Contact: David Hodson (d.hodson@cgiar.org)

East African wheat breeding pipeline and E&SSA network

Written by Julian Bañuelos-Uribe on . Posted in Blogs.

Healthy wheat and wheat affected by Ug99 stem rust in farmer’s field, Kenya. (Photo: CIMMYT)

The East African wheat breeding pipeline aims to improve wheat varieties and contribute to regional food security by ensuring a stable and resilient wheat supply. In 2022, CIMMYT, in partnership with the Kenya Agriculture and Livestock Research Organization (KALRO) established a Joint Breeding Program in Njoro, a town southwest of the Rift Valley in Kenya. This was one of the first integrated breeding pipelines between CGIAR and National Agricultural Research and Extension Systems (NARES) partners.

Over the last three decades, genetic trials of over 77 varieties have been conducted in several regions. In East Africa, an expanded testing network that spans over multiple research institutes in Kenya and Ethiopia has been established for Stage 1 and Stage 2 trials in network countries. This makes the pipeline a powerful driver of positive impacts, rapidly enhancing both farm productivity and production in target regions. In Kenya specifically, a genetic gain trial was conducted at two sites in 2023 with the Stage 1 trials evaluated across eight locations. These are being distributed to NARES partners to establish correlations between the breeding site in Kenya and the Target Population of Environments (TPEs) in the E&SSA regions. This breeding pipeline demarcates the population improvement from product development. Other areas in the trials include the enhancement of genetic diversity to build resilience, adaptability, and quality enhancement to meet market and consumer demands.

The trial will continue in 2024 and 2025 to establish a baseline for genetic gains and to enable the assessment of the breeding pipeline’s progress in the coming years. The first cohort of pipeline materials (250 crosses) has been advanced to F2 generation and will be ready for distribution to E&SSA partners in 2025.

Accelerated breeding

The anticipation is that accelerated breeding techniques will be implemented in Kenya by incorporating a three-year rapid generation bulk advancement (RGBA) scheme aimed at diminishing the time necessary for variety development and release. This collaborative effort encompasses various activities, including joint crossing block, generation advancement, yield testing, and population improvement. The three-year RGBA scheme, coupled with data-driven selection utilizing advanced data analytics (GEBV, SI) and genomic selection approaches, is expected to play a pivotal role in facilitating informed breeding decisions in the East African region.

3-year RGBA scheme. (Photo: Sridhar Bhavani)

Varietal improvement

The project aims to develop and release improved wheat varieties that are well adapted to the East African agroecological conditions. The Kenyan environment closely mirrors wheat-growing conditions in Ethiopia, Tanzania, Uganda, Rwanda, and Burundi, and spillover impacts to sub-Saharan countries such as Zambia and Zimbabwe. This strategic alignment with local conditions and close cooperation with NARES partner organizations has proven to be very effective in addressing critical gaps, including high-yield potential, disease resistance, and climate resilience, and aligns with CIMMYT’s overall wheat strategy for Africa.

Enhanced disease resistance

Kenya stands out as a hotspot for rust diseases, showcasing notable diversity in stem rust variants (ug99) and yellow rust. The virulence spectrums of these diseases differ from those found in Mexico, posing challenges to effective breeding strategies. It is expected that the breeding pipeline will effectively tackle these challenges as well as those associated with fusarium, Septoria, and wheat blast, which are on the rise in African environments.

Climate adaptation

The East African wheat breeding pipeline is committed to breeding wheat varieties that can thrive in changing climatic conditions, including heat and drought tolerance, and expanding testing in marginal rainfed environments experiencing heat and drought stress.

Through the support of our partners and funders from the Bill and Melinda Gates Foundation, Foundation for Food and Agriculture Research (FFAR), and Foreign, Commonwealth and Development Office FCDO, the following achievements can be reported:

Regional collaboration and cooperation

For over four decades, the enduring collaboration with KALRO has yielded significant successes including the operation of the largest phenotyping platform for stem rust and various diseases. The Mexico-Kenya shuttle breeding program, incorporating Ug99 resistance, has successfully countered the threat of stem rust by releasing over 200 varieties in targeted regions and advancing the East African wheat breeding pipeline. The plan is to replicate these accomplishments in other target regions through the E&SSA network. To address limitations in KALRO’s breeding program and to conduct standardized trials, a strategic partnership with a private seed company Agventure Cereal Growers Association has been established. This collaboration will facilitate yield testing at multiple sites in Kenya to identify lines with superior performance for the East African region. So far, lines exhibiting high yield potential of up to 8 tons/ha, even under rain-fed environments, have been identified. The collaborative efforts are already making a noticeable impact, as evidenced by reports indicating increased adoption of zero-tillage practices among farmers. This shift has proven beneficial, especially during years marked by heat and drought challenges, resulting in higher returns for these farmers.

Increased capacity of national programs

From 1-13 October 2023, the AGGMW project held a training program on “Enhancing Wheat Disease Early Warning Systems, Germplasm Evaluation, Selection, and Tools for Improving Wheat Breeding Pipelines”. The course which brought together 33 participants from over 13 countries was held at the KALRO station in Njoro- Kenya. The comprehensive program covered a wide range of crucial subjects in the field of wheat breeding and research. Topics included breeding methodologies, experimental design, data collection, statistical analysis, and advanced techniques such as genomic selection. Participants also engaged in practical hands-on data analysis, explored rust pathology, and delved into early warning systems. Moreover, they had the opportunity for direct evaluation and selection of breeding materials. The course aimed to equip participants with a diverse skill set and knowledge base to enhance their contributions to the field of wheat breeding and research.

Other initiatives supporting the breeding pipeline include CGIAR programs, Accelerated Breeding and Crops to End Hunger. This multi-faceted approach within the breeding pipeline underpins the importance of fostering regional collaboration, knowledge sharing, and strategic investments in enhancing wheat production and addressing critical challenges in the region.

Market segmentation and Target Product Profiles (TPPs): developing and delivering impactful products for farming communities

Written by Julian Bañuelos-Uribe on . Posted in Blogs.

Experimental maize field. (Photo: CIMMYT)

With the ever-changing climate conditions, including the unpredictable El Niño, and dynamic changes in government policies, understanding farmers’ preferences and market segmentation has become crucial for implementing impactful breeding programs. Market segmentation is a strategic process which divides a market into distinct group of consumers with similar needs, preferences, and behaviors. This allows organizations to tailor their products and services to specific customer segments, thus ensuring maximum value and impact.

In today’s fast-paced and evolving agricultural landscape, market segmentation plays a vital role in helping organizations navigate the complexities of a dynamic market. CIMMYT’s maize breeding program has a successful track record in developing and delivering improved varieties that are climate-resilient, high-yielding and suited to the rainfed tropical conditions in Africa. To further strengthen the impact, it is important to have a clear understanding of the evolving needs of farmers in different agroecological regions and the emerging market scenario so that breeding processes can be tailored based on market needs and client requirements.

Questions arise on how to refine the breeding programs relative to country-specific market segments, what efforts are underway to target these markets, and how do these markets transition. Recognizing the importance of market segmentation in refining breeding programs at the country and regional levels, CIMMYT hosted two workshops on maize market intelligence in Kenya and Zimbabwe, under the CGIAR Market Intelligence Initiative for eastern and southern Africa.

“Market intelligence in breeding programs is critical to understand the evolving needs of key stakeholders, including farmers, consumers, and the seed industry. It helps continuously improve the breeding pipelines to develop and deliver impactful products in targeted market segments. The workshops brought together relevant experts from the national programs and seed companies for focused discussions to develop a harmonized breeding strategy. This would help to address the needs of smallholder maize farmers in eastern and southern Africa,” said Director of CIMMYT’s Global Maize program and One CGIAR Global Maize Breeding Lead, B.M. Prasanna.

B.M. Prasanna delivers a presentation. (Photo: CIMMYT)

The workshops constituted a strategic continuation of the Product Design Team (PDT) meetings under CGIAR Market Intelligence, with a focus on the refinement of gender-intentional target product profile design. Guided by the expertise of CIMMYT’s Global Maize program, Market Intelligence, and ABI-Maize Transform teams, the sessions saw active participation from key stakeholders including lead breeders, seed systems experts, and market specialists from the National Agricultural Research and Extension Systems (NARES), alongside collaborative engagement with seed company partners. The workshops underscored the commitment to incorporate diverse perspectives, aligning with the evolving maize market landscape in eastern and southern Africa.

“The workshop provided critical insights on opportunities to improve market penetration of improved maize varieties. There is a need to strike a balance between the needs of the farmers, seed industry, and consumers in variety development; actively involve farmers and consumers in variety selection and understanding their preferences; and focus on emerging needs of the market such as yellow maize for feed and food,” said James Karanja, maize breeding lead at the Kenya Agriculture & Livestock Research Organization, Kenya.

Insights from both workshops underscored the importance of providing breeders with pertinent information and comprehensive training. The discussions illustrated the necessity for breeders to define their objectives with a 360-degree outlook, aligning breeding programs with market segments and interfacing with CIMMYT’s regional vision.

Workshop participants. (Photo: CIMMYT)

“The market intelligence workshop is an excellent initiative for the breeding programs. It shows how traits can be identified and prioritized, based on farmers’ requirements. The maize value chain is broad, and the synergy between the developer of the product (breeder), the producer (farmer), and the consumer needs to be effective. Hence, streamlining of the market segments and eventually the target product profiles is key in ensuring that the breeders develop improved products/varieties with relevant traits that address the needs of farmers, consumers, and the seed industry,” said Lubasi Sinyinda, breeder from the Zambia Agricultural Research Institute, Zambia.

Another participant, Lucia Ndlala, a maize breeder at the Agricultural Research Council, South Africa, echoed similar enthusiasm. “The workshop was exceptionally informative, providing valuable insights into target product profiles and market segments. This knowledge will undoubtedly prove instrumental in shaping future breeding strategies,” she said.

When applied through a breeding lens, market segmentation is a vital tool in refining breeding programs at both country and regional levels, enabling breeders to better understand and address the diverse needs of the farmers, and ensuring that the improved varieties are tailored to market segments.

Ten years later: CIMMYT facilities in East Africa continue to make a difference

Written by Julian Bañuelos-Uribe on . Posted in News.

CIMMYT and partners in Kenya recently marked the 10th anniversary of two major facilities that have been crucial for maize breeding in sub-Saharan Africa. The Maize Doubled-Haploid (DH) facility and the Maize Lethal Necrosis (MLN) screening facility at the Kenya Agriculture and Livestock Research Organization (KALRO) centers in Naivasha and Kiboko, respectively, have made immense contributions to the rapid development of higher-yielding, climate-resilient and disease-resistant maize varieties for smallholder farmers across the continent.

An aerial photo of the Naivasha Research Center. (Photo: CIMMYT)

“These two facilities have been instrumental in furthering KALRO’s mission to utilize technology in the service of Kenya’s smallholder farmers,” said KALRO Director General/CEO, Eliud Kireger. “They also exhibit the spirit of cooperation and collaboration that is necessary for us to meet all the challenges to our food systems.”

“Deploying a higher yielding maize variety may not be impactful in eastern Africa if that variety does not have resistance to a devastating disease like MLN,” said CIMMYT’s Director General Bram Govaerts. “These two facilities demonstrate the holistic methods which are key to working towards a more productive, inclusive and resilient agrifood system.”

Maize DH facility

Hybrid maize varieties have much higher yields than open-pollinated varieties and are key to unlocking the agricultural potential of maize producing countries. The doubled haploid process is an innovative technology producing within a year genetically true-to-type maize lines that serve as building blocks for improved maize hybrids.

Unlike conventional breeding, which takes at least 7 to 8 generations or crop seasons to develop parental lines, DH lines are generated within two seasons, saving significant time, labor and other resources. DH maize lines are highly uniform, genetically stable, and are more amenable to the application of modern molecular tools, making them perfect resources for breeding elite maize hybrids.

Workers in the Kiboko Double Haploid facility. (Photo: CIMMYT)

The aim of CIMMYT’s maize DH facility is to empower the breeding programs throughout the low-and middle-income countries in Africa by offering a competitive, accessible, not-for-profit DH production service that will accelerate their rate of genetic gain and fast-track development of improved maize varieties for farming communities.

Since 2017, the DH facility has delivered 280,000 DH lines from 1,840 populations of which 20% were delivered to public and private sector partners. CIMMYT maize breeding programs and partner organizations have embraced the use of DH technology, with many of the newest maize hybrids released in Africa being derived from DH lines. The facility has also served as a training ground so far for over 60 scientists and hundreds of undergraduate students in modern breeding technologies.

“Before 2013, DH technology was mainly employed by private, multinational corporations in North America, Europe, Asia and Latin America,” said CIMMYT’s DH Facility Manager, Vijay Chaikam. “But the DH facility operated by CIMMYT at the KALRO Kiboko research station is specifically targeted at strengthening the maize breeding programs by the public sector institutions as well as small-and medium-size enterprise seed companies in Africa.”

The maize DH facility at Kiboko, Kenya, was established with funding support from the Bill & Melinda Gates Foundation and inaugurated in September 2013. The facility includes an administrative building, seed quality laboratory, training resources, artificial seed dyer, a cold-storage seed room, a chromosome doubling laboratory, greenhouse and a state-of-the-art irrigation system to support year-round DH production in the 17-hectare nursery.

MLN screening facility

MLN is a devastating viral disease that can decimate farmers’ fields, causing premature plant death and unfilled, poorly formed maize ears, and can lead to up to 100 percent yield loss in farmers’ fields. Though known in other parts of the world for decades, the disease was first identified in eastern Africa in 2011. By 2015, MLN had rapidly spread across eastern Africa, including Kenya, Uganda, Tanzania, South Sudan, Rwanda, Democratic Republic of Congo and Ethiopia. CIMMYT scientists quickly discovered that almost all the commercial maize cultivars in eastern Africa were highly susceptible to the disease.

Against this backdrop, CIMMYT and KALRO recognized the urgent need for establishing a screening facility to provide MLN phenotyping service and effectively manage the risk of MLN on maize production through screening of germplasm and identifying MLN-resistant sources. The facility was built with funding support from the Bill & Melinda Gates Foundation and the Syngenta Foundation for Sustainable Agriculture, and inaugurated in September 2013.

Resistant and susceptible line at the Maize Lethal Necrosis facility. (Photo: CIMMYT)

“The MLN screening facility is a key regional resource in breeding for resistance to a devastating viral disease. The facility is indeed one of the key factors behind successful management of MLN and helping stem the tide of losses in eastern Africa,” said Director of the Global Maize Program at CIMMYT and One CGIAR Plant Health Initiative, B.M. Prasanna. “Fighting diseases like MLN, which do not respect political boundaries, requires strong regional and local collaboration. The successes achieved through the MLN Screening facility in the past 10 years embody that spirit of collaboration.” Indeed, farmers in the region now have access to over twenty genetically diverse, MLN-tolerant/resistant maize hybrids released in eastern and southern Africa.

The facility is the largest dedicated MLN screening facility in Africa and has evaluated over 230,000 accessions (over 330,000 rows of maize) from CIMMYT and partners, including over 15 national research programs, national and multinational seed companies. The facility covers 20 hectares, of which 17 hectares are used for field screening of germplasm. Dedicated laboratories and screen houses cover the remaining 3 hectares.

“MLN phenotyping service is conducted under stringent quarantine standards and the high-quality data is shared with all the CGIAR and public and private partners. The MLN screening service has helped breeding programs across the continent, aided in undertaking epidemiological research activities, and supported capacity building of students from diverse institutions, and regional stakeholders regarding MLN diagnosis and best management practices,” said CIMMYT’s Maize Pathologist in Africa, L.M. Suresh.

“The output of MLN resistant lines and hybrids has been remarkable,” said Director of Phytosanitary and Biosecurity at the Kenya Plant Health Inspectorate Service (KEPHIS), Isaac Macharia. “And the facility has strictly adhered to quarantine regulations.”

In Uganda, the MLN facility was crucial in the “release of the first-generation MLN tolerant hybrids and dissemination of MLN knowledge products that minimized the economic impact of MLN,” said the Director of Research of the National Crops Resources Research Institute, Godfrey Asea.

Peter Mbogo, maize breeder with Seed Co Group, said, “This is the only quarantine facility in the world where you can screen against MLN under artificial inoculation. It has been an excellent return on investment.”

Scientists convene in Kenya for intensive wheat disease training

Written by Julian Bañuelos-Uribe on . Posted in News.

An international cohort of scientists representing 12 countries gathered at the Kenya Agricultural and Livestock Research Organization (KALRO) station in Njoro for a comprehensive training course aimed at honing their expertise in wheat rust pathology.

The two-week program “Enhancing Wheat Disease Early Warning Systems, Germplasm Evaluation, Selection, and Tools for Improving Wheat Breeding Pipelines,” was a collaborative effort between CIMMYT and Cornell University and supported by the Wheat Disease Early Warning Advisory System (DEWAS) and Accelerating Genetic Gains in Maize and Wheat projects.

With a mission to bolster the capabilities of National Agricultural Research Systems (NARS), the training course attracted more than 30 participants from diverse corners of the globe.

Maricelis Acevedo, a research professor of global development at Cornell and the associate director of Wheat DEWAS, underscored the initiative’s significance. “This is all about training a new generation of scientists to be at the forefront of efforts to prevent wheat pathogens epidemics and increase food security all over the globe,” Acevedo said.

First initiated in 2008 through the Borlaug Global Rust Initiative, these training programs in Kenya have played a vital role in equipping scientists worldwide with the most up-to-date knowledge on rust pathogens. The initial twelve training sessions received support from the BGRI under the auspices of the Durable Rust Resistance in Wheat and Delivering Genetic Gain in Wheat projects.

This year’s training aims to prepare global scientists to protect against disease outbreaks that threaten wheat productivity in East Africa and South Asia. The course encompassed a wide array of practical exercises and theoretical sessions designed to enhance the participants’ knowledge in pathogen surveillance, diagnostics, modeling, data management, early warning assessments, and open science publishing. Presentations were made by DEWAS partners from the John Innes Centre, Aarhus University, the University of Cambridge and University of Minnesota.

(Photo: Borlaug Global Rust Initiative)

The course provided practical, hands-on experience in selecting and evaluating wheat breeding germplasm, race analysis and greenhouse screening experiments to enhance knowledge of rust diseases, according to Sridhar Bhavani, training coordinator for the course.

“This comprehensive training program encompasses diverse aspects of wheat research, including disease monitoring, data management, epidemiological models, and rapid diagnostics to establish a scalable and sustainable early warning system for critical wheat diseases such as rusts, fusarium, and wheat blast,” said Bhavani, wheat improvement lead for East Africa at CIMMYT and head of wheat rust pathology and molecular genetic in CIMMYT’s Global Wheat program.

An integral part of the program, Acevedo said, was the hands-on training on wheat pathogen survey and sample collection at KALRO.  The scientists utilized the international wheat screening facility at KALRO as a training ground for hot-spot screening for rust diseases resistance.

Daisy Kwamboka, an associate researcher at PlantVillage in Kenya, said the program provided younger scientists with essential knowledge and mentoring.

“I found the practical sessions particularly fascinating, and I can now confidently perform inoculations and rust scoring on my own,” said Kwamboka said, who added that she also learned how to organize experimental designs and the basics of R language for data analysis.

DEWAS research leaders Dave Hodson, Bhavani and Acevedo conducted workshops and presentations along with leading wheat rust experts. Presenters included Robert Park and Davinder Singh from the University of Sydney; Diane Sauders from the John Innes Centre; Clay Sneller from Ohio State University; Pablo Olivera from the University of Minnesota; Cyrus Kimani, Zennah Kosgey and Godwin Macharia from KALRO; Leo Crespo, Susanne Dreisigacker, Keith Gardner, Velu Govindan, Itria Ibba, Arun Joshi, Naeela Qureshi, Pawan Kumar Singh and Paolo Vitale from CIMMYT; Chris Gilligan and Jake Smith from the University of Cambridge; and Jens GrÞnbech Hansen and Mogens S. HovmÞller from the Global Rust Reference Center at Aarhus University.

“I thoroughly enjoyed the knowledge imparted by the invited experts, along with the incredible care they have shown us throughout this wonderful training.”

Narain Dhar, Borlaug Institute for South Asia 

For participants, the course offered a crucial platform for international collaboration, a strong commitment to knowledge sharing, and its significant contribution to global food security.

“The dedication of the trainers truly brought the training to life, making it incredibly understandable,” said Narain Dhar, research fellow at the Borlaug Institute for South Asia.

The event not only facilitated learning but also fostered connections among scientists from different parts of the world. These newfound connections hold the promise of sparking innovative collaborations and research endeavors that could further advance the field of wheat pathology.

Wheat pathogen surveillance system set to expand through new investment

Written by Julian Bañuelos-Uribe on . Posted in Press releases.

One of the world’s largest crop pathogen surveillance systems is set to expand its analytic and knowledge systems capacity to protect wheat productivity in food vulnerable areas of East Africa and South Asia.

Researchers announced the Wheat Disease Early Warning Advisory System (Wheat DEWAS), funded through a $7.3 million grant from the Bill & Melinda Gates Foundation and the United Kingdom’s Foreign, Commonwealth & Development Office, to enhance crop resilience to wheat diseases.

The project is led by David Hodson, principal scientist at CIMMYT, and Maricelis Acevedo, research professor of global development and plant pathology at Cornell University’s College of Agriculture and Life Sciences. This initiative brings together research expertise from 23 research and academic organizations from sub-Saharan Africa, South Asia, Europe, the United States and Mexico.

Wheat DEWAS aims to be an open and scalable system capable of tracking important pathogen strains. The system builds on existing capabilities developed by the research team to provide near-real-time model-based risk forecasts and resulting in accurate, timely and actionable advice to farmers. As plant pathogens continue to evolve and threaten global food production, the system strengthens the capacity of countries to respond in a proactive manner to transboundary wheat diseases.

The system focuses on the two major fungal pathogens of wheat known as rust and blast diseases. Rust diseases, named for a rust-like appearance on infected plants, are hyper-variable and can significantly reduce crop yields when they attack. The fungus releases trillions of spores that can ride wind currents across national borders and continents and spread devastating epidemics quickly over vast areas.

Wheat blast, caused by the fungus Magnaporte oryzae Tritici, is an increasing threat to wheat production, following detection in both Bangladesh and Zambia. The fungus spreads over short distances and through the planting of infected seeds. Grains of infected plants shrivel within a week of first symptoms, providing little time for farmers to take preventative actions. Most wheat grown in the world has limited resistance to wheat blast.

“New wheat pathogen variants are constantly evolving and are spreading rapidly on a global scale,” said Hodson, principal investigator for Wheat DEWAS. “Complete crop losses in some of the most food vulnerable areas of the world are possible under favorable epidemiological conditions. Vigilance coupled with pathogen-informed breeding strategies are essential to prevent wheat disease epidemics. Improved monitoring, early warning and advisory approaches are an important component for safeguarding food supplies.”

Previous long-term investments in rust pathogen surveillance, modelling, and diagnostics built one of the largest operational global surveillance and monitoring system for any crop disease. The research permitted the development of functioning prototypes of advanced early warning advisory systems (EWAS) in East Africa and South Asia. Wheat DEWAS seeks to improve on that foundation to build a scalable, integrated, and sustainable solution that can provide improved advanced timely warning of vulnerability to emerging and migrating wheat diseases.

“The impact of these diseases is greatest on small-scale producers, negatively affecting livelihoods, income, and food security,” Acevedo said. “Ultimately, with this project we aim to maximize opportunities for smallholder farmers to benefit from hyper-local analytic and knowledge systems to protect wheat productivity.”

The system has already proven successful, contributing to prevention of a potential rust outbreak in Ethiopia in 2021. At that time, the early warning and global monitoring detected a new yellow rust strain with high epidemic potential. Risk mapping and real-time early forecasting identified the risk and allowed a timely and effective response by farmers and officials. That growing season ended up being a production record-breaker for Ethiopian wheat farmers.

While wheat is the major focus of the system, pathogens with similar biology and dispersal modes exist for all major crops. Discoveries made in the wheat system could provide essential infrastructure, methods for data collection and analysis to aid interventions that will be relevant to other crops.

CIMMYT director general gains insights into breeding activities at Kiboko research facility

Written by Julian Bañuelos-Uribe on . Posted in News.

In a September 12 visit to CIMMYT facilities on the agricultural research station of the Kenya Agricultural and Livestock Research Organization (KALRO) at Kiboko, Bram Govaerts, CIMMYT director general, extolled the longstanding partnership with KALRO and suggested creating a platform to speed access of national researchers to improved breeding lines and populations.

Located 155 kilometers southeast of Nairobi in a dryland area better suited to raising cattle, goats, sheep, and camels than row crops, the Kiboko station comprises more than 15,000 hectares, with controlled irrigation systems, and has allowed efficient selection for tolerance to drought and insect pests in Africa-adapted maize, as well as the development of dryland crops such as pigeon pea, sorghum and groundnuts.

“Our recent work where we open up our maize and wheat research platform for dryland crops highlights CIMMYT efforts to diversify cropping options for farmers in challenging settings, enhancing their livelihoods and farming system resilience,” Govaerts said.

Govaerts, Das and Beyene listen to laboratory staff explain advances in climate-resilient maize. (Photo: Marion Aluoch/CIMMYT)

Yoseph Beyene, CIMMYT maize breeding coordinator for Africa, described collaborative efforts to speed the breeding and deployment of climate-resilient varieties. “This work covers maize breeding and seed system networks, participatory engagement with farming communities through on-farm trials, interactions and sharing with global partners, and documenting the adoption of stress tolerant maize in sub-Saharan Africa,” Beyene explained.

CIMMYT data show that drought-tolerant maize varieties derived from shared research of the Center, CGIAR and partners are being sown on more than 6 million hectares in 9 countries of eastern and southern Africa, benefitting an estimated 38 million people and producing additional grain worth as much as US$1.5 billion each year.

Beyene added that the expansion of on-farm testing to over 1,000 locations in eastern and southern Africa has enabled CIMMYT to assess preferences and genotype-by-environment interactions which, along with support from the seed systems team regarding small-scale farmers’ acceptance of drought-tolerant maize hybrids, have underpinned the development of successful hybrids.

A prominent stop on Govaerts’s tour was the maize double haploid (DH) facility established in Kiboko in 2013, with funding from the Bill & Melinda Gates Foundation.

Govaerts examines improved fall armyworm tolerant experimental varieties. (Photo: Marion Aluoch/CIMMYT)

Long used by private seed companies, the double haploid approach generates inbred lines that are completely “homozygous,” wherein genes on each pair of chromosomes are identical. It achieves this in a single year, compared to three to four years for conventional inbreeding, which can produce lines that may not be purely homozygous and are thus less useful for breeders.

“The facility offers double haploid line production services for organizations throughout Africa and is key to increasing genetic gains in maize breeding,” said Aparna Das, technical program manager for CIMMYT’s Global Maize Program.

Govaerts also visited the fall armyworm (FAW) artificial screening site and experiments in which CIMMYT scientists are evaluating five new FAW-tolerant experimental varieties for possible sharing with partners. In the fall armyworm screening facility, a team works to integrate and test ecofriendly crop management solutions against fall armyworm, critical research to safeguard agricultural production against this highly destructive insect pest.

“The excellent teamwork and facilities at Kiboko point up multiple opportunities for KALRO and CIMMYT to continue joint work that advances agricultural science to benefit farmers and consumers,” Govaerts concluded.

On-farm-Maize Select

Written by Leslie DomĂ­nguez on . Posted in Uncategorized.

The On-farm-Maize Select project will pilot a new genomics-driven selection method based on on-farm performance of Stage 1 maize breeding materials that is expected to deliver increased rates of genetic gain to the farmers through:

  • More accurate selection for the conditions of small-scale producers in Sub-Saharan Africa (SSA), especially women and the poorest farmers, who often apply fewer inputs.
  • Improved sampling of the diversity of on-farm conditions across the entire target population of environments (TPE).
  • Improved understanding of the diversity of socio-economic factors, agronomic management (especially by women), and environmental on-farm conditions across the TPE.
  • Genomic-assisted rapid recycling of parents (population improvement) to reduce breeding cycle time.
  • Improved social inclusion in breeding processes, leading to greater gender responsiveness and wider appeal of breeding outputs.

The hypothesis is that generating genomic estimated breeding values (GEBVs) based on on-farm phenotyping will lead both to increased selection accuracy for performance under farmer management, including challenging conditions that women and the poorest farmers face, and enable rapid cycling of parents by reducing the number of years of testing before new crosses are made. This hypothesis will be initially tested by estimating expected genetic gain on-station and on-farm based on the genetic correlation between on-station and gender-disaggregated on-farm performance of the same set of genotypes, as well as the repeatability of selection on-station versus on-farm. The value of on-farm versus on-station testing for estimating GEBVs for parent selection and early-stage advancement will be confirmed in two selected CIMMYT maize breeding pipelines (one each in eastern and southern Africa – EA-PP1 and SA-PP1) by comparing the performance on-farm of a sample of Stage 1 breeding lines from the second cycle of on-farm vs on-station selection. The efficacy and costs of undertaking on-farm genomic selection versus on-station selection at Stage 1 of the two selected breeding pipelines will also be evaluated.

Key Outputs

  • The genetic correlation between, and accuracy of estimation of, on-farm and on-station breeding values will be measured in terms of ability to predict performance under farmer management. This will enable comparison of the relative efficiency of direct selection on-farm versus indirect selection on-station. We expect that increased on-farm genetic gains will be achieved if the genetic correlation between on-farm and on-station performance is 0.8 or less.
  • Elite breeding populations improved for on-farm performance will be generated, and products extracted from them will be compared on-farm with those selected the same founder populations using conventional on-station selection (comparison of the products of the pipelines will not be possible until the second project phase, if approved).
  • Separate GEBVs generated for lines under the management of male and female farmers, with genetic correlations estimated to ensure that performance on female-managed farms is adequately weighted in selection indices.
  • Genomic-assisted on-farm sparse testing network, experimental design and capacity developed.
  • Improved representativeness of results due to enhanced gender and social inclusion approaches in the on-farm trial design.

Expected Outcomes

  • Greater rates of genetic gain delivered on-farm through more extensive sampling of TPEs
  • Improved accuracy of selection based on performance in farmers’ fields in the TPE.
  • Incorporation of farmer-preferred traits in selection decisions supports faster replacement of older hybrids with newer products.

Wheat Disease Early Warning Advisory System (DEWAS)

Written by Sarah McLaughlin on . Posted in Uncategorized.

The Wheat Disease Early Warning Advisory System (Wheat DEWAS) project is bringing new analytic and knowledge systems capacity to one of the world’s largest and most advanced crop pathogen surveillance systems. With Wheat DEWAS, researchers are building an open and scalable system capable of preventing disease outbreaks from novel pathogen strains that threaten wheat productivity in food vulnerable areas of East Africa and South Asia.

The system builds from capabilities developed previously by multi-institutional research teams funded through long-term investments in rust pathogen surveillance, modelling, and diagnostics. Once fully operationalized, the project aims to provide near-real-time, model-based risk forecasts for governments. The result: accurate, timely and actionable advice for farmers to respond proactively to migrating wheat diseases.

The Challenge

Farmers growing wheat face pathogen pressures from a range of sources. Two of the most damaging are the fungal diseases known as rust and blast. Rust is a chronic issue for farmers in all parts of the world. A study in 2015 estimated that the three rust diseases — stem, stripe and leaf — destroyed more than 15 million tons of wheat at a cost of nearly $3 billion worldwide. Wheat blast is an increasing threat to wheat production and has been detected in both Bangladesh and Zambia. Each of these diseases can destroy entire harvests without warning, wiping out critical income and food security for resource-poor farmers in vulnerable areas.

The Response

Weather forecasts and early-warning alerts are modern technologies that people rely on for actionable information in the case of severe weather. Now imagine a system that lets farmers know in advance when dangerous conditions will threaten their crop in the field. Wheat DEWAS aims to do just that through a scalable, integrated, and sustainable global surveillance and monitoring system for wheat.

Wheat DEWAS brings together research expertise from 23 research and academic organizations from sub-Saharan Africa, South Asia, Europe, the United States and Mexico.

Together, the researchers are focused on six interlinked work packages: 

Work package Lead Objectives
Data Management Aarhus University; Global Rust Reference Center
  • Maintain, strengthen and expand the functionality of the existing Wheat Rust Toolbox data management system
  • Create new modules within the Toolbox to include wheat blast and relevant wheat host information
  • Consolidate and integrate datasets from all the participating wheat rust diagnostic labs
  • Develop an API for the two-way exchange of data between the Toolbox and the Delphi data stack
  • Develop an API for direct access to quality-controlled surveillance data as inputs for forecast models
  • Ensure fair access to data
Epidemiological Models Cambridge University
  • Maintain operational deployment and extend geographical range
  • Productionalize code for long-term sustainability
  • Multiple input sources (expert, crowd, media)
  • Continue model validation
  • Ensure flexibility for management scenario testing
  • Extend framework for wheat blast
Surveillance (host + pathogen) CIMMYT
  • Undertake near-real-time, standardized surveys and sampling in the target regions
  • Expand the coverage and frequency of field surveillance
  • Implement fully electronic field surveillance that permits near real-time data gathering
  • Target surveillance and diagnostic sampling to validate model predictions
  • Map vulnerability of the host landscape
Diagnostics John Innes Centre
  • Strengthen existing diagnostic network in target regions & track changes & movement
  • Develop & integrate new diagnostic methodology for wheat rusts & blast
  • Align national diagnostic results to provide a regional & global context
  • Enhance national capacity for wheat rust & blast diagnostics
Information Dissemination and Visualization Tools PlantVillage; Penn State
  • Create a suite of information layers and visualization products that are automatically derived from the quality-controlled data management system and delivered to end users in a timely manner
  • Deliver near real time for national partners to develop reliable and actionable advisory and alert information to extension workers, farmers and policy makers
National Partner Capacity Building Cornell University
  • Strengthening National partner capacity on pathogen surveillance, diagnostics, modeling, data management, early warning assessment, and open science publishing

 

Wheat DEWAS partners 

Academic organizations: Aarhus University / Global Rust Reference Center; Bangabandhu Sheikh Mujibur Rahman Agricultural University; Cornell University / School of Integrative Plant Science, Plant Pathology & Plant-Microbe Biology Section; Hazara University; Penn State University / PlantVillage; University of Cambridge; University of Minnesota

 Research organizations: Bangladesh Wheat and Maize Research Institute (BWMRI); CIMMYT; Department of Agricultural Extension (DAE), Bangladesh; Ethiopian Agricultural Transformation Institute (ATI); Ethiopian Institute of Agricultural Research (EIAR); ICARDA; John Innes Centre (JIC); Kenya Agricultural and Livestock Research Organization (KALRO); National Plant Protection Centre (NPPC), Bhutan; Nepal Agricultural Research Council (NARC); Pakistan Agricultural Research Council (PARC); UK Met Office; Tanzania Agricultural Research Institute (TARI); The Sainsbury Laboratory (TSL) / GetGenome; U.S. Department of Agriculture, Agricultural Research Service; Zambia Agricultural Research Institute (ZARI)

Plant Health Innovation Platform at Kiboko, Kenya: integrating and testing eco-friendly solutions against fall armyworm

Written by Susan Otieno on . Posted in News.

Smallholder farmers and agricultural extension officers assessing Integrated Pest Management Packages (IPMs) treatments against fall armyworm at the Plant Health Innovation Platform at the KALRO Kiboko Research Station in Kenya. (Photo: Peter Kinyumu/CIMMYT)

CGIAR’s Plant Health Initiative (PHI) is testing integrated pest management (IPM) packages against fall armyworm (FAW) in partnership with smallholder farmers and agricultural extension officers at the Plant Health Innovation Platform at the Kenya Agricultural and Livestock Research Organization (KALRO) Kiboko Research Station in Kenya.

The IPM packages comprise 18 combinations of treatments, including maize varieties with native genetic resistance to FAW, biopesticides, biological control agents, push-pull system, and bean varieties.

“This is a unique opportunity to identify eco-friendly and cost-effective IPM packages against a major pest like FAW through participatory engagement of smallholder farmers and extension personnel,” said BM Prasanna, Global Maize Program Director at the International Maize and Wheat Improvement Center (CIMMYT) and CGIAR Plant Health Initiative Lead. “Also In our efforts against FAW, three FAW-tolerant maize hybrids have been recommended for release after national performance trials in Kenya.”

CIMMYT Global Maize Program Director and CGIAR Plant Health Initiative Lead, BM Prasanna explaining to smallholder farmers and agricultural extension officers; CGIAR’s Plant Health Initiative (PHI) testing of integrated pest management (IPM) packages against fall armyworm (FAW) at KALRO Kiboko, Kenya. (Photo: Susan Otieno/CIMMYT)

Participatory assessment

Participating farmers and extension personnel made their first assessment of the IPM combinations at the vegetative stage on November 8, 2022.

“With this second assessment on February 7, 2023, farmers and extension personnel are evaluating the same IPM combinations for their yield potential, which means the plants need to be not only healthy but also productive. The farmers are also looking at the quality of the maize ears, and the level of ear and kernel damage by the pest, if any. These assessments both at the vegetative and reproductive stages are critical for us to conclude this experiment and draw appropriate inferences,” Prasanna said.

Researchers will analyze the efficacy of the scoring of different IPM treatments by the farmers and from the vegetative/foliar and reproductive/harvest stages. In addition, scientists will conduct a cost-benefit analysis for each IPM treatment to identify relevant IPM packages that can be potentially scaled. Prasanna noted the initial scoring by the scientists and farmers were highly comparable.

The trials engaged farmers and extension workers from five different counties in Kenya. “The Plant Health Initiative is keen on co-creation and co-validation and taking an inclusive, participatory approach to innovations,” said Prasanna. He added that such an approach is vital for buy-in by the farmers, who need to be active partners in effectively scaling the selected IPM packages.

Farmers participating in the Field Day at the Innovation Platform applauded the initiative to involve them in validating solutions to manage FAW and expressed their eagerness to have the innovations in their hands. The farmers also had opportunities to ask questions, provide preliminary verbal feedback, and receive immediate clarification from the scientists to their queries.

”I know a farmer who has trained his two sons to go to every plant and kill the armyworm physically. You can imagine the time and energy that takes,” said Justice Kimeu, a farmer from Makueni County, Kenya. “Let the innovative methods we have seen here reach every farmer across the country.”

A participant giving his preliminary observations on the Integrated Pest Management Packages (IPMs) treatments against fall armyworm at the Plant Health Innovation Platform at the KALRO Kiboko Research Station in Kenya. (Photo by Peter Kinyumu/CIMMYT)

Plant Health Innovation Platform catalyzes collaboration

The Plant Health Innovation Platform at Kiboko brings together different innovations developed by the collaborating institutions: CIMMYT, KALRO, International Center for Insect Physiology and Ecology (icipe), AgBiTECH, Center for Agriculture and Bioscience International (CABI), and Farmfix Africa.

“Robust data is being generated on the efficacy and cost-benefit of various IPM combinations. After data analysis, 2-3 few specific IPM packages will be identified based on efficacy against FAW, cost effectiveness, affordability to smallholder farmers, and potential for rapid scale up,” Prasanna said.

Besides the FAW Innovation Platform at Kiboko, Kenya, the CGIAR Plant Health Initiative is operating eight other Innovation Platforms in Benin, Cameroon, Nigeria, Uganda, Lebanon, Philippines, Ecuador, and Colombia. Each of these platforms bring together diverse institutions engaged in developing game-changing solutions in managing key pests and diseases in the Initiative’s primary crops that include maize, banana, cassava, potato, sweet potato, rice, yam, sorghum, wheat, millets, legumes, and vegetables.

KALRO research station at Kiboko revamped to accelerate crop breeding

Written by Susan Otieno on . Posted in News.

CIMMYT Global Maize Program Director and CGIAR Plant Health Initiative Lead, BM Prasanna cutting a ribbon at the entrance of a new shed housing, marking the commissioning of five new seed drying machines courtesy of the of the Accelerating Genetic Gains (AGG) Project. (Photo: Susan Otieno/CIMMYT)

Kenya Agricultural and Livestock Research Organization (KALRO)’s research station at Kiboko, Kenya, where several partner institutions including the International Maize and Wheat Improvement Center (CIMMYT), conduct significant research activities on crop breeding and seed systems, is now equipped with five new seed drying machines along with a dedicated shed to house these units, a cold room for storing breeding materials, and an additional irrigation dam/reservoir. These infrastructural upgrades are worth approximately US $0.5 million.

During the commissioning of the new facilities on February 7, 2023, CIMMYT Global Maize Program Director, BM Prasanna thanked the donors, Crops to End Hunger (CtEH) Initiative and Accelerated Genetic Gains (AGG) project, that supported the upgrade of the research station, and recognized the strong partnership with KALRO.

“Today is a major milestone for CIMMYT, together with KALRO, hosting this center of excellence for crop breeding. This facility is one of the largest public sector crop breeding facilities in the world, with hundreds of hectares dedicated to crop breeding. These new facilities will enable CIMMYT and KALRO crop breeders to optimize their breeding and seed systems’ work and provide better varieties to the farming communities,” said Prasanna.

Kenya suffered one of its worst droughts ever in 2022, and the newly commissioned facilities will support expedited development of climate-resilient and nutritious crop varieties, including resistance to major diseases and pests.

Visitors at the KALRO research station in Kiboko, Kenya, looking at the newly commissioned cold room storage. (Photo: Susan Otieno/CIMMYT)

Improvements and enhancements

The efficiency of the seed driers capabilities to quickly reduce moisture content in seed from above 30% to 12% in two to three days, reducing the time taken for seed drying and allowing for more than two crop seasons per year in a crop like maize.

The additional water reservoir with a capacity of 16,500 cubic meters will eliminate irrigation emergencies and will also enhance the field research capacity at Kiboko. Reliable irrigation is essential for accelerating breeding cycles.

At the same time, the new cold room can preserve the seeds up to two years, preventing the loss of valuable genetic materials and saving costs associated with frequent regeneration of seeds.

KALRO Director General Eliud Kireger officiating the opening of the cold room storage facility at KALRO research station at Kiboko, Kenya. Looking on is CIMMYT Global Maize Program Director, BM Prasanna. (Photo: Susan Otieno/CIMMYT)

World-class research center

“The Kiboko Research Center is indeed growing into an elite research facility that can serve communities in entire sub-Saharan Africa through a pipeline of improved varieties, not only for maize but in other important crops. This will not only improve climate resilience and nutrition, but will contribute to enhanced food and income security for several million smallholder farmers,” said Prasanna.

KALRO Director General Eliud Kireger appreciated the establishment of the new facilities and thanked CIMMYT and its partners for their support.

“Today is a very important day for us because we are launching new and improved facilities for research to support breeding work and quality seed production. This research station is in Makueni County, a very dry area yet important place for research because there is adequate space, especially for breeding,” said Kireger. “We are significantly improving the infrastructure at Kiboko to produce and deliver better seed to our farmers.”

For more than three decades, CIMMYT has conducted research trials at the Kiboko Research Station, focusing on drought tolerance, nitrogen use efficiency, and resistance to pests and diseases, such as fall armyworm and stem borer. The maize Double Haploid (DH) facility established in 2013 at Kiboko, with the support of the Bill & Melinda Gates Foundation, offers DH line production service for organizations throughout Africa, and is key to increasing genetic gains in maize breeding.