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CRP Wheat Annual Report 2021

The newly released CGIAR Research Program on Wheat 2021 Technical Annual Report highlights joint achievements in making wheat more affordable, nutritious and available for consumers and producers worldwide.

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Over the course of ten years, WHEAT worked with hundreds of research and development partners worldwide to release high-yielding, disease-resistant, nutritious and climate-resilient wheat varieties, and efficient, sustainable wheat-based cropping systems.

This final report from 2021 shares important research on staple cereals’ role in global efforts towards food security, the number and distribution of wheat farms, the expected impact of climate change on wheat productivity, nitrogen-in-agriculture research, nutrition, and the most critical, immediate effects of COVID-19 on food systems, and more.

With its national partners, WHEAT released 70 new CGIAR-derived wheat varieties to farmers in 13 countries in 2021, and developed 18 innovations in the areas of genetics, biophysics, farm management, research and communication methods, or social sciences.

 

Wheat titan honored posthumously by India

India has conferred posthumously upon Sanjaya Rajaram, 2014 World Food Prize laureate and former wheat breeder and Director of the Wheat Program at the International Maize and Wheat Improvement Center (CIMMYT), its prestigious 2022 Padma Bhushan Award in “Science and Engineering” in recognition of “distinguished service of high order.”

Among the most successful crop breeders in history, Rajaram, who passed away in 2021, personally oversaw the development of nearly 500 high-yielding and disease-resistant wheat varieties that were grown on at least 58 million hectares in over 50 countries, increasing global wheat production by more than 200 million tons and especially benefiting hundreds of millions of the resource-poor whose diets and livelihoods depend on this critical crop. In India and the neighboring South Asian nations of Bangladesh, Nepal, and Pakistan, inhabitants consume more than 120 million tons of wheat and wheat-based foods each year.

“Dr. Rajaram was a true titan of wheat breeding and an inspiration for young researchers, training and mentoring more than 700 scientists from developing countries worldwide,” said Bram Govaerts, CIMMYT director general. “He was also a complete gentleman, comporting himself with modesty and grace despite his many honors and accomplishments; his first priority was helping and crediting others. Rajaram is an example today for all of us to keep working with the final stakeholder — the farmer — in mind.”

The rise from rural beginnings

Born on a small farm in District Varanasi, Uttar Pradesh, India, in 1943, Rajaram studied genetics and plant breeding at the Indian Agricultural Research Institute in New Delhi. After receiving his Ph.D. from the University of Sydney, he joined CIMMYT in 1969, working as a wheat breeder alongside Nobel Prize Laureate and CIMMYT scientist Norman Borlaug in Mexico. Recognizing his talent and initiative, Borlaug appointed Rajaram as head of CIMMYT’s wheat breeding program at just 29 years of age.

The Padma Bhushan Award was announced by President Ram Nath Kovind of India on the country’s Republic Day, January 26. In 2015, Rajaram received the Pravasi Bharatiya Samman award, the highest honor conferred on Indians overseas. In 2001 he accepted the Padma Shri award from the government of India and, in 1998, the Friendship Award from the government of China.

Sanjaya Rajaram (Photo: Xochil Fonseca/CIMMYT)
Sanjaya Rajaram (Photo: Xochil Fonseca/CIMMYT)

Though a plant breeder and scientist by profession, Rajaram used the platform of his 2014 World Food Prize to promote an expansive, integrated vision for agricultural development. “If we want to make a change, research won’t do it alone; we need to work directly with farmers and to train young agronomists, ensuring they have a broad vision to address the problems in farmers’ fields,” Rajaram said at a news conference in Mexico City in 2014.

Rajaram also served as Director of the Integrated Gene Management Program at the International Center for Agricultural Research in the Dry Areas (ICARDA) before formally retiring in 2008. In his retirement, he continued as a special scientific advisor to CIMMYT and ICARDA.

Longstanding partners pushing forward for farmers

“India’s agricultural research community is proud of the distinguished achievements of Dr. Rajaram,” said Trilochan Mohapatra, Director General of the Indian Council of Agricultural Research (ICAR) and Secretary of the Department of Agricultural Research and Education (DARE), of India’s Ministry of Agriculture and Farmers’ Welfare. “ICAR greatly appreciates its valuable collaborations with CIMMYT to help farmers grow better crops and conserve resources under increasingly challenging conditions.”

The partnership of India with CIMMYT harks back to the 1960s-70s, when Indian farmers tripled national wheat yields in a few years by growing Borlaug’s high-yield wheat varieties and adopting improved farming practices.

In 2011, India and CIMMYT jointly launched the Borlaug Institute for South Asia (BISA) to improve cropping systems and food security, helping farmers to confront climate change and natural resource scarcities, among other challenges.

S. Ayyappan, former ICAR Director General who signed the joint declaration of intent for BISA’s establishment in India, has been honored with the 2022 Padma Shri Award.

CIMMYT is a non-profit international agricultural research and training organization focusing on two of the world’s most important cereal grains, maize and wheat, and related cropping systems and livelihoods. Wheat varieties derived from CIMMYT and ICARDA research cover more than 100 million hectares — nearly two-thirds of the area sown to improved wheat worldwide — and bring benefits in added grain worth as much as $3.8 billion each year.

CRP Wheat Annual Report 2020

We are proud to present highlighted impacts from WHEAT’s research in our 2020 Annual Report, showcasing the shared accomplishments through global partnerships for the eighth year of the program.

Read the WHEAT 2020 Annual Report

Read a PDF version of the WHEAT 2020 Annual Report 

Read the WHEAT 2020 Technical Annual Report

In 2020, the COVID-19 crisis devastated communities, economies, and livelihoods, especially of the world’s most vulnerable populations. At the same time, climate change continued to threaten wheat systems around the world. Under unprecedented challenges, WHEAT scientists and partners responded swiftly, generating new research evidence, forming new partnerships, and improving access to conservation agriculture and farm mechanization technologies.

This web-based report focuses on some of the major impacts the program has had on sustainable intensification, gender and social inclusion, and technological innovations for more productive wheat-based farming. Although they are reported for 2020, these impacts reflect years of dedicated science and strong collaborative relationships with partners.

We are deeply grateful for our partners in the science, research, policymaking, and funding communities who have allowed us to continue our work in the face of urgent and powerful challenges. We hope you enjoy this year’s Annual Report as we look back upon our outcomes and achievements in 2020 and set our targets for the future.

Consider the seed

Seed viability test at the CIMMYT genebank. (Photo: Alfonso Cortés/CIMMYT)
Seed viability test at the CIMMYT genebank. (Photo: Alfonso Cortés/CIMMYT)

The conservation of plant genetic diversity through germplasm conservation is a key component of global climate-change adaptation efforts. Germplasm banks like the maize and wheat collections at the International Maize and Wheat Improvement Center (CIMMYT) may hold the genetic resources needed for the climate-adaptive crops of today and tomorrow.

But how do we ensure that these important backups are themselves healthy and not potential vectors of pest and disease transmission?

This was the question that animated “Germplasm health in preventing transboundary spread of pests and pathogens,” the second webinar in Unleashing the Potential of Plant Health, a CGIAR webinar series in celebration of the UN-designated International Year of Plant Health.

“Germplasm refers to the source plants of either specific cultivars or of unique genes or traits that can be used by breeders for improved cultivars,” program moderator and head of the Health and Quarantine Unit at the International Potato Center (CIP) Jan Kreuze explained to the event’s 622 participants. “If the source plant is not healthy, whatever you multiply or use it for will be unhealthy.”

According to keynote speaker Saafa Kumari, head of the Germplasm Health Unit at the International Center for Agricultural Research in the Dry Areas (ICARDA), we know of 1.3 thousand pests and pathogens that infect crops, causing approximately $530 billion in damages annually. The most damaging among these tend to be those that are introduced into new environments.

Closing the gap, strengthening the safety net

The CGIAR has an enormous leadership role to play in this area. According to Kumari, approximately 85% of international germplasm distribution is from CGIAR programs. Indeed, in the context of important gaps in the international regulation and standards for germplasm health specifically, the practices and standards of CGIAR’s Germplasm Health Units represent an important starting point.

“Germplasm health approaches are not necessarily the same as seed and plant health approaches generally,” said Ravi Khaterpal, executive secretary for the Asia-Pacific Association of Agricultural Research Institutions (APAARI). “Best practices are needed, such as CGIAR’s GreenPass.”

In addition to stronger and more coherent international coordination and regulation, more research is needed to help source countries test genetic material before it is distributed, according to Francois Petter, assistant director for the European and Mediterranean Plant Protection Organization (EPPO). Head of the CGIAR Genebank Platform Charlotte Lusty also pointed out the needed for better monitoring of accessions in storage. “We need efficient, speedy processes to ensure collections remain healthy,” she said.

Of course, any regulatory and technological strategy must remain sensitive to existing and varied social and gender relations. We must account for cultural processes linked to germplasm movement, said Vivian Polar, Gender and Innovation Senior Specialist with the CGIAR Research Program on Roots, Tubers and Bananas (RTB). Germplasm moves through people, she said, adding that on the ground “women and men move material via different mechanisms.”

“The cultural practices associated with seed have to be understood in depth in order to inform policies and address gender- and culture-related barriers” to strengthening germplasm health, Polar said.

The event was co-organized by researchers at CIP and the International Institute of Tropical Agriculture (IITA).

The overall webinar series is hosted by CIMMYT, CIP, the International Food Policy Research Institute (IFPRI), IITA, and the International Rice Research Institute (IRRI). It is sponsored by the CGIAR Research Program on Agriculture for Nutrition (A4NH), the CGIAR Gender Platform and the CGIAR Research Program on Roots, Tubers and Bananas (RTB).

The third of the four webinars on plant health, which will be hosted by CIMMYT, is scheduled for March 10 and will focus on integrated pest and disease management. 

Remembering the Legacy of Distinguished Wheat Breeder Sanjaya Rajaram

A leader of wheat breeding and later director of CIMMYT’s Global Wheat Program, Sanjaya Rajaram passed away at the age of 78.

Recognized with the World Food Prize in 2014, he personally oversaw the development of more than 480 high-yielding, disease-resistant varieties sown on 58 million hectares in 51 countries, increasing global wheat production by more than 200 million tons during his lifetime in diverse regions across the globe.

Read more: https://www.agribusinessglobal.com/agrochemicals/seeds-traits/remembering-the-legacy-of-distinguished-wheat-breeder-sanjaya-rajaram/

Honoring the life and legacy of Byrd C. Curtis

Byrd C. Curtis, director of CIMMYT's Global Wheat Program from 1982 to 1988. (Photo: CIMMYT)
Byrd C. Curtis, director of CIMMYT’s Global Wheat Program from 1982 to 1988. (Photo: CIMMYT)

The International Maize and Wheat Improvement Center (CIMMYT) sadly notes the passing of Byrd C. Curtis, former Director of the Global Wheat Program, on January 7. He was 95 years old and lived in Fort Collins, Colorado, USA, with his wife Eloise Curtis.

From his studies at Oklahoma State University to retiring after a fruitful international career with Colorado State University, Cargill Inc. and CIMMYT, he never got weary of sharing his passion for breeding better, tastier and sturdier wheat to improve peoples’ livelihoods.

He was an innovator at heart and his legacy will live on through Colorado State University’s wheat breeding program and the many wheat varieties he developed. Not only did he start Colorado State University’s wheat breeding program in 1963, but he also ensured that the varieties that were bred by his team reflected the needs of humanity for decades to come, such as the hard, red winter wheat variety named after himself.

Curtis worked at CIMMYT from 1982 and 1988 as Director of the Global Wheat Program. Together with his team, he worked to position CIMMYT as the leading international research-for-development and breeding organization for wheat for years to come.

“Byrd was very keen to build oral communication skills of scientists, which has been very helpful to me,” said Ravi Singh, Head of Global Wheat Improvement at CIMMYT. “He also initiated the Turkey-CIMMYT-ICARDA International Winter Wheat Improvement Partnership’s (IWWIP) winter wheat breeding program and even worked there in Turkey in his final year with CIMMYT to ensure it would take off well.”

Byrd was instrumental and showed tremendous foresight. IWWIP’s establishment in Turkey became first major breeding program within CGIAR that was hosted by a national program. He strongly supported the creation of the Wide Crossing Program. The synthetic wheat varieties developed in this program have had global impact on wheat improvement.

Aside from his remarkable technical legacy, Byrd had a knack for choosing the right people for the job. In the six years as Director of the Global Wheat Program, he hired scientists who held major roles in global wheat improvement: Ravi Singh, Distinguished Scientist and Head of Global Wheat Improvement; Wolfgang Pfeiffer, former leader of spring bread wheat, durum wheat, and triticale crop improvement; and Hans Braun, Director of the Global Wheat Program from 2004 to 2020.

“Byrd not only initiated the winter wheat program,” said former Global Wheat Program Director Hans Braun, who was hired by Byrd in 1983. “He was also director when the tropical wheat program was implemented in Thailand.” This program’s work increased yields up to 1.5 tons per hectare but ultimately did not convince Thai farmers. Nevertheless, Braun said, “One of the oddest experiences I’ve had was to see our winter wheat material from Turkey grown in the Thai jungle!”

After retiring from his professional life in 1991, Curtis and his wife Eloise moved back to Fort Collins, where his career started in the 1960s and where he will be remembered by his townspeople — and fellow athletes and gym-goers — for his determination and active lifestyle.

The CIMMYT community sends its deepest sympathies and wishes for peace to the Curtis family.

Shining a brighter light on adoption and diffusion

Farmer Roba Shubisha harvests an improved maize variety in Yubo village, Wondo Genet, Ethiopia. (Photo: Peter Lowe/CIMMYT)
Farmer Roba Shubisha harvests an improved maize variety in Yubo village, Wondo Genet, Ethiopia. (Photo: Peter Lowe/CIMMYT)

With almost all CGIAR centers represented in Addis Ababa, Ethiopia is considered to be a hub for CGIAR research, and the organization has been a long-term partner to the Ethiopian government when it comes to agriculture. The partnership between CGIAR and the national partners is said to be an exemplary one, with CGIAR serving as the source of new technologies and innovations and national partners contextualizing these products within their own country context. This is believed to have brought impacts that serve the people on the ground.

A new report by CGIAR’s Standing Panel on Impact Assessment (SPIA) indicates that CGIAR innovations have reached between 4.1 and 11 million Ethiopian households. The report — which assesses 52 agricultural innovations and 26 claims of policy influence — documents the reach of CGIAR-related agricultural innovations across the core domains of CGIAR research activity: animal agriculture; crop germplasm improvement; natural resource management; and policy research.

The study compiles comprehensive information on the past two decades of CGIAR research activities in Ethiopia. Using information from interviews with CGIAR research leaders, scientists, government officials, published studies and project documents, this ‘stocktaking’ exercise was used to identify the innovations which are potentially disseminated at scale. The study also employs novel data collection protocols and methods like visual aid protocols for identification of natural resource management innovations or DNA fingerprinting for crop variety identification for barley, maize and sorghum.

The study results show that although many innovations are being adopted by some farmers, only a few are reaching large numbers of households. The three innovations with the largest reach are soil and water conservation practices, improved maize varieties and crossbred poultry. The study also found out that there are synergies between innovations where households adopt two or more. For instance, a household which adopts CGIAR maize varieties is likely to also adopt recommended natural resource management practices.

This, according to the study, is the result of different categories of CGIAR research efforts — natural resource management and policy, crop breeding and livestock research, respectively. The scaling of these innovations can also be linked to supportive government policies, which in turn have been influenced by policy research, as indicated in the report.

A farmer walks through a maize field in Toga village, Hawassa, Ethiopia. (Photo: Peter Lowe/CIMMYT)
A farmer walks through a maize field in Toga village, Hawassa, Ethiopia. (Photo: Peter Lowe/CIMMYT)

CIMMYT’s footprint

The International Maize and Wheat Improvement Center (CIMMYT) has maintained a presence in Ethiopia for over 30 years and is committed to supporting long-term agricultural development in the country. As part of this effort, CIMMYT has contributed to an increase in maize and wheat production in Ethiopia, working with national partners to test and release improved varieties.

The maize breeding program started in 1988 through CIMMYT and EIAR collaboration and in 1993 BH-660 was released — the first hybrid maize variety derived from CIMMYT germplasm. According to the report, specific maize traits were researched through the Drought Tolerant Maize for Africa (DTMA) and Drought Tolerant Maize for Africa Seed Scaling (DTMASS) projects, and since 2012 the Nutritious Maize for Ethiopia (NuME) project has aimed to develop varieties with higher protein content. Overall, 54 maize varieties have been released in Ethiopia since 1990, and 34 of these are thought to contain CIMMYT-related germplasm. It is also noted that, in the past 20 years ten drought-tolerant varieties and eight quality protein maize (QPM) varieties have been released.

In terms of geographical spread, the study highlights that improved maize varieties derived from CGIAR germplasm were highly adopted in the regions of Harar and Dire Dawa, which account for 81% of adopters overall. Adoption rates were also high in Tigray (79.3% of households), Amhara and the Southern Nations, Nationalities, and Peoples’ Region (63% of households), and Oromia (58.4% of households).

The other important crop in Ethiopia is wheat, which is grown by up to 4.8 million farmers in the country, according to the 2019 Central Statistics Authority (CSA) report. The SPIA document indicates that CGIAR innovations have played great role in the release and uptake of improved wheat varieties. The work of the CGIAR Research Program on Wheat (WHEAT), for instance, has resulted in the release of eight rust-resistant varieties derived from CIMMYT germplasm that are still under production. Of the 133 varieties released since 1974, CIMMYT and the International Center for Agricultural Research in the Dry Areas (ICARDA) played a role in developing at least 80.

The report concludes that agricultural research carried out by CGIAR scientists and their national partners generates many new ideas for innovations that might help address pressing policy concerns. CGIAR’s contribution to Ethiopia’s agricultural development is complex and wide-ranging, and while some aspects cannot be accurately captured by survey data, this new source of adoption and diffusion data helps identify the scale and scope of CGIAR’s reach in Ethiopia.

Read the full report: Shining a brighter light: Comprehensive evidence on adoption and diffusion of CGIAR-related innovations in Ethiopia

About the Standing Panel on Impact Assessment

The Standing Panel on Impact Assessment (SPIA) is an external, impartial panel of experts in impact assessment appointed by the System Council and accountable to it. SPIA is responsible for providing rigorous, evidence-based, and independent strategic advice to the broader CGIAR System on efficient and effective impact assessment methods and practices, including those measuring impacts beyond contributions to science and economic performance, and on innovative ways to improve knowledge and capacity on how research contributes to development outcomes

Rust-resistant bread wheat varieties widely adopted in Ethiopia

Wheat fields in the Arsi highlands, Ethiopia, 2015. (Photo: CIMMYT/ Peter Lowe)
Wheat fields in the Arsi highlands, Ethiopia, 2015. (Photo: CIMMYT/ Peter Lowe)

A state-of-the-art study of plant DNA provides strong evidence that farmers in Ethiopia have widely adopted new, improved rust-resistant bread wheat varieties since 2014.

The results — published in Nature Scientific Reports — show that nearly half (47%) of the 4,000 plots sampled were growing varieties 10 years old or younger, and the majority (61%) of these were released after 2005.

Four of the top varieties sown were recently-released rust-resistant varieties developed through the breeding programs of the Ethiopian Institute for Agricultural Research (EIAR) and the International Maize and Wheat Improvement Center (CIMMYT).

Adoption studies provide a fundamental measure of the success and effectiveness of agricultural research and investment. However, obtaining accurate information on the diffusion of crop varieties remains a challenging endeavor.

DNA fingerprinting enables researchers to identify the variety present in samples or plots, based on a comprehensive reference library of the genotypes of known varieties. In Ethiopia, over 94% of plots could be matched with known varieties. This provides data that is vastly more accurate than traditional farmer-recall surveys.

This is the first nationally representative, large-scale wheat DNA fingerprinting study undertaken in Ethiopia. CIMMYT scientists led the study in partnership with EIAR, the Ethiopian Central Statistical Agency (CSA) and Diversity Array Technologies (DArT).

“When we compared DNA fingerprinting results with the results from a survey of farmers’ memory of the same plots, we saw that only 28% of farmers correctly named wheat varieties grown,” explained Dave Hodson, a principal scientist at CIMMYT and lead author of the study.

The resulting data helps national breeding programs adjust their seed production to meet demand, and national extension agents focus on areas that need better access to seed. It also helps scientists, policymakers, donors and organizations such as CIMMYT track their impact and prioritize funding, support, and the direction of future research.

“These results validate years of international investment and national policies that have worked to promote, distribute and fast-track the release of wheat varieties with the traits that farmers have asked for — particularly resistance to crop-destroying wheat rust disease,” said Hodson.

Ethiopia is the largest wheat producer in sub-Saharan Africa. The Ethiopian government recently announced its goal to become self-sufficient in wheat, and increasing domestic wheat production is a national priority.

Widespread adoption of these improved varieties, demonstrated by DNA fingerprinting, has clearly had a positive impact on both economic returns and national wheat production gains. Initial estimates show that farmers gained an additional 225,500 tons of production — valued at $50 million — by using varieties released after 2005.

The study results validate investments in wheat improvement made by international donor agencies, notably the Bill & Melinda Gates Foundation, the Ethiopian government, the UK Foreign, Commonwealth and Development Office (FCDO, formerly DFID), the US Agency for International Development (USAID) and the World Bank. Their success in speeding up variety release and seed multiplication in Ethiopia is considered a model for other countries.

“This is good news for Ethiopian farmers, who are seeing better incomes from higher yielding, disease-resistant wheat, and for the Ethiopian government, which has put a high national priority on increasing domestic wheat production and reducing dependence on imports,” said EIAR Deputy Director General Chilot Yirga.

The study also confirmed CGIAR’s substantial contribution to national breeding efforts, with 90% of the area sampled containing varieties released by Ethiopian wheat breeding programs and derived from CIMMYT and the International Center for Agricultural Research in the Dry Areas (ICARDA) germplasm. Varieties developed using germplasm received from CIMMYT covered 87% of the wheat area surveyed.

“This research demonstrates that DNA fingerprinting can be applied at scale and is likely to transform future crop varietal adoption studies,” said Kindie Tesfaye, a senior scientist at CIMMYT and co-author of the study. “Additional DNA fingerprinting studies are now also well advanced for maize in Ethiopia.”

This research is supported by the Bill and Melinda Gates Foundation and CGIAR Fund Donors. Financial support was provided through the “Mainstreaming the use and application of DNA Fingerprinting in Ethiopia for tracking crop varieties” project funded by the Bill & Melinda Gates Foundation (Grant number OPP1118996).

RELATED PUBLICATIONS:

Ethiopia’s Transforming Wheat Landscape: Tracking Variety Use through DNA Fingerprinting

FOR FURTHER INFORMATION OR INTERVIEW REQUESTS:

Dave Hodson, International Maize and Wheat Improvement Center (CIMMYT), d.hodson@cgiar.org

ABOUT CIMMYT:

The International Maize and What Improvement Center (CIMMYT) is the global leader in publicly-funded maize and wheat research and related farming systems. Headquartered near Mexico City, CIMMYT works with hundreds of partners throughout the developing world to sustainably increase the productivity of maize and wheat cropping systems, thus improving global food security and reducing poverty. CIMMYT is a member of the CGIAR System and leads the CGIAR programs on Maize and Wheat and the Excellence in Breeding Platform. The Center receives support from national governments, foundations, development banks and other public and private agencies. For more information visit staging.cimmyt.org

CRP Wheat Annual Report 2019

The CGIAR Research Program on Wheat (WHEAT) is proud to release its 2019 Annual Report, celebrating shared achievements through partnerships around the world for the seventh year of the program.

In this year’s report, we highlight cutting-edge work by researchers and partners — particularly our primary research partner, the International Center for Agricultural Research in the Dry Areas (ICARDA) — to help farmers grow wheat that is nutritious, resilient, and high-yielding, while decreasing environmental impact.

DNA fingerprinting, a smartphone-powered warning system, no-till innovations and the joint release of 50 new CGIAR-derived wheat varieties are just a few markers of success in a busy, challenging, and exciting year.

The threat of the current global pandemic highlights the crucial role wheat plays in the health and livelihoods of millions. We look forward to continued productive collaborations as we transition with our partners into an integrated, inclusive One CGIAR designed to meet the UN Sustainable Development Goals.

Read the WHEAT Annual Report 2019

Download a PDF Version of the WHEAT Annual Report 2019

Download the Technical WHEAT Annual Report 2019

Massive-scale genomic study reveals wheat diversity for crop improvement

Researchers working on the Seeds of Discovery (SeeD) initiative, which aims to facilitate the effective use of genetic diversity of maize and wheat, have genetically characterized 79,191 samples of wheat from the germplasm banks of the International Maize and Wheat Improvement Center (CIMMYT) and the International Center for Agricultural Research in the Dry Areas (ICARDA).

Read more here: https://phys.org/news/2020-09-massive-scale-genomic-reveals-wheat-diversity.html

Massive-scale genomic study reveals wheat diversity for crop improvement

A new study analyzing the diversity of almost 80,000 wheat accessions reveals consequences and opportunities of selection footprints. (Photo: Eleusis Llanderal/CIMMYT)
A new study analyzing the diversity of almost 80,000 wheat accessions reveals consequences and opportunities of selection footprints. (Photo: Keith Ewing)

Researchers working on the Seeds of Discovery (SeeD) initiative, which aims to facilitate the effective use of genetic diversity of maize and wheat, have genetically characterized 79,191 samples of wheat from the germplasm banks of the International Maize and Wheat Improvement Center (CIMMYT) and the International Center for Agricultural Research in the Dry Areas (ICARDA).

The findings of the study published today in Nature Communications are described as “a massive-scale genotyping and diversity analysis” of the two types of wheat grown globally — bread and pasta wheat — and of 27 known wild species.

Wheat is the most widely grown crop globally, with an annual production exceeding 600 million tons. Approximately 95% of the grain produced corresponds to bread wheat and the remaining 5% to durum or pasta wheat.

The main objective of the study was to characterize the genetic diversity of CIMMYT and ICARDA’s internationally available collections, which are considered the largest in the world. The researchers aimed to understand this diversity by mapping genetic variants to identify useful genes for wheat breeding.

From germplasm bank to breadbasket

The results show distinct biological groupings within bread wheats and suggest that a large proportion of the genetic diversity present in landraces has not been used to develop new high-yielding, resilient and nutritious varieties.

“The analysis of the bread wheat accessions reveals that relatively little of the diversity available in the landraces has been used in modern breeding, and this offers an opportunity to find untapped valuable variation for the development of new varieties from these landraces”, said Carolina Sansaloni, high-throughput genotyping and sequencing specialist at CIMMYT, who led the research team.

The study also found that the genetic diversity of pasta wheat is better represented in the modern varieties, with the exception of a subgroup of samples from Ethiopia.

The researchers mapped the genomic data obtained from the genotyping of the wheat samples to pinpoint the physical and genetic positions of molecular markers associated with characteristics that are present in both types of wheat and in the crop’s wild relatives.

According to Sansaloni, on average, 72% of the markers obtained are uniquely placed on three molecular reference maps and around half of these are in interesting regions with genes that control specific characteristics of value to breeders, farmers and consumers, such as heat and drought tolerance, yield potential and protein content.

Open access

The data, analysis and visualization tools of the study are freely available to the scientific community for advancing wheat research and breeding worldwide.

“These resources should be useful in gene discovery, cloning, marker development, genomic prediction or selection, marker-assisted selection, genome wide association studies and other applications,” Sansaloni said.


Read the study:

Diversity analysis of 80,000 wheat accessions reveals consequences and opportunities of selection footprints.

Interview opportunities:

Carolina Sansaloni, High-throughput genotyping and sequencing specialist, CIMMYT.

Kevin Pixley, Genetic Resources Program Director, CIMMYT.

For more information, or to arrange interviews, contact the media team:

Ricardo Curiel, Communications Officer, CIMMYT. r.curiel@cgiar.org

Rodrigo Ordóñez, Communications Manager, CIMMYT. r.ordonez@cgiar.org

Acknowledgements:

The study was part of the SeeD and MasAgro projects and the CGIAR Research Program on Wheat (WHEAT), with the support of Mexico’s Secretariat of Agriculture and Rural Development (SADER), the United Kingdom’s Biotechnology and Biological Sciences Research Council (BBSRC), and CGIAR Trust Fund Contributors. Research and analysis was conducted in collaboration with the National Institute of Agricultural Botany (NIAB) and the James Hutton Institute (JHI).

About CIMMYT:

The International Maize and What Improvement Center (CIMMYT) is the global leader in publicly-funded maize and wheat research and related farming systems. Headquartered near Mexico City, CIMMYT works with hundreds of partners throughout the developing world to sustainably increase the productivity of maize and wheat cropping systems, thus improving global food security and reducing poverty. CIMMYT is a member of the CGIAR System and leads the CGIAR programs on Maize and Wheat and the Excellence in Breeding Platform. The Center receives support from national governments, foundations, development banks and other public and private agencies. For more information visit staging.cimmyt.org.

3 climate-resilient food solutions for smallholder farmers

While COVID-19 is exacerbating an existing hunger crisis, authors highlight three of the most impactful research and development successes from the past few years that help smallholder farmers cope with climate change and bolster food security.

The first is CIMMYT’s program to develop drought-tolerant maize varieties with support from the Bill & Melinda Gates Foundation, successfully developing hundreds of new varieties that boost farmers’ yields and incomes, directly improving millions of lives.

Read more here: https://www.greenbiz.com/article/3-climate-resilient-food-solutions-smallholder-farmers

Building resistance in wheat: International collaboration fights Septoria tritici blotch disease

Phenotypic selection of resistant lines (Ms. H. Kouki Field technician and consultant A. Yahyaoui) at the Septoria Precision Phenotyping Platform at Kodia/INGC. (Photo: Septoria Precision Phenotyping Platform)

Tunisia has been a major durum wheat producer and consumer since Roman times, a crop used now for couscous, bread and pasta dishes throughout North Africa and the Mediterranean Basin.

However, a persistent disease known as Septoria tritici blotch (STB) has been threatening durum wheat harvests across the country thanks to its increasing resistance to fungicides and adaptability to harsher climatic conditions. The disease, which is caused by the fungus Zymoseptoria tritici, thrives under humid conditions and can cause up to 60% yield loss in farmers’ fields.

To help fight this disease, the International Maize and Wheat Improvement Center (CIMMYT) established the Septoria Precision Phenotyping Platform in collaboration with the Institution of Agricultural Research and Higher Education of Tunisia (IRESA) and the International Center for Agricultural Research in the Dry Areas (ICARDA) in Tunisia in 2015.

The platform aims to accelerate the transfer of STB resistance genes into elite durum wheat lines from national and international breeding programs, particularly CIMMYT and ICARDA breeding programs. Researchers at the platform have tested an impressive diversity of durum wheat lines for resistance to the disease from research institutes across Tunisia, Morocco, Algeria, Mexico, France, Italy, the UK, USA and Canada.

STB field reactions showing typical necrotic symptoms containing pycnidia on an infected adult plant leaf of wheat. (Photo: Septoria Precision Phenotyping Platform)

“New and more virulent strains of the pathogen are constantly emerging, which results in previously resistant wheat varieties becoming more susceptible,” said Sarrah Ben M’Barek, head of the laboratory at the Septoria Precision Phenotyping platform.

Field phenotyping – the use of field-testing to identify desired plant traits — is the heart of the platform. Scientists can test as many as 30,000 plots each year for STB resistance.

Evaluations are conducted at two main field research stations managed by the Regional Field Crop Center (CRRGC) and the National Institute of Field Crops (INGC), based at two major hotspots for the disease in Beja and Kodia. This work is complemented by laboratory research at the National Agronomic Institute of Tunisia (INAT) at Tunis.

“The platform plays a critical role in identifying STB resistant wheat germplasm and characterizing the resistance genes they possess. These resistant sources be can further utilized in hybridization schemes by durum wheat breeders worldwide to develop durable resistant varieties,” explained CIMMYT consultant and platform coordinator Amor Yahyaoui.

With the help of data from the platform, breeders hope to combine multiple resistance genes in an individual variety to create a genetically complex “lock” whose combination the fungus will not easily break.

According to Ben M’Barek, the huge genetic diversity in wheat and its ancestors has helped breeders to develop new varieties for almost a century. However, the adoption of new varieties has typically been slow.

Farmers in Tunisia traditionally rely on fungicides to manage the disease. However, with the pathogen recently becoming more resistant to fungicides and more adaptive to harsher climatic conditions, interest in STB resistant varieties is increasing.

Field disease reactions of a susceptible wheat cultivar. (Photo: Septoria Precision Phenotyping Platform)

A hub for training and collaboration

The platform is also a hub for training and capacity development for national and international scientists, field research and lab. assistants, students and farmers. It brings together research staff and technicians from different institutions within Tunisia including the CRRGC, INGC, the National Institute of Agricultural Research of Tunisia (INRAT), INAT and the University of Jendouba.

Farmer’s organizations and regional extension services, as well as private organizations such as Comptoir Multiservices Agricoles (CMA), seed and chemical companies also collaborate with the platform. The result is a team effort that has generated a tremendous wealth of data, made only possible through the dedication of Yahyaoui, said Ben M’Barek.

“Spending a few days at the platform each year is a like a crash course on STB resistance. All subjects are covered and great experts around the world come together to discuss all details of this host-pathogen interaction,” said Filippo Bassi, senior durum wheat breeder at ICARDA.

“Sending young scientists to spend some time at the platform ensures that they learn all about the mechanisms of resistance and take them back to their home country to deploy them in their own breeding programs. It is like a true university for STB.”

Yet, the platform still has a lot of work to do, according to Ben M’Barek. Scientists at the platform are now working on raising awareness on crop and pest management such as integrated management approaches amongst farming communities, setting up on-farm field trials and developing disease early warning surveillance.

Next year the platform will provide a unique podium for students, academics and researchers to exchange ideas and research findings on cereal leaf blight diseases. The International Symposium on Cereal Leaf Blights will take place on May 19-21, 2021 in Tunisia. Details can be found here.

The Septoria Precision Phenotyping Platform is led by the International Maize and Wheat Improvement Center (CIMMYT), in collaboration with the Institution of Agricultural Research and Higher Education of Tunisia (IRESA) and the International Center for Agricultural Research in the Dry Areas (ICARDA) and is supported by the CGIAR Research Program in Wheat (WHEAT).

Septoria Precision Phenotyping Platform at Oued Béja (CRRGC). (Photo: Gert Kema/Wageningen University)

ICARDA’s Mustapha El-Bouhssini explains how crop pests are moving in a warming world

Insect resistance in plants is needed now more than ever. The UN, which has named 2020 as the International Year of Plant Health, estimates that almost 40% of food crops are lost annually due to plant pests and diseases.

Earlier this month, a group of wheat breeders and entomologists came together for the 24th Biannual International Plant Resistance to Insects (IPRI) Workshop, held at the International Maize and Wheat Improvement Center (CIMMYT).

We caught up with Mustapha El-Bouhssini, principal scientist at the International Center for Agricultural Research in the Dry Areas (ICARDA) to discuss insect pests and climate change. He explains how pests such as the Hessian fly — a destructive wheat pest which resembles a mosquito — and the chickpea pod borer are extending their geographical ranges in response to rising temperatures.

New international partnership to identify and develop resistance to dangerous wheat disease

CIMMYT and JAAS representatives signed the agreement to establish a screening facility for Fusarium head blight in Nanjing, China.
CIMMYT and JAAS representatives signed the agreement to establish a screening facility for Fusarium head blight in Nanjing, China.

The CGIAR Research Program on Wheat (WHEAT), led by the International Maize and Wheat Improvement Center (CIMMYT) and the International Center for Agriculture in the Dry Areas (ICARDA), recently announced a partnership with the Jiangsu Academy of Agricultural Sciences (JAAS) in China to open a new screening facility for the deadly and fast-spreading fungal wheat disease Fusarium head blight, or FHB.

The new facility, based near the JAAS headquarters in Nanjing, aims to capitalize on CIMMYT’s world-class collection of disease-resistant wheat materials and the diversity of the more than 150,000 wheat germplasm in its Wheat Germplasm Bank to identify and characterize genetics of sources of resistance to FHB and, ultimately, develop new FHB-resistant wheat varieties that can be sown in vulnerable areas around the world.

“The participation of JAAS in the global FHB breeding network will significantly contribute to the development of elite germplasm with good FHB resistance,” said Pawan Singh, head of wheat pathology for CIMMYT.

“We expect that in 5 to 7 years, promising lines with FHB resistance will be available for deployment by both CIMMYT and China to vulnerable farmers, thanks to this new station.”

Fusarium head blight is one of the most dangerous wheat diseases. It can cause up to 50% yield loss and produce severe mycotoxin contamination in food and feed, which affects farmers in the form of increased health care and veterinary care costs, and reduced livestock production.

Even consuming low to moderate amounts of Fusarium mycotoxins may impair intestinal health, immune function and fitness. Deoxynivalenol (DON), a mycotoxin the fungus inducing FHB produces, has been linked to symptoms including nausea, vomiting, and diarrhea. In livestock, Fusarium mycotoxin consumption exacerbates infections with parasites, bacteria and viruses — such as occidiosis in poultry, salmonellosis in pigs and mice, colibacillosis in pigs, necrotic enteritis in poultry and swine respiratory disease.

In China, the world’s largest wheat producer, Fusarium head blight is the most important biotic constraint to production.

The disease is extending quickly beyond its traditionally vulnerable wheat growing areas in East Asia, North America, the southern cone of South America, Europe and South Africa — partly as a result of global warming, and partly due to otherwise beneficial, soil-conserving farming practices such as wheat-maize rotation and reduced tillage.

“Through CIMMYT’s connections with national agricultural research systems in developing countries, we can create a global impact for JAAS research, reaching the countries that are expected to be affected the expansion of FHB epidemic area,” said Xu Zhang, head of Triticeae crops research group at the Institute of Food Crops of the Jiangsu Academy of Agricultural Sciences.

The new collaborative effort will target Fusarium head blight research but could potentially expand to research on other wheat diseases as well. Wheat blast, for example, is a devastating disease that spread from South America to Bangladesh in 2016. Considering the geographical closeness of Bangladesh and China, a collaboration with CIMMYT, as one of the leading institutes working on wheat blast, could have a strong impact.

Although the platform is new, the two institutions have a longstanding relationship. The bilateral collaboration between JAAS and CIMMYT began in early 1980s with a shuttle breeding program between China and Mexico to speed up breeding for Fusarium head blight resistance. The two institutions also conducted extensive germplasm exchanges in the 1980s and 1990s, which helped CIMMYT improve resistance to Fusarium head blight, and helped JAAS improve wheat rust resistance.

Currently, JAAS and CIMMYT are working on Fusarium head blight under a project funded by the National Natural Science Foundation of China called “Elite and Durable Resistance to Wheat Fusarium Head Blight” that aims to deploy resistance genes/QTL in Chinese and CIMMYT germplasm and for use in wheat breeding.

This research is supported by CGIAR Fund Donors.


INTERVIEW OPPORTUNITIES:

Xinyao He, Wheat Pathologist and Geneticist, Global Wheat Program, CIMMYT. x.he@cgiar.org, +52 55 5804 2004 ext. 2218

FOR MORE INFORMATION, CONTACT THE MEDIA TEAM:

Marcia MacNeil, Communications Officer, CGIAR Research Program on Wheat. m.macneil@cgiar.org, +52 55 5804 2004 ext. 2070.

Rodrigo Ordóñez, Communications Manager, CIMMYT. r.ordonez@cgiar.org, +52 55 5804 2004 ext. 1167.

ABOUT CIMMYT:

The International Maize and Wheat Improvement Center (CIMMYT) is the global leader in publicly-funded maize and wheat research and related farming systems. Headquartered near Mexico City, CIMMYT works with hundreds of partners throughout the developing world to sustainably increase the productivity of maize and wheat cropping systems, thus improving global food security and reducing poverty. CIMMYT is a member of the CGIAR System and leads the CGIAR Research Programs on Maize and Wheat and the Excellence in Breeding Platform. The Center receives support from national governments, foundations, development banks and other public and private agencies. For more information, visit staging.cimmyt.org.

ABOUT JAAS:

Jiangsu Academy of Agricultural Sciences (JAAS), a comprehensive agricultural research institution since 1931, strives to make agriculture more productive and sustainable through technology innovation. JAAS endeavors to carry out the Plan for Rural Vitalization Strategy and our innovation serves agriculture, farmers and the rural areas. JAAS provide more than 80% of new varieties, products and techniques in Jiangsu Province, teach farmers not only to increase yield and quality, but also to challenge conventional practices in pursuit of original ideas in agro-environment protection. For more information, visit home.jaas.ac.cn/.