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The importance of germplasm in protecting nature

At COP15, Sarah Hearne gives an overview of the CGIAR Allele Mining Initiative projects and their potential role in conserving biodiversity and nature. (Photo: Michael Halewood/Alliance of Bioversity International and CIAT)

Prioritizing the protection of biodiversity is an essential part of mitigating and adapting to the effects of climate change and global warming. At the 15th meeting of the Conference of the Parties to the UN Convention on Biological Diversity (CBD) (COP15), held between December 7-19 in Montreal, Canada, emphasis was placed on the important role of nature in meeting the Sustainable Development Goals (SDGs), proposing the adoption of a bold global biodiversity framework that addresses the key drivers of nature loss to secure health and wellbeing for humanity and for the planet.

On December 7, scientists from the International Maize and Wheat Improvement Center (CIMMYT), together with colleagues from CGIAR research centers and the secretariat of the International Treaty on Plant Genetic Resources for Food and Agriculture, presented at a COP15 side event on how Digital sequence information (DSI) is changing the way genetic resources are used in agricultural research and development and implications for new benefit-sharing norms.

The session, organized by the CGIAR Initiative on Genebanks explored the role of DSI to conserve crop and livestock genetic diversity and explore and utilize that diversity in plant and animal breeding programs.

Attendees at the COP15 side event on DSI discover how genetic resources are used in research and development for agriculture. (Photo: Michael Halewood/Alliance of Bioversity International and CIAT)

Carolina Sansaloni, wheat germplasm bank curator and genotyping specialist, illustrated how DSI is being used in the CIMMYT wheat collection to analyze structure, redundancies, and gaps, further detailing how generation and use of DSI to conduct similar analyses within national genebanks in Latin America is being supported through collaborative efforts of CIMMYT and the Alliance of Bioversity and CIAT.

CIMMYT principal scientist Sarah Hearne focused on the application of DSI to interrogate broad swathes of crop genetic diversity for potential climate change adaptation, providing examples of work from the Allele Mining Initiative projects, Mining Useful Alleles and Fast Tracking Climate Solutions, alongside earlier work funded by the Mexican Government.

The take-home message was that genetic diversity and germplasm bank collections, when explored at “global scale” with modern tools and diverse partnerships, offer a powerful resource in the efforts to mitigate the impacts of climate change. This potential is only realized through appropriate generation and sharing of DSI generated from collections of many countries of origin.

Sansaloni and Hearne also contributed to a discussion paper, titled “Digital sequence information is changing the way genetic resources are used in agricultural research and development: implications for new benefit sharing norms”. This article, developed by scientists and germplasm law experts from across the CGIAR, provides a more detailed assessment of CGIAR use of DSI and the benefit sharing options being considered by the Contracting Parties to the Convention on Biological Diversity.

CIMMYT hosts third workshop of the Community of Practice for Latin America and the Caribbean

Attendees of the third workshop of the Community of Practice for Latin America and the Caribbean outside CIMMYT headquarters, Mexico. (Photo: CIMMYT)

From November 14 to 18, the International Maize and Wheat Improvement Center (CIMMYT) and the Alliance of Bioversity International and CIAT hosted the third workshop of the Community of Practice for Latin America and the Caribbean on the use of genomic and digital tools for the conservation and use of Genetic Resources for Food and Agriculture (GRAA).

The workshop, attended by 33 participants from 14 countries, was held at CIMMYT headquarters and highlighted topics such as the analysis of genotypic data derived from the DArTseq platform and the analysis of gaps in germplasm collections.

“It was very gratifying to be able to form this Latin American network of germplasm banks together with our colleagues from the Alliance of Bioversity International and CIAT,”said Carolina Sansaloni, Wheat Germplasm Bank Curator & Genotyping Specialist. “Training and knowledge exchange among germplasm banks is essential for better conservation, exploration and utilization of genetic resources in each country.”

Some of the participants shared the following comments and feedback:

  • “Excellent initiative, it is a fundamental support for the strengthening of plant genetic resources conservation systems and the creation of international collaborative networks. Thanks to CIMMYT and the Alliance of Bioversity International and CIAT for the invitation.” Mexico’s National Institute for Forestry, Agriculture and Livestock Research (INIFAP)
  • “Excellent workshop, a very important space for the exchange of knowledge and experiences, it also allows the formation of collaborative work networks between institutions and professionals from different countries with related research.” Escuela de Ciencias Agrarias, Universidad Nacional Costa Rica
  • “This workshop has allowed me to get in contact with colleagues from Latin America and to open the possibility of working together to advance in the characterization and contribute to the conservation of the collections we manage.” Instituto Nacional de TecnologĂ­a Agropecuaria, Argentina
  • “This has been a very profitable week for me as curator of the germplasm bank in Brazil. I learnt new concepts and tools that will generate advances in my work.” Brazilian Agricultural Research Corporation (EMBRAPA)

This workshop would not have been possible without the support of the CGIAR’s Genebank Initiative, DivSeek International and Analitek-Illumina.

CIMMYT at COP27

COP27, the UN Climate Change Conference for 2022, took place this year in Sharm El-Sheikh, Egypt, between November 6-18. Scientists and researchers from the International Maize and Wheat Improvement Center (CIMMYT) represented the organization at a wide range of events, covering gender, genebanks, soil health, and digital innovations.

Gender and food security

In an ICC panel discussion on Addressing Food Security through a Gender-Sensitive Lens on November 7, Director General Bram Govaerts presented on CIMMYT’s systems approach to address gender gaps in agriculture. This event formed part of the ICC Make Climate Action Everyone’s Business Forum, which aimed to bring together experts to determine solutions to the planet’s biggest environmental challenges.

Govaerts highlighted the importance of extension and training services targeting female farmers, particularly those delivered by women communicators. This can be achieved through training female leaders in communities, which encourages other women to adopt agricultural innovations. He also emphasized the obstacles to global food security caused by conflict, climate change, COVID-19, and the cost-of-living crisis, which will in turn create more challenges for women in agriculture.

The role of CGIAR genebanks in a climate crisis

Govaerts and Sarah Hearne, principal scientist, introduced the Agriculture Innovation Mission for Climate (AIM4C) innovation sprint on Fast Tracking Climate Solution from Genebank Collections, at a virtual side event organized by the Foundation for Food & Agriculture Research (FFAR).

Hearne explained that the development of current and future varieties is dependent upon breeders sourcing and repackaging native genetic variation in high value combinations. The CGIAR network of germplasm banks holds vast collections of crops that are important for global food and feed supplies. Among the diversity in these collections is currently unexplored and unused native variation for climate adaptation.

Through strong partnerships, multi-disciplinary activities, and the harnessing of diverse skillsets in different areas of applied research and development work, the sprint will help to identify genetic variations of potential value for climate change adaptation and move that variation into products that breeders globally can adopt in their variety development work. Through these efforts, the sprint improves access to specific genetic variation currently sat in the vaults of germplasm banks and facilitates crop improvement programs to develop the varieties that farmers demand.

The sprint is a clear example of the shift in paradigms we are looking for, so that people in the year 2100 know we took the right decisions in 2022 for them to live in a better world, said Govaerts. He continued by emphasizing the need for the initiative to be integrated within the systems it aims to transform, and the importance of accelerating farmers’ access to seeds.

The initiative is only possible because of the existence of the genebank collections that have been conserved for humanity, and due to cross-collaboration across disciplines and sharing of data and resources.

Addressing soil fertility management

Tek Sapkota, senior scientist, presented at Taking Agricultural Innovation to the Next Level to Tackle the Climate Crisis, the AIM4C partner reception on November 11, which gathered critical actors committed to making agriculture one of the most impactful climate solutions. Hosted on the one-year anniversary of the AIM4C launch at COP26 and on the eve of the COP27 day on adaptation and agriculture, the event was a celebration of progress made to date to address the climate crisis by 2025.

Along with 20 partners, CIMMYT submitted an AIM4C innovation sprint on climate-resilient soil fertility management by smallholders in Africa, Asia, and Latin America, which was announced at COP27 alongside other sprints.

Sapkota, who leads a project that is part of CIMMYT’s AIM4C innovation sprint submission, presented alongside the Minister of Climate Change and Environment from the United Arab Emirates, the Secretary of Agriculture for the United States, and the Regional Director for Central Asia, West Asia and North Africa at CGIAR.

Digital solutions for sustainable systems

Tharayil Shereef Amjath Babu, agricultural economist in modeling and targeting, hosted an event on Accelerating Digital Climate Services for resilient food systems in the Global South, exploring the work of two CGIAR Initiatives: Securing the Food Systems of Asian Mega-Deltas (AMD) for Climate and Livelihood Resilience and Transforming Agrifood Systems in South Asia (TAFSSA) on November 17.

In the Global South, farmers are being affected by unreliable weather patterns caused by climate change, which means they can no longer rely on their traditional knowledge. However, demand climate services can fill this vacuum, enabling meteorological agencies to produce accurate climate information, co-create digital climate services for agricultural systems, and support sustainable and inclusive business models.

Cover photo: A CIMMYT staff member at work in the maize active collection in the Wellhausen-Anderson Plant Genetic Resources Center, as featured in a session on Fast Tracking Climate Solution from Genebank Collections at COP27. (Photo: Xochiquetzal Fonseca/CIMMYT)

CIMMYT delivers seed to Svalbard Global Seed Vault

The Ambassador of Mexico to Norway, Ulises Canchola Gutiérrez, delivers a box of CIMMYT maize and wheat varieties to the Svalbard Global Seed Vault. (Photo: Petra Pajdakovic/Crop Trust)

The Ambassador of Mexico to Norway, Ulises Canchola Gutiérrez, delivered a deposit from the International Maize and Wheat Improvement Center (CIMMYT) to the Svalbard Global Seed Vault on October 12.

CIMMYT was the ninth depositor in the Seed Vault in 2022, with a contribution of 263 accessions of maize and 3,548 accession of wheat.

“Professionally, I am pleased to carry out this activity that contributes to the conservation of genetic resources and guarantees food security of two of the major crops that feed the world,” said Rocio Quiroz, assistant research associate at CIMMYT. “When we prepare a shipment as a team, it is extraordinary because we contribute to the perpetuity of each accession deposited in the vault. Very few people have the privilege of doing so.”

Maize and wheat seeds begin their journey to the Seed Vault from CIMMYT Headquarters in Texcoco, near Mexico City, on September 22. (Photo: Francisco AlarcĂłn/CIMMYT)

What is the Seed Vault?

The Seed Vault is a genebank collection that holds duplicates of seeds from more than 1,700 genebanks around the world, playing the role of a backup collection. By protecting these varieties from catastrophic loss, the Seed Vault contributes towards food security for future generations.

Owned by Norway and managed in partnership between the Norwegian Ministry of Agriculture and Food, NordGen, and the Crop Trust, the Seed Vault currently holds 1,165,041 seed varieties, with capacity for millions more.

In 2020, CIMMYT was the largest contributor, providing 173,779 maize and wheat accessions from 131 countries.

Colleagues from CIMMYT’s germplasm bank prepare a delivery of 263 accessions of maize and 3,548 accession of wheat. (Photo: Francisco Alarcón/CIMMYT)

How is germplasm stored at CIMMYT?

CIMMYT’s own germplasm bank contains approximately 150,000 unique collections of wheat seed and its ancestors and is the largest unified collection in the world for a single crop.

For maize, the germplasm bank contains more than 28,000 samples, including the world’s largest collection of maize landraces, representing nearly 90% of maize diversity in the Americas.

Carolina Sansaloni, manager of the wheat genebank at CIMMYT, said, “I am proud of all CIMMYT germplasm bank staff that made a great effort to send an additional 3,800 accessions to the Svalbard as safety duplications. This contribution is for the food security of humanity.”

Fast Tracking Climate Solutions from CGIAR Germplasm Banks

The Fast Tracking Climate Solutions from CGIAR Germplasm Banks project, led by the International Maize and Wheat Improvement Center (CIMMYT), is expanding the use of common bean and maize biodiversity, held in trust for humanity in the genebanks of CGIAR, to develop the raw ingredients of new climate-smart crop varieties for small-scale farmers in the Northern Triangle: Guatemala, Honduras and El Salvador.

Aligned with, and building upon the Mining Useful Alleles for Climate Change Adaptation from CGIAR Genebanks project, this project aims to identify common bean accessions in genebanks that contain alleles, or gene variations, responsible for characteristics such as heat, drought or salt tolerance, and to facilitate their use in breeding climate-resilient crop varieties. Additionally, within the maize work, the project focuses on transferring valuable novel genetic variation identified from landraces under the aligned project into breeding materials suitable for variety development in the Northern Triangle.

Through this project, breeders will learn how to use genebank materials more effectively and efficiently to develop climate-smart versions of important food crops.

Building on ten years of support to CIMMYT from the Mexican government, CGIAR Trust Fund contributors, the UK Biotechnology and Biological Sciences Research Council, and the ongoing Mining Useful Alleles for Climate Change Adaptation from CGIAR Genebanks project, this project combines the use of cutting-edge technologies and approaches, high-performance computing, GIS mapping, and new plant breeding methods to identify and use accessions with high value for climate-adaptive breeding of varieties needed by farmers and consumers.

Objectives:

  • Support faster and more cost-effective discovery and deployment of climate-adaptive alleles from the world’s germplasm collections.
  • Test integrated approaches for the rapid and cost-effective discovery and deployment of climate-adaptive alleles.

Mining Useful Alleles for Climate Change Adaptation from CGIAR Genebanks

The Mining Useful Alleles for Climate Change Adaptation from CGIAR Genebanks project, led by the International Maize and Wheat Improvement Center (CIMMYT), is expanding the use of biodiversity held in the world’s genebanks to develop new climate-smart crop varieties for millions of small-scale farmers worldwide. It aims to identify plant accessions in genebanks that contain alleles, or gene variations, responsible for characteristics such as heat, drought or salt tolerance, and to facilitate their use in breeding climate-resilient crop varieties.

Through this project, breeders will learn how to use genebank materials more effectively and efficiently to develop climate-smart versions of important food crops, including cassava, maize, sorghum cowpea, and rice.

Building on 10 years of support to CIMMYT from the Mexican government, CGIAR Trust Fund contributors, and the UK Biotechnology and Biological Sciences Research Council, the Mining Useful Alleles for Climate Change Adaptation from CGIAR Genebanks project combines the use of cutting-edge technologies and approaches, high-performance computing, GIS mapping, and new plant breeding methods to identify and use accessions with high value for climate-adaptive breeding of varieties needed by farmers and consumers.

This project works closely with the Fast Tracking Climate Solutions from CGIAR Germplasm Banks project.

Objectives

  • Support faster and more cost-effective discovery and deployment of climate -adaptive alleles from the world’s germplasm collections
  • Test integrated approaches for five major crops (i.e., cassava, maize, sorghum, cowpea, and rice), providing a scalable model for the rapid and cost-effective discovery and deployment of climate-adaptive alleles.

New endeavor fast-tracks the power of crop diversity for climate resilience

Shelves filled with maize seed samples make up the maize active collection at the germplasm bank at CIMMYT's global headquarters in Texcoco, Mexico. It contains around 28,000 unique samples of maize seed — including more than 24,000 farmer landraces — and related species. (Photo: Xochiquetzal Fonseca/CIMMYT)
Shelves filled with maize seed samples make up the maize active collection at the germplasm bank at CIMMYT’s global headquarters in Texcoco, Mexico. It contains around 28,000 unique samples of maize seed — including more than 24,000 farmer landraces — and related species. (Photo: Xochiquetzal Fonseca/CIMMYT)

A new $25.7 million project, led by the International Maize and Wheat Improvement Center (CIMMYT), a Research Center part of CGIAR, the world’s largest public sector agriculture research partnership, is expanding the use of biodiversity held in the world’s genebanks to develop new climate-smart crop varieties for millions of small-scale farmers worldwide.

As climate change accelerates, agriculture will be increasingly affected by high temperatures, erratic rainfall, drought, flooding and sea-level rise. Looking to the trove of genetic material in genebanks, scientists believe they can enhance the resilience of food production by incorporating this diversity into new crop varieties — overcoming many of the barriers to fighting malnutrition and hunger around the world.

“Better crops can help small-scale farmers produce more food despite the challenges of climate change. Drought-resistant staple crops, such as maize and wheat, that ensure food amid water scarcity, and faster-growing, early-maturing varieties that produce good harvests in erratic growing seasons can make a world of difference for those who depend on agriculture. This is the potential for climate-adaptive breeding that lies untapped in CGIAR’s genebanks,” said Claudia Sadoff, Managing Director, Research Delivery and Impact, and Executive Management Team Convener, CGIAR.

Over five years, the project, supported by the Bill & Melinda Gates Foundation, aims to identify plant accessions in genebanks that contain alleles, or gene variations, responsible for characteristics such as heat, drought or salt tolerance, and to facilitate their use in breeding climate-resilient crop varieties. Entitled Mining useful alleles for climate change adaptation from CGIAR genebanks, the project will enable breeders to more effectively and efficiently use genebank materials to develop climate-smart versions of important food crops, including cassava, maize, sorghum, cowpea and rice.

Wild rice. (Photo: IRRI)
Wild rice. (Photo: IRRI)

The project is a key component of a broader initiative focused on increasing the value and use of CGIAR genebanks for climate resilience. It is one of a series of Innovation Sprints coordinated by the Agriculture Innovation Mission for Climate (AIM4C) initiative, which is led by the United Arab Emirates and the United States.

“Breeding new resilient crop varieties quickly, economically and with greater precision will be critical to ensure small-scale farmers can adapt to climate change,” said Enock Chikava, interim Director of Agricultural Development at the Bill & Melinda Gates Foundation. “This initiative will contribute to a more promising and sustainable future for the hundreds of millions of Africans who depend on farming to support their families.”

Over the past 40 years, CGIAR Centers have built up the largest and most frequently accessed network of genebanks in the world. The network conserves and makes nearly three-quarters of a million crop accessions available to scientists and governments. CGIAR genebanks hold around 10% of the world’s plant germplasm in trust for humanity, but account for about 94% of the germplasm distributed under the International Treaty on Plant Genetic Resources for Food and Agriculture, which ensures crop breeders globally have access to the fundamental building blocks of new varieties.

“This research to develop climate-smart crop varieties, when scaled, is key to ensuring that those hardest hit by climate shocks have access to affordable staple foods,” said Jeffrey Rosichan, Director of the Crops of the Future Collaborative of the Foundation for Food & Agriculture Research (FFAR). “Further, this initiative benefits US and world agriculture by increasing genetic diversity and providing tools for growers to more rapidly adapt to climate change.”

“We will implement, for the first time, a scalable strategy to identify valuable variations hidden in our genebanks, and through breeding, deploy these to farmers who urgently need solutions to address the threat of climate change,” said Sarah Hearne, CIMMYT principal scientist and leader of the project.

Building on ten years of support to CIMMYT from the Mexican government, CGIAR Trust Fund contributors and the United Kingdom’s Biotechnology and Biological Sciences Research Council (BBSRC), the project combines the use of cutting-edge technologies and approaches, high-performance computing, GIS mapping, and new plant breeding methods, to identify and use accessions with high value for climate-adaptive breeding of varieties needed by farmers and consumers.

INTERVIEW OPPORTUNITIES:

Sarah Hearne – Principal Scientist, International Maize and Wheat Improvement Center (CIMMYT)

FOR MORE INFORMATION, OR TO ARRANGE INTERVIEWS, CONTACT THE MEDIA TEAM:

Marcia MacNeil, Head of Communications, CIMMYT. m.macneil@cgiar.org, +52 5558042004 ext. 2070.

Rodrigo Ordóñez, Communications Manager, CIMMYT. r.ordonez@cgiar.org, +52 5558042004 ext. 1167.

Four questions with CIMMYT’s Maize Genebank Curator

Seeds are a cornerstone of food security. That is why the maize and wheat genebanks have always been at the heart of the work of the International Maize and Wheat Improvement Center (CIMMYT).

Earlier this year, as the CIMMYT community wished farewell to Denise Costich, Terence (Terry) Molnar stepped into her shoes and took over the management of the world’s largest and most diverse collection of maize.

Molnar calls himself a curator, but unlike his counterparts at libraries and museums, his job is not only about registering and showcasing the 28,000 unique seed collections of maize. He and his team make sure that the rich maize biodiversity collected throughout time and geographies stays alive, viable and accessible to others.

We sat down with Molnar to learn more about his unique role and what we can do to celebrate biodiversity on the International Day for Biological Diversity — and every other day.

A conservation conversation

Germplasm banks around the world are protectors of genetic diversity, altogether preserving roughly 700,000 samples of wheat varieties from fields far and wide. Thomas (Tom) Payne, the head of CIMMYTs Wheat Germplasm Collection, or genebank, manages the Mexico-based collection of nearly 150,000 accessions from over 100 countries. He has been affiliated with CIMMYT since 1988, and has dedicated his career to wheat improvement and conservation, working in Ethiopia, Mexico, Syria, Turkey and Zimbabwe. In addition to managing the genebank, he is the chair of the CGIAR Genebank Managers Group, has served as secretary to the CIMMYT Board of Trustees, manages the CIMMYT International Wheat Improvement Network and was awarded the Frank N. Meyer Medal for Plant Genetic Resources in 2019.

In advance of his retirement in July 2021, CIMMYT senior scientist Carolina Saint Pierre sat down with Tom Payne over Zoom to ask him a few questions from the wheat breeding team about his lifetime of experience in wheat biodiversity conservation.

What is your favorite Triticum species?

Triticum aestivum, bread wheat, is my favorite. Bread wheat feeds around 2.7 billion people worldwide. In fact, more food products are made from wheat than from any other cereal. An interesting detail about Triticum aestivum, however, is that it’s a hexaploid, meaning that it is a distinct species formed from three separate species. The inherent genetic diversity resulting from its three ancestral species and its ability to naturally incorporate genetic diversity from other species gives breeders a broad palette of genetic diversity to work with for current and future needs.

How can genebank managers of vital food crops add diversity to existing collections?

Some of the thousands of samples that make up the wheat active collection in the Wellhausen-Anderson Plant Genetic Resources Center at CIMMYT's global headquarters in Texcoco, Mexico. (Photo: X. Fonseca/CIMMYT)
Some of the thousands of samples that make up the wheat active collection in the Wellhausen-Anderson Plant Genetic Resources Center at CIMMYT’s global headquarters in Texcoco, Mexico. (Photo: X. Fonseca/CIMMYT)

There are many vital genebanks, with community, national, regional, and international affiliations. Harmonization of these efforts into a global conservation network is needed. In wheat, for example, we do not adequately understand the diversity of the crop’s wild relatives. A recent study from Kansas State University observed that two thirds of the accessions of Aegilops tauschii held by several key collections were duplicates. This is an alarm to the global wheat community. The ex-situ collection of a critical species is less representative and more vulnerable than the sheer number of accessions would imply. We need to conduct a thorough characterization of all crop wild relatives to assess the risks to diversity, and a gap analysis of newly collected materials to ensure that their long-term conservation adds unique diversity to existing collections.

Which of the Triticum species that you store in the CIMMYT wheat genebank should, in your opinion, be explored much more?

Species that can readily cross with cultivated wheat, both bread wheat and durum wheat, should have intensified conservation and characterization efforts. Examples of these include Triticum monococcum subspecies monococcum (Einkorn) and Triticum turgidum subspecies dicoccon (Emmer).

What were the most surprising results from the genetic diversity analyses of nearly 80,000 wheat accessions from the CIMMYT genebank?

Modern, molecular genetic tools confirmed, for the most part, the centuries-old Linnaean taxonomic classification of Triticum and Aegilops species. There are generally two broad schools of taxonomists, “lumpers” and “splitters.” The former groups species based on a few common characteristics, and the latter defines multiple taxa based on many traits. The Seeds of Discovery work, in partnership with Michiel van Slageren from Kew Gardens, is confirming the salient taxonomy of the Triticum genus. Van Slageren previously studied and published a taxonomic monograph on the wheat ancestral Aegilops genus.

How can a genebank managers help in pre-breeding?

Maintaining native genetic diversity for use in the future is an important role that genebank managers play in pre-breeding and applied breeding processes. Furthermore, the identification of rare and odd variation plays an important role in understanding trait expression. Genebank managers are now gaining a stronger understanding of the genetic representativeness of their collections, and they can identify where gaps in the conserved genetic diversity may exist. A better understanding of the collections will enable their sustainable conservation and use.

Tom Payne at the Global Seed Vault in Svalbard, Norway, for the official opening ceremony in 2008. He holds one of the sealed boxes used to store the nearly 50,000 unique maize and wheat seed collections deposited by CIMMYT. (Photo: Thomas Lumpkin/CIMMYT)
Tom Payne at the Global Seed Vault in Svalbard, Norway, for the official opening ceremony in 2008. He holds one of the sealed boxes used to store the nearly 50,000 unique maize and wheat seed collections deposited by CIMMYT. (Photo: Thomas Lumpkin/CIMMYT)

What would you consider the biggest challenge when striving for genetic diversity in breeding wheat for the future?

CIMMYT and other CGIAR Centers are rightfully proud of their stewardship of global public goods, and the free access to and distribution of germplasm and information. Yet outside of the CGIAR, the two-way sharing of germplasm and knowledge is often still not realized by many crop communities. International agreements have attempted to bridge recognition of intellectual property rights with guaranteed access and benefit-sharing mechanisms. However, the playing field remains uneven between public and private organizations due to varied levels of investment and exclusivity, access to technology and information, and marketability.

What is one way we can ensure long-term conservation of staple crops around the world?

In the past few years, several internationally renowned germplasm collections have been destroyed due to civil conflicts, natural disasters and fires — for example in Aleppo, Cape Town and Sao Paulo. Each time, we hear what a shame it was that the destroyed heritage was lost, that it was irreplaceable and beyond value. When a genebank loses an accession, the ancestral lineage extending hundreds of generations becomes permanently extinct. Genebank managers recognize this threat, and hence duplicate samples of all accessions are now slowly being sent to the Global Seed Vault in Svalbard for long-term preservation.

Cover photo: Tom Payne, Wheat Germplasm Collections & International Wheat Improvement Network Manager. (Photo: X. Fonseca/CIMMYT)

Consider the seed

Seed viability test at the CIMMYT genebank. (Photo: Alfonso Cortés/CIMMYT)
Seed viability test at the CIMMYT genebank. (Photo: Alfonso Cortés/CIMMYT)

The conservation of plant genetic diversity through germplasm conservation is a key component of global climate-change adaptation efforts. Germplasm banks like the maize and wheat collections at the International Maize and Wheat Improvement Center (CIMMYT) may hold the genetic resources needed for the climate-adaptive crops of today and tomorrow.

But how do we ensure that these important backups are themselves healthy and not potential vectors of pest and disease transmission?

This was the question that animated “Germplasm health in preventing transboundary spread of pests and pathogens,” the second webinar in Unleashing the Potential of Plant Health, a CGIAR webinar series in celebration of the UN-designated International Year of Plant Health.

“Germplasm refers to the source plants of either specific cultivars or of unique genes or traits that can be used by breeders for improved cultivars,” program moderator and head of the Health and Quarantine Unit at the International Potato Center (CIP) Jan Kreuze explained to the event’s 622 participants. “If the source plant is not healthy, whatever you multiply or use it for will be unhealthy.”

According to keynote speaker Saafa Kumari, head of the Germplasm Health Unit at the International Center for Agricultural Research in the Dry Areas (ICARDA), we know of 1.3 thousand pests and pathogens that infect crops, causing approximately $530 billion in damages annually. The most damaging among these tend to be those that are introduced into new environments.

Closing the gap, strengthening the safety net

The CGIAR has an enormous leadership role to play in this area. According to Kumari, approximately 85% of international germplasm distribution is from CGIAR programs. Indeed, in the context of important gaps in the international regulation and standards for germplasm health specifically, the practices and standards of CGIAR’s Germplasm Health Units represent an important starting point.

“Germplasm health approaches are not necessarily the same as seed and plant health approaches generally,” said Ravi Khaterpal, executive secretary for the Asia-Pacific Association of Agricultural Research Institutions (APAARI). “Best practices are needed, such as CGIAR’s GreenPass.”

In addition to stronger and more coherent international coordination and regulation, more research is needed to help source countries test genetic material before it is distributed, according to Francois Petter, assistant director for the European and Mediterranean Plant Protection Organization (EPPO). Head of the CGIAR Genebank Platform Charlotte Lusty also pointed out the needed for better monitoring of accessions in storage. “We need efficient, speedy processes to ensure collections remain healthy,” she said.

Of course, any regulatory and technological strategy must remain sensitive to existing and varied social and gender relations. We must account for cultural processes linked to germplasm movement, said Vivian Polar, Gender and Innovation Senior Specialist with the CGIAR Research Program on Roots, Tubers and Bananas (RTB). Germplasm moves through people, she said, adding that on the ground “women and men move material via different mechanisms.”

“The cultural practices associated with seed have to be understood in depth in order to inform policies and address gender- and culture-related barriers” to strengthening germplasm health, Polar said.

The event was co-organized by researchers at CIP and the International Institute of Tropical Agriculture (IITA).

The overall webinar series is hosted by CIMMYT, CIP, the International Food Policy Research Institute (IFPRI), IITA, and the International Rice Research Institute (IRRI). It is sponsored by the CGIAR Research Program on Agriculture for Nutrition (A4NH), the CGIAR Gender Platform and the CGIAR Research Program on Roots, Tubers and Bananas (RTB).

The third of the four webinars on plant health, which will be hosted by CIMMYT, is scheduled for March 10 and will focus on integrated pest and disease management. 

Costich retires, but her odyssey continues

Denise E. Costich, the recently retired head of the Maize Collection at the Germplasm Bank of the International Maize and Wheat Improvement Center (CIMMYT), sometimes likes to include a Woody Allen quote in her presentations.

“I have no idea what I’m doing,” declares the text over a photo of a befuddled-looking Allen. “But incompetence never stopped me from plunging in with enthusiasm.”

This is perhaps Costich’s tongue-in-cheek way of acknowledging the unusual trajectory that led her to the Germplasm Bank and her zeal for new and interesting challenges. But it is in no way an accurate reflection of the skill, knowledge and humane managerial style she brought to the job.

“CIMMYT requires individuals with a broad set of experiences,” says Tom Payne, head of the Wheat Collection at CIMMYT’s Germplasm Bank. Though she was not trained as a crop scientist, and despite having never worked in a genebank before, Costich’s rich set of professional and life experiences made her an ideal person for the job.

From Ithaca and back again

Born and raised in Westbury, NY, Costich spent much of her childhood on a tree nursery. Her grandfather was the manager, her father became the sales director and eventually her sister also went into the horticulture business. While her experiences on the nursery contributed to an early interest in plants and ecology, the business aspect of the nursery eluded her. “I just can’t sell things. I’m terrible,” Costich says. “But I really do like to study them.”

This studiousness took her to Cornell University in Ithaca, NY, where she initially declared as a wildlife biology major. Her notion of what it meant to “study things” was influenced by her early heroes, primatologists and field biologists Dian Fossey and Jane Goodall. It involved travel. Fieldwork in faraway places. So, when the opportunity arose at the end of her sophomore year to travel to Kenya with Friends World College, Costich didn’t hesitate.

Costich eventually spent four years in Kenya, studying baboons. When she finally returned to Ithaca, she knew two things. Fieldwork was absolutely her thing, and she wanted to pursue a doctorate.

A chance conversation with her housemates in her last semester led to a post-graduation fieldwork stint in the Brazilian Amazon under the supervision of the legendary tropical and conservation biologist, Thomas Lovejoy. But instead of a dissertation topic, she stumbled across a parasite, a case of leishmaniasis and the realization that the rainforest was not the work environment for her.

Unexpected influences and outcomes continued to mark Costich’s career throughout her graduate studies at the University of Iowa. She found her plant not in the field, but while reading a dusty review paper as an exchange student at the University of Wisconsin. Her study of Ecballium elaterium (a wild species in the Cucurbitaceae, or squash, family) did not take her back to the tropics — where most of her peers were working and where she expected to be headed as a grad student — but rather to Spain where, incidentally, she first learned Spanish.

Several years after defending, Costich landed a tenure-track position in the Biology Department at The College of New Jersey. She continued to publish on Ecballium elaterium. Her career appeared to be settling into a predictable, recognizable academic trajectory — one with no obvious intersection with CIMMYT.

Then Costich saw an ad in the Ecological Society of America bulletin for a managing editor position for all of the Society’s journals. Her husband, a fellow biology Ph.D., had been working as an academic journal editor for several years. When Costich saw the ad she immediately drove over to her husband’s office. “I slapped the thing on his desk and said, ‘Here’s your job!’” she recalls.

Costich was right. Soon after, she was on her way back to Ithaca — where the Society’s offices were located — with a family that now included three children. While it was the right move for her family, it came at the cost of her budding academic career. In Ithaca, she soon found herself stuck in the role of itinerant postdoc.

Denise Costich in Spain in 1986, doing fieldwork on Ecballium elaterium with her daughter Mara.
Denise Costich in Spain in 1986, doing fieldwork on Ecballium elaterium with her daughter Mara.

An amazing turn of events

Costich admits that, especially the beginning, the return to Ithaca was tough, even depressing. Her recollections of these years can sound a bit like a game of musical chairs played with research laboratories. As one post-doc or research project wound down, she’d find herself scanning the campus for her next perch. She became very adept at it. “In ten years, I never missed a paycheck,” Costich says.

The turn of the millennium found Costich scanning the horizon yet again. As the days wound down at her latest post, a maize geneticist moved into the lab next door. What started as hallway jokes about Costich jumping ship and joining the maize lab soon turned into an interview, then a job offer.

The job introduced her to nearly everyone at Cornell working in maize genetics. Costich soon found herself managing the Buckler Lab’s work on maize population genetics. Meanwhile, she dabbled in side projects on Tripsacum, a perennial grass genus that is closely related to maize, and managed a major project on switchgrass. At the end of her postdoc, Buckler set to work trying to create a permanent position for her. Once again, Costich’s trajectory was beginning to take a stable, predictable form.

Then CIMMYT scientist Sarah Hearne showed up. “I’d heard through the grapevine — or maybe through the corn field — that the position of manager of the Maize Collection of CIMMYT’s Germplasm Bank was open… and that they were having a hard time trying to find a person for the position,” Costich recalls. She had met Hearne previously and personally knew and had worked with Suketoshi Taba, the pioneering longtime director of the germplasm bank. Naturally the topic emerged as she and Hearne caught up in Ithaca.

Hearne admitted that the search hadn’t yet been successful. “But I know the perfect person for the job,” she added.

“Yeah, who’s that?” Costich asked, not getting the setup.

Denise Costich, the maize collection manager at CIMMYT’s Maize and Wheat Germplasm Bank, shows one of the genebank's more than 28,000 accessions of maize. (Photo: Luis Salazar/Crop Trust)
Denise Costich, the maize collection manager at CIMMYT’s Maize and Wheat Germplasm Bank, shows one of the genebank’s more than 28,000 accessions of maize. (Photo: Luis Salazar/Crop Trust)

A stranger in a strangely familiar land

Costich was not a little surprised by the suggestion. She had never worked at a germplasm bank before. She was finally finding some stability at Cornell.

At the same time, her early dreams of exploring new places through her work, especially the tropics, beckoned. Her youngest son was nearly college-aged. Against the advice of some who had watched her work so hard to establish herself at Cornell, she took the plunge.

By the time she reached the CIMMYT campus in Texcoco, Costich had crisscrossed a good part of the globe, picking up Spanish here, management skills there, a deep knowledge of maize and its biological and cultural evolution yonder. During this life journey, she developed a deep humanism that is all her own.

It all seemed like happenstance, perhaps, until she reached Mexico and — suddenly, counterintuitively — found herself in the field she was perfectly adapted for. “It turned out that being a germplasm bank manager was the perfect job for me, and I didn’t even know it!” Costich says. “I ended up using everything I learned in my entire career.”

That isn’t to say that it was easy, especially at first. Taba, her predecessor, had occupied the post for decades, was a trained crop scientist, and had grown the bank from a regionally-focused collection with 12,000 accessions to the preeminent maize germplasm bank globally with 28,000 accessions, a state-of-the-art storage facility, and a slew of pioneering practices.

Not only had Taba left enormous shoes to fill, during his tenure — as is common in the expansionary phase of many projects — it had been difficult for the bank to keep a full accounting and understanding of all the new material that had been added. According to germplasm bank coordinator Cristian Zavala, by the time Costich joined CIMMYT “we knew very little about the material in our vaults.”

“Taba was primarily a breeder,” Costich says. “I actually think this oscillation between a focus on breeding and a focus on conservation and curation is good for the bank.”

Visiting a newly-built community seed reserve in Chanchimil, Todos Santos Cuchumatanes, Huehuetenango, Guatemala, in 2016. From left to right: Mario Fuentes (collaborator), a member of the community seed reserve staff, Denise Costich, Carolina Camacho (CIMMYT), Miriam Yaneth Ramos (Buena Milpa) and Esvin LĂłpez (local collaborator).
Visiting a newly-built community seed reserve in Chanchimil, Todos Santos Cuchumatanes, Huehuetenango, Guatemala, in 2016. From left to right: Mario Fuentes (collaborator), a member of the community seed reserve staff, Denise Costich, Carolina Camacho (CIMMYT), Miriam Yaneth Ramos (Buena Milpa) and Esvin LĂłpez (local collaborator).
Visiting one of the oldest community seed reserves in the region, Quilinco, Huehuetenango, Guatemala, in 2016. From left to right: Pedro Bello (UC Davis), Esvin López (local collaborator), Denise Costich, José Luis Galicia (Buena Milpa), Ariel Rivers (CIMMYT) and Miriam Yaneth Ramos (Buena Milpa).
Visiting one of the oldest community seed reserves in the region, Quilinco, Huehuetenango, Guatemala, in 2016. From left to right: Pedro Bello (UC Davis), Esvin López (local collaborator), Denise Costich, José Luis Galicia (Buena Milpa), Ariel Rivers (CIMMYT) and Miriam Yaneth Ramos (Buena Milpa).
Costich with the winners of the Second Harvest Fair and Largest Mature Ear of Jala Maize Contest in Coapa, in Mexico’s Nayarit state.
Costich with the winners of the Second Harvest Fair and Largest Mature Ear of Jala Maize Contest in Coapa, in Mexico’s Nayarit state.
Costich (left) measures ears of corn for the Second Harvest Fair and Largest Mature Ear of Jala Maize Contest in Coapa, in Mexico’s Nayarit state in 2019.
Costich (left) measures ears of corn for the Second Harvest Fair and Largest Mature Ear of Jala Maize Contest in Coapa, in Mexico’s Nayarit state in 2019.
Costich (center) shares some comments from the stage at the Second Harvest Fair and Largest Mature Ear of Jala Maize Contest in Coapa, in Mexico’s Nayarit state. To her left is Angel Perez, a participating farmer from La Cofradía, and to her right, Rafael Mier, Director of the Fundación Tortillas de Maíz Mexicana.
Costich (center) shares some comments from the stage at the Second Harvest Fair and Largest Mature Ear of Jala Maize Contest in Coapa, in Mexico’s Nayarit state. To her left is Angel Perez, a participating farmer from La Cofradía, and to her right, Rafael Mier, Director of the Fundación Tortillas de Maíz Mexicana.

A bank for farmers

However, according to Zavala, because of the limited knowledge of much material they were working with, many in the bank’s rank-and-file didn’t fully understand the importance of their work. Morale was mixed. Moreover, despite an assumption that her new job would see her working closely with local smallholders, Costich found that the institution was poorly known by everyday farmers in its host country. Where it was known, associate scientist on innovation and social inclusion, Carolina Camacho, notes, there was an assumption that CIMMYT only worked with hybrid varieties of maize and not the native landraces many smallholders in Mexico depend on.

These became the principal axes of Costich’s work at the bank: curation of backlogged material, staff development, and community outreach.

Thus, when Costich realized that records were being kept in a combination of paper and rudimentary digital formats, she sent Zavala, a promising young research assistant at the time, to an internship at the USDA’s Maize Germplasm Bank Collection in Ames, Iowa, to workshops at CGIAR germplasm banks in Colombia (CIAT) and Ethiopia (ILRI), and to meetings on specialized topics in Germany and Portugal.

Zavala had never left the country before, spoke little English, and remembers being “rebellious” at work. “I needed more responsibility,” he says. “Dr. Denise saw that and helped me grow.” Upon returning from an early trip, Zavala helped implement up-to-date traceability and data management processes, including migrating the genebank’s data onto the USDA’s GRIN-Global platform.

But as Payne points out, Costich’s tenure was never about simple bean — or, in this case, grain — counting. “She sees a more human aspect of the importance of the collections,” he says. The main tasks she set for the bank came to be subsumed into the overarching goal of a fuller understanding of the contents of the bank’s vaults, one that encompassed both their biological and sociocultural importance.

When Costich came across a collection of maize landraces from Morelos state assembled by Ángel Kato in the mid 1960s that conserved the name of the farmer who had donated each sample, she worked with Camacho and graduate student Denisse McLean-Rodriguez to design a study involving the donor families and their communities. McLean-Rodriguez, Camacho and Costich set out to compare the effects of ex-situ versus in-situ landrace conservation in both genetic and socioeconomic terms.

Similarly, when a colleague at INIFAP invited Costich to be a judge at a yearly contest for largest ear of Jala landrace maize in Mexico’s Nayarit state, they soon began discussing how they could contribute more than just their participation as judges to the community. Starting in 2016 Costich was a co-lead on a study of the landrace’s genetic diversity as well as an initiative to rematriate Jala seeds conserved at CIMMYT for over 60 years.

Costich and members of the Maize Collection team hosting Pedro Bello from UC Davis (center, glasses) at the CIMMYT Germplasm Bank in Texcoco, Mexico, for a workshop on seed longevity and conservation techniques.
Costich and members of the Maize Collection team hosting Pedro Bello from UC Davis (center, glasses) at the CIMMYT Germplasm Bank in Texcoco, Mexico, for a workshop on seed longevity and conservation techniques.

A genebank is not an island

Genebanks are bulwarks against genetic erosion. But, as Camacho explains, this mission can be understood in both very narrow and very broad senses. The narrow sense focuses on genetic processes per se: the loss of alleles. The broad sense includes the loss of cultural practices and knowledge built and sustained around the cultivation of a given landrace. Through the initiatives the bank has undertaken during her tenure, Costich has tried to demonstrate, both scientifically and in practice, how germplasm collections such as CIMMYT’s can complement, reinforce, and be enriched by the work of smallholders — de facto germplasm conservators in their own right — while contributing to the difficult task of combating genetic erosion in the broad sense.

One gets the sense that in Costich’s view this isn’t about a one-way process of big institutions “helping” smallholders. Rather it’s about collaboration among all the participants in an interdependent web of conservation. As she argued at her recent exit seminar, Costich views germplasm banks as one link in a chain of food security backups that begins at the farm level.

Indeed, Costich’s most recent initiative demonstrated how innovations intended for one link in the chain can travel upwards and find applications at bigger institutions.

Costich recently led an initiative with community seed banks in the Cuchumatanes mountain range of Guatemala to study the use of DryChain technology in post-harvest storage of maize. This experiment showed the enormous benefits that incorporating such technologies could yield for energy-insecure or low-tech family and community seed reserves.

Ultimately, however, the study led to a second experiment at CIMMYT’s tropical-climate station at Agua Fría in Mexico. With advice from collaborators at UC Davis and an industry partner (Dry Chain America), the seed conditioning team retrofitted an old drying cabinet at the station to dry maize without using heat, but rather by forcing air to circulate through sacks of drying beads. Under the direction of Filippo Guzzon, a postdoc and seed biologist working with Costich, the long-term viability of seeds dried using the accelerated technique versus traditional, slower techniques was tested. The study showed no loss in long-term viability using the accelerated drying technique.

Denise Costich, CIMMYT director general Martin Kropff, and the Maize Collection team confer certificates of participation to two visiting interns, Jiang Li (to the left of Kropff), a doctoral student from CAAS, Beijing, China, and Afeez Saka Opeyemi (to the right of Costich), a staff member of the IITA Germplasm Bank in Nigeria.
Denise Costich, CIMMYT director general Martin Kropff, and the Maize Collection team confer certificates of participation to two visiting interns, Jiang Li (to the left of Kropff), a doctoral student from CAAS, Beijing, China, and Afeez Saka Opeyemi (to the right of Costich), a staff member of the IITA Germplasm Bank in Nigeria.
Costich and the Maize Collection team at the 2018 CIMMYT Christmas party. Filippo Guzzon, seated to the right of Costich, had just been offered a postdoc with the team.
Costich and the Maize Collection team at the 2018 CIMMYT Christmas party. Filippo Guzzon, seated to the right of Costich, had just been offered a postdoc with the team.
Costich and the Maize Collection team at the 2018 CIMMYT Christmas party.
Costich and the Maize Collection team at the 2018 CIMMYT Christmas party.

A very busy retirement

At her exit seminar, Costich was presented a plaque in appreciation of her service at CIMMYT by Kevin Pixley, director of the genetic resources program. Terence Molnar, maize breeder with the Genetic Resources Team, has succeeded Costich as the Maize Germplasm Bank Head.

For some of her close colleagues, however, Costich’s departure is not the end of the road. “This is not a forever goodbye,” Guzzon says. “I will continue to be in touch with my cuatita,” says Camacho, who has also left CIMMYT.

For her part, Costich echoes that this is not a forever goodbye at all. Not to her friends and colleagues, and certainly not to her work. At a socially-distanced, maize-based farewell lunch Costich held just days before her departure, she was still busy weaving social connections and furthering collaborations among maize fanatics of all stripes — from chefs and designers to scientists and policy advocates.

She is already considering taking a part time position at her old lab at Cornell and a return to Tripsacum research. At the same time, she will be a visiting scientist at Mexico’s National Center for Genetic Resources (CNRG), where officially she will be heading up part of an international switchgrass study. Costich is hoping to leverage her tenure at CIMMYT by getting involved in a push to help improve the Mexican national system for plant genetic resources. Additionally, she has recently accepted an invitation from Seed Savers Exchange to join their board and she is looking forward to volunteering her time and expertise to various seed-saving initiatives within that organization and their many collaborators.

Asked what she’s looking forward to tackling in her retirement that isn’t work related, Costich betrays her deep allegiance to the plant world. “I don’t know,” she says, “I’m thinking of starting a big vegetable garden.”

Cover photo: Denise Costich stands for a photo during the inauguration of the CIMMYT Genebank museum in 2019. (Photo: Alfonso Cortés/CIMMYT)

The many colors of maize, the material of life

Tonahuixtla, a small town located in Mexico’s state of Puebla, had suffered extreme environmental degradation due to deforestation and erosion. Agricultural land was in poor condition and the town had stopped producing many of their heirloom maize varieties, a loss to both biodiversity in the region and local culture. Poverty had increased, forcing many to migrate to bigger cities or to the United States for work. Those who were left behind, most of them women, had few ways to generate income to support their families.

Today, the story of Tonahuixtla is different. The town actively participates in reforestation and erosion-prevention activities. Landrace maize production is increasing, preserving the town and region’s biodiversity and customs. The residents have job opportunities that allow them to stay in their town and not migrate, all while preserving local biodiversity and protecting the environment.

What caused this change?

Corn husks.

Long considered a waste product, corn husks have been given a new lease on life through the Totomoxtle project. Named for the traditional indigenous Nahuatl word for corn husk, Totomoxtle turns the husks of native maize, found in a variety of colors, into a beautiful and sustainable veneer for furniture and walls. Founded by Mexican graphic designer Fernando Laposse, Totomoxtle has given farmers an incentive to plant native maize again, preserving invaluable biodiversity for future generations.

When Denise Costich, head of the maize collection of the germplasm bank at the International Maize and Wheat Improvement Center (CIMMYT), heard about the Totomoxtle project she knew she wanted to help. Passionate about preserving native maize, she and her team identified 16 landrace varieties from the CIMMYT maize collection that would produce husks in interesting colors and could grow well in the altitude and climate conditions of Tonahuixtla. She invited Laposse and project members to come visit the genebank and learn about CIMMYT’s work, and provided them with seed of the landraces they had identified.

“This is what we normally do in our work at the germplasm bank, we give people seed,” Costich said. “But this turned into a closer collaboration.”

In the dry and mountainous terrain surrounding the village of Tonahuixtla, native maize preservation and reforestation efforts have been key in protecting the local environment and culture. (Photo: Denise Costich/CIMMYT)
In the dry and mountainous terrain surrounding the village of Tonahuixtla, native maize preservation and reforestation efforts have been key in protecting the local environment and culture. (Photo: Denise Costich/CIMMYT)

Colorful collaboration

The maize germplasm bank team arranged for Totomoxtle project members to receive training in how to make controlled pollinations in the native maize varieties, at one of CIMMYT’s experimental stations.

“The technicians at CIMMYT’s Agua Fria station loved meeting the project members from Tonahuixtla, and immediately became passionate about the Totomoxtle project,” Costich said. “To this day, the technicians still save all of the colored corn husks from CIMMYT maize trials and send them to Tonahuixtla to provide them with additional material for their project.”

In the village of Tonahuixtla, project members — many of them women — work to iron the corn husks flat and glue them on to a stiff backing, then send them via courier to Laposse’s workshop in London where he uses them to create beautiful furniture and wall panels. This work allows the residents of Tonahuixtla to stay in their village and not be forced to migrate, all while preserving maize biodiversity and protecting the environment.

“Part of what this project is doing is also helping to keep families together — providing livelihoods so that people can stay in their communities, so that they don’t have to send all of their young people off to Mexico City or to the United States. To me, it’s really all connected,” Costich said.

Native maize tassels against a bright blue sky in Tonahuixtla. (Photo: Denise Costich/CIMMYT)
Native maize tassels against a bright blue sky in Tonahuixtla. (Photo: Denise Costich/CIMMYT)
In the town of Tonahuixtla, Puebla, Mexico, a native maize field sits below a tree-covered hillside. The town has been active in reforestation efforts to control erosion. (Photo: Denise Costich/CIMMYT)
In the town of Tonahuixtla, Puebla, Mexico, a native maize field sits below a tree-covered hillside. The town has been active in reforestation efforts to control erosion. (Photo: Denise Costich/CIMMYT)
Denise Costich (front right, sitting) poses for a photo with Tonahuixtla residents and members of the Totomoxtle project. (Photo: Provided by Denise Costich/CIMMYT)
Denise Costich (front right, sitting) poses for a photo with Tonahuixtla residents, members of the Totomoxtle project, and CIMMYT Germplasm Bank staff. (Photo: Provided by Denise Costich/CIMMYT)

The value of sustainability

The project also shows the intersection between biodiversity conservation and protecting the local environment. The maize husks used for the project are a sustainable and biodegradable material, and any residue from the maize husks that are not used for the Totomoxtle project are either fed to animals in the dry season or used to make fertilizer, which is then returned to the maize fields, a completely circular cycle in which nothing is wasted.

“I think that many of the communities that we work in really do understand the value and the importance of biodiversity,” Costich said. “In Tonahuixtla, the people are trying to reforest the hillsides in their region. They understand the connection between having no vegetation on the hills and having the rain water just roll right off the hills and into the temporary streams, thus losing that critically important resource. Over the years, as a result of the work they have done there, they have seen with their own eyes the improvement in the environment, not only that the hills are now covered with vegetation, but also they see a lot less runoff and erosion. I think that’s a really important lesson for everyone. I come from an ecology background, so I am always very excited to get involved in projects where it’s not just about maize, it’s about everything. It’s also about people’s lives, and nutrition, and the connections between them.”

Preserving local maize biodiversity is not just important for Tonahuixtla — it is important to all of humanity. Native maize varieties have adapted for thousands of years in farmers’ fields across Mesoamerica, developing natural resistance to local plant pests and diseases, as well as climatic conditions such as heat or drought. These native maize seeds, passed down generation to generation, could hold the key to developing improved maize varieties that can resist emerging maize diseases or extreme weather events related to climate change. If this biodiversity is lost, it represents a loss to global food security as a whole.

CIMMYT works to protect many of these native maize varieties in their germplasm bank, which is home to over 28,000 different collections of maize. Kept in cold storage under optimum conditions in the CIMMYT seed vault, these seeds are preserved for future generations and are available to anyone who needs them, including farmers such as those in Tonahuixtla, who had lost much of their native maize diversity.

“The biodiversity of cultivated plants is basically the guarantee for the future,” Costich said. “This is our security backup. Seed security is food security.”

Maize cobs and veneer made out of corn husks are on display at an exhibition of the Totomoxtle project in Mexico City. (Photo: Denise Costich/CIMMYT)
Maize cobs and veneer made out of corn husks are on display at an exhibition of the Totomoxtle project in Mexico City. (Photo: Denise Costich/CIMMYT)
Members of the CIMMYT Germplasm Bank team stand for a photo with a variety of landraces at an exhibition of the Totomoxtle project in Mexico City. (Photo: Emilio Diaz)
Members of the CIMMYT Germplasm Bank team stand for a photo with a variety of landraces at an exhibition of the Totomoxtle project in Mexico City. (Photo: Emilio Diaz)

Cover photo: Denise Costich (center, pink hat) stands with members of the Totomoxtle project and CIMMYT Germplasm Bank staff members near Tonahuixtla. (Photo: Provided by Denise Costich/CIMMYT)

New greenhouse honors scientist, aims to further maize wild relatives research

On February 27, 2020, the International Maize and Wheat Improvement Center (CIMMYT) opened a new greenhouse at its research station in Tlaltizapán, in Mexico’s state of Morelos. The Garrison Wilkes Center for Maize Wild Relatives is named after a pioneering scientist in the field of maize genetics.

“The name teosinte refers to a group of wild relatives of maize,” said Denise Costich, manager of the maize germplasm collection at CIMMYT. “The seven members of this group — all in the genus Zea — are more grass-like than maize, produce hard-shelled seeds that are virtually inedible, and are capable of enduring biotic and abiotic stressors better than their crop relative.” Teosintes must be protected, Costich explained, as they possess some desirable qualities that could help improve maize resilience in difficult conditions. Since CIMMYT’s Germplasm Bank is the global source for teosinte seed, the new greenhouse, designed exclusively for the regeneration of teosinte accessions from the bank collection, will ensure that there will always be seed available for research and breeding.

Garrison Wilkes was one of the first scientists to emphasize the importance of the teosintes and their close biological relationship to maize. He spent more than 50 years working on maize conservation in collaboration with CIMMYT.  Together with scientists such as Angel Kato, a former CIMMYT research assistant and longtime professor, Suketoshi Taba, former head of CIMMYT’s Germplasm Bank, and Jesus Sanchez, as researchers at the University of Guadalajara, he contributed to the development of the global maize collection of CIMMYT’s Germplasm Bank as it exists today.

(From left to right) Garrison Wilkes, Angel Kato and Jesus Sanchez, study a teosinte population in Los Reyes, near Texcoco, Mexico, in 1992. (Photo: Mike Listman/CIMMYT)
(From left to right) Garrison Wilkes, Angel Kato and Jesus Sanchez, study a teosinte population in Los Reyes, near Texcoco, Mexico, in 1992. (Photo: Mike Listman/CIMMYT)

Keeping seeds alive

Teosintes are the wild plants from which maize was domesticated about 7,000 years ago. They are durable, with natural resistance to disease and unfavorable weather, and grow primarily in Mexico, Guatemala, Honduras and Nicaragua. “What makes [teosinte] a wild plant is its seed dispersal. Corn doesn’t disperse its seed — it’s stuck on the cob. To be a wild plant means they can sow their own seed and survive,” explained Wilkes. Keeping these seeds alive could be the key to developing resilient modern maize with the potential to feed millions.

One of the difficulties in growing maize and teosinte in TlaltizapĂĄn to produce seed for global distribution is that the station is surrounded by sugarcane fields. Sugarcane carries a disease called the Sugarcane Mosaic Virus (SCMV), to which maize and teosinte are susceptible, and SCMV-positive seed cannot be distributed outside of Mexico. Additionally, if teosinte and maize are grown in close proximity to one another, it becomes very difficult to control gene flow between them via airborne pollen. Several experiments, ranging from growing the teosinte in pots to monitoring that the maize and teosinte flower at different times, could not fully guarantee that there was no cross-contamination. Therefore, in order to continue to cultivate maize and teosinte within the same station, the CIMMYT Germplasm Bank needed to create an isolated environment.

Garrison Wilkes describes characteristic features of the teosinte grown in the greenhouse. (Photo: Alfonso Cortés/CIMMYT)
Garrison Wilkes describes characteristic features of the teosinte grown in the greenhouse. (Photo: Alfonso Cortés/CIMMYT)

On average, the teosinte seed collections in the germplasm bank were nearly 19 years old, and 29% were not available for distribution due to low seed numbers. Researchers needed to find a way to produce more high-quality seed and get started as soon as possible. “My staff and I visited Jesus Sanchez, a world-renowned teosinte expert, and learned as much as we could about how to cultivate teosinte in greenhouses,” explained Costich “We realized that this could be the solution to our teosinte regeneration problem.”

Construction of the new greenhouse began in late 2017, with funding received from the 2016 Save a Seed Campaign — a crowdfunding initiative which raised more than $50,000. Donations contributed to activities such as seed storage, tours and educational sessions, seed collection, seed repatriation and regeneration of depleted seeds. With the new greenhouse, CIMMYT scientists can now breed teosinte without worrying about maize contamination, and prevent the extinction of these valuable species.

CIMMYT holds most of the world’s publically accessible collections of teosinte. “The wild relatives are a small part of our collection, but also a very important part, as they are theoretically the future of genetic diversity,” said Costich.“They have been important in the evolution of the crop. If we lose them, we can’t learn anything more from them, which would be a shame.”

Garrison Wilkes (left) poses with maize producer Ventura Garcia and her family. (Photo: Alfonso Cortés/CIMMYT)
Garrison Wilkes (left) poses with maize producer Ventura Garcia and her family. (Photo: Alfonso Cortés/CIMMYT)

CIMMYT scientists join fellow experts in San Diego for world’s largest plant and animal genomics conference

Scientists from the International Maize and Wheat Improvement Center (CIMMYT) presented last week at the International Plant and Animal Genome Conference (PAG) in San Diego, USA.

PAG is the largest agricultural genomics meeting in the world, bringing together over 3,000 leading genetic scientists and researchers from around the world to present their research and share the latest developments in plant and animal genome projects. It provides an important opportunity for CIMMYT scientists to highlight their work translating the latest molecular research developments into wheat and maize breeding solutions for better varieties.

To meet global food demand by 2050, agricultural production must increase by 60% — while at the same time minimizing harm to the environment. This is the process of sustainable intensification, recommended by organizations like the United Nations and the EAT Lancet Commission as a key strategy for transforming our struggling global food systems.

Genomics is crucial to sustainable intensification. By studying a plant or animal’s genetic architecture, researchers can better understand what drives crop or livestock productivity, quality, climate resilience, and resistance to pests and diseases. With this information scientists can speed up efforts to develop better varieties and stay ahead of climate- and disease-related threats.

Philomin Juliana stands next to the logo of the PAG conference. (Photo: CIMMYT)
Philomin Juliana stands next to the logo of the PAG conference. (Photo: CIMMYT)

At the conference, wheat scientist Philomin Juliana shared her findings on successfully identifying significant new chromosomal regions for wheat yield and disease resistance using the full wheat genome map. Juliana and her colleagues have created a freely-available collection of genetic information and markers for more than 40,000 wheat lines which will accelerate efforts to breed superior wheat varieties. She also discussed the value of genomic and high-throughput phenotyping tools for current breeding strategies adopted by CIMMYT to develop climate-resilient wheat.

Principal scientist Sarah Hearne discussed the smarter use of genebank exploration for breeding. Germplasm banks are reserves of native plant variation representing the evolutionary history of the crops we eat. They are a vital source of genetic information, which can accelerate the development of better, more resilient crops. However, it is not easy for breeders and scientists to identify or access the genetic information they need. Using the whole genebank genotypic data, long-term climate data from the origins of the genebank seeds and novel analysis methods, Hearne and her colleagues were able to identify elite genetic breeding material for improved, climate resilient maize varieties. They are now extending this approach to test the value of these data to improve breeding programs and accelerate the development of improved crops.

Distinguished scientist Jose Crossa discussed the latest models and methods for combining phenomic and genomic information to accelerate the development of climate-resilient crop varieties. He highlighted the use of the Artificial Neural Network — a model inspired by the human brain — to model the relationship between input signals and output signals in crops. He also discussed a phenotypic and genomic selection index which can improve response to selection and expected genetic gains for all of an individual plant’s genetic traits simultaneously.

Sarah Hearne presents on the smart use of germplasm banks to accelerate the development of better wheat and maize varieties. (Photo: Francisco Gomez)
Sarah Hearne presents on the smart use of germplasm banks to accelerate the development of better wheat and maize varieties. (Photo: Francisco Gomez)

Principal scientist Kanwarpal Dhugga gave a presentation on approaches to improve resistance against maize lethal necrosis (MLN) in Africa. MLN is an aggressive disease that first appeared in Kenya in 2011, devastating maize production. It has since spread to neighboring countries. Under a grant from the Bill & Melinda Gates Foundation, Dhugga and his colleagues at CIMMYT and Corteva Agriscience have identified a small genomic region explaining more than 50% of variation in MLN resistance. They are currently validating a few candidate genes in this region. Once done, they will use gene editing directly in elite lines from eastern Africa to accelerate the development of improved, disease resistant maize hybrids.

Genomic breeder Umesh Rosyara demonstrated the genomic selection pipeline and other tools at a workshop using the online Galaxy software. Galaxy is an open-source software that allows users to access powerful computational analysis tools. The CGIAR Excellence in Breeding Platform (EiB) has set up an instance of Galaxy that contains a suite of bioinformatics analysis tools, R-packages — a free software environment for statistical computing and graphics — and visualization tools to manage routine genomic selection (GS) and genome wide association studies (GWAS) analysis. This allows crop breeders and genomic scientists without a programming background to conduct these analyses and create crop-specific workflows.

“PAG is currently the main international meeting touching both crop and livestock genomics, so it’s an invaluable chance to connect and share insights with research and breeding colleagues around the world,” said Hearne. “It’s also an important forum to highlight how we are linking upstream and field, and help others do the same.”

Kanwarpal Dhugga (left) takes a selfie with his colleagues in the background during the PAG conference. (Photo: Kanwarpal Dhugga/CIMMYT)
Kanwarpal Dhugga (left) takes a selfie with his colleagues in the background during the PAG conference. (Photo: Kanwarpal Dhugga/CIMMYT)

Prevention is better than cure

Whenever seed is transferred between countries, continents or regions there is an inherent risk that new plant pathogens could spread to previously non-infested areas — with potentially devastating consequences. FAO estimates that these pathogens are responsible for the loss of up to 40% of global food crops, and for trade losses in agricultural products exceeding $220 billion each year.

With old and new pests and diseases causing devastation across the world, it is becoming increasingly important to consider plant health. This is especially true at the International Maize and Wheat Improvement Center (CIMMYT), an organization which processes and distributes enormous quantities of seed each year and in 2019 alone sent over 10,000 tons to more than 100 partners in Africa, the Americas, Asia and Europe.

Amos Alakonya joined CIMMYT in July 2019, and as head of the organization’s Seed Health Unit he is acutely aware of the need to mitigate risk throughout the seed production value chain.

In the lead up to this year’s International Phytosanitary Awareness Week, the plant pathologist sits down to discuss pests, screening procedures, and explain why everyone should be talking about seed health.

Amos Alakonya, head of CIMMYT's Seed Health unit. (Photo: Eleusis Llanderal/CIMMYT)
Amos Alakonya, head of CIMMYT’s Seed Health unit. (Photo: Eleusis Llanderal/CIMMYT)

Can you start by telling us about the CGIAR Germplasm Health Unit consortium and what it does?

Within CGIAR we have a cluster called Genebank Platform whose main function is to support CGIAR efforts in conservation and distribution of germplasm.  Ten CGIAR Centers have germplasm banks that work closely with germplasm health units to ensure that they only distribute plant materials free from pests and diseases.

What is the procedure for introducing seed at CIMMYT?

At CIMMYT, researchers must follow the correct procedure when bringing in seed.  Once someone has identified the need to bring in seed, contacted a supplier and agreed on the genotypes and amount required, the responsibility is transferred to the Seed Health Unit. We take care of communication with the seed supplier and provide support in acquisition of the necessary phytosanitary documentation that will ensure compliance with host country rules.

For instance, we will process and provide a plant import permit allowing us to bring in the seed while also stipulating the conditions it must meet before entry into Mexico. This document is used as the standard guide by the authorities in the supplier country, commonly referred to us National Plant Protection Organization (NPPO). The NPPO will then perform a pre-shipment verification and issue a phytosanitary certificate if the seed meets the standards stated in the import permit.

Because we distribute our materials as public goods, we ensure that all seed sent out or received can be used and distributed without restrictions from the supplier or the recipient. This is achieved by the signing of a standard material transfer agreement that complies with International treaty on Plant Genetic Resources for Food and Agriculture. This is done through CIMMYT’s legal unit.

Petri dishes and a microscope in Amos Alakonya's lab. (Photo: Eleusis Llanderal/CIMMYT)
Petri dishes and a microscope in Amos Alakonya’s lab. (Photo: Eleusis Llanderal/CIMMYT)

Once we have received all the necessary documents, materials are cleared through customs and delivered to the lab, where we begin our analysis. The first thing we do is assess the material visually and confirm there is no discoloration and no foreign material like soil or seeds from other species. At the next stage, we set up several assays to detect fungi, bacteria and viruses. We only release seed to scientists or allow distribution after we’ve confirmed they are free from injurious pathogens. Overall, this process takes between 25 and 40 days, so scientists must plan ahead to avoid any inconvenience.

That sounds like a complex process. Do you face any challenges along the way?

There are several challenges but we work around them. One of the biggest ones is meeting up with time expectations. For example, every scientist wants to make sure that they’re on track, but sometimes the seed takes longer than expected to arrive or the documentation gets misplaced which means the seed cannot be released from customs in time.

Even after a delay, the seed has to still pass through the standard health testing procedure. Sometimes we find that the supplier’s NPPO hasn’t carried out the right tests, so we bring in seed that turns out to be non-compliant and may end up being destroyed as a result. However, we only recommend seed destruction in cases where we can’t mitigate.

That’s why it’s crucial that everyone — at all stages of the seed production value chain — is aware of the risks and appropriate mitigation processes. These include checking seed before planting, regular field inspections, and observing field hygiene and spraying regimes.

The theme for this year’s event focuses on transboundary threats to plant health. Are there any emerging ones that you’re concerned about?

Currently there are three main concerns. The first is Maize Lethal Necrosis. The disease was initially reported in the USA and Peru in 1977, but since 2011 the disease has been invading farms in east and central Africa. Because of this, maize breeders in the region cannot send seed directly to their partners in other regions of the world without going through a quarantine field station in Zimbabwe. This comes with additional costs and time burden to the program.

We’re also very concerned about wheat blast, which is now present in Bangladesh where we have trials and share seed in both directions. We have therefore already put in place screening tools against wheat blast to ensure we do not introduce it into experimental fields in Mexico.

And finally, we have the fall armyworm. This pest is indigenous to South America where it is less ferocious, but ever since it reached Africa around 2016 it has been causing destruction to maize and costing farmers lots of money to control through application of chemicals. This emerging disease really undermines food security efforts.

This is obviously an important topic to raise global awareness about. Why do you think it is so crucial to discuss seed health within CIMMYT internally as well?

Amos Alakonya, head of CIMMYT's Seed Health unit. (Photo: Eleusis Llanderal/CIMMYT)
Amos Alakonya, head of CIMMYT’s Seed Health unit. (Photo: Eleusis Llanderal/CIMMYT)

It’s very important that everyone working at CIMMYT, and especially those working with seed, is aware of the potential risks because about 30% of maize and 50% of wheat grown worldwide can be traced to CIMMYT germplasm. And it’s even more important for Mexico because most of our wheat breeding program is based here and it is also the center of origin for maize. With partners in more than 100 countries we have to be extremely vigilant. If anything goes wrong here, many countries will be at risk.

Ultimately, we want people to be aware of the important role they play in ensuring phytosanitary compliance because prevention is better than cure. We would like to envisage a situation where everybody in CIMMYT is aware of the mitigation processes that have been put in place to ensure safe seed exchanges.

Will you continue working to raise awareness beyond this year’s event?

Yes. In December 2018, the United Nations declared 2020 the International Year of Plant Health. Everybody will be encouraged to take this opportunity to inform people about the importance of seed health, especially as it relates to food security, environmental conservation and economic empowerment.

It’s exciting because this event only happens every 30 to 50 years, so this is really a once in a lifetime opportunity to showcase the work we do every day, both as a unit and in collaboration with our global partners.

Cover photo:
A mixture of maize seeds seen in close-up. (Photo: Xochiquetzal Fonseca/CIMMYT)